Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc12g005200.3 Solanum lycopersicum HOM05D006520 ORTHO05D008405 7.2e-190 667.2 355 100.0
Sopen12g001190 Solanum pennellii HOM05D006520 ORTHO05D008405 8.8e-188 660.2 355 98.6
PGSC0003DMG400001100 Solanum tuberosum HOM05D006520 ORTHO05D008405 1.5e-187 659.4 355 98.6
CAN.G315.8 Capsicum annuum HOM05D006520 ORTHO05D008405 6.6e-175 617.5 351 94.0
Nitab4.5_0000653g0110 Nicotiana tabacum HOM05D006520 ORTHO05D008405 4.3e-174 614.8 355 91.5
Nitab4.5_0004600g0010 Nicotiana tabacum HOM05D006520 ORTHO05D008405 2.0e-171 605.9 355 90.1
Peaxi162Scf01097g00110 Petunia axillaris HOM05D006520 ORTHO05D008405 2.7e-168 595.5 353 89.8
Cc05_g13380 Coffea canephora HOM05D006520 ORTHO05D008405 7.1e-153 544.3 356 79.5
Migut.M01795 Erythranthe guttata HOM05D006520 ORTHO05D008405 2.5e-150 535.8 356 77.8
Dinv22290 Davidia involucrata HOM05D006520 ORTHO05D008405 7.3e-150 534.3 357 79.8
Oeu021407.1 Olea europaea HOM05D006520 ORTHO05D008405 6.2e-149 531.2 356 78.4
CANSAT35G1182 Cannabis sativa HOM05D006520 ORTHO05D008405 1.2e-147 526.9 354 77.7
TWI38G0825 Tripterygium wilfordii HOM05D006520 ORTHO05D008405 1.2e-147 526.9 333 82.0
Lj8A167T45 Lonicera japonica HOM05D006520 ORTHO05D008405 1.5e-147 526.6 349 79.4
CSS0025953 Camellia sinensis var. sinensis HOM05D006520 ORTHO05D008405 7.6e-147 524.2 351 78.9
vmacro11755 Vaccinium macrocarpon HOM05D006520 ORTHO05D008405 9.9e-147 523.9 356 78.9
Ciclev10008777m.g Citrus clementina HOM05D006520 ORTHO05D008405 4.9e-146 521.5 333 80.2
QL08p012619 Quercus lobata HOM05D006520 ORTHO05D008405 1.4e-145 520.0 332 82.5
SGA_v2.0_scaffold258G45796 Striga asiatica HOM05D006520 ORTHO05D008405 7.1e-145 517.7 348 78.2
FvH4_3g22000 Fragaria vesca HOM05D006520 ORTHO05D008405 1.0e-143 513.8 362 77.3
FAN16G1768 Fragaria x ananassa HOM05D006520 ORTHO05D008405 3.0e-143 512.3 362 76.8
Duzib213G0852 Durio zibethinus HOM05D006520 ORTHO05D008405 6.6e-143 511.1 332 78.9
PGR083G2407 Punica granatum HOM05D006520 ORTHO05D008405 6.6e-143 511.1 347 77.2
COL.COLO4_09604 Corchorus olitorius HOM05D006520 ORTHO05D008405 1.9e-142 509.6 339 77.6
Thecc.07G046500 Theobroma cacao HOM05D006520 ORTHO05D008405 1.9e-142 509.6 357 75.6
Cfa020400 Carpinus fangiana HOM05D006520 ORTHO05D008405 2.5e-142 509.2 355 77.2
Atru.chr2.3238 Acer truncatum HOM05D006520 ORTHO05D008405 5.6e-142 508.1 333 78.4
DCAR_010030 Daucus carota HOM05D006520 ORTHO05D008405 5.6e-142 508.1 355 74.6
RcHm_v2.0_Chr5g0037851 Rosa chinensis HOM05D006520 ORTHO05D008405 5.6e-142 508.1 362 76.8
Cpa.g.sc1133.1 Carica papaya HOM05D006520 ORTHO05D008405 9.6e-142 507.3 333 79.6
CiPaw.11G185500 Carya illinoinensis HOM05D006520 ORTHO05D008405 9.6e-142 507.3 362 75.4
TAR362G1255 Trochodendron aralioides HOM05D006520 ORTHO05D008405 9.6e-142 507.3 344 76.7
Hund18268 Selenicereus undatus HOM05D006520 ORTHO05D008405 1.2e-141 506.9 358 75.7
MD03G1209400 Malus domestica HOM05D006520 ORTHO05D008405 4.7e-141 505.0 333 79.0
FAN21G1190 Fragaria x ananassa HOM05D006520 ORTHO05D008405 6.2e-141 504.6 362 76.0
GSVIVG01001984001 Vitis vinifera HOM05D006520 ORTHO05D008405 1.4e-140 503.4 333 79.3
Sed0027741 Sechium edule HOM05D006520 ORTHO05D008405 5.3e-140 501.5 348 75.6
Eucgr.F00972 Eucalyptus grandis HOM05D006520 ORTHO05D008405 9.0e-140 500.7 333 78.4
Potri.011G135600 Populus trichocarpa HOM05D006520 ORTHO05D008405 9.0e-140 500.7 351 76.9
AUR62043225 Chenopodium quinoa HOM05D006520 ORTHO05D008405 1.2e-139 500.4 358 75.7
Haze_09634 Corylus avellana HOM05D006520 ORTHO05D008405 1.2e-139 500.4 369 74.3
Gohir.A01G076200 Gossypium hirsutum HOM05D006520 ORTHO05D008405 2.0e-139 499.6 333 78.7
Gorai.002G084200 Gossypium raimondii HOM05D006520 ORTHO05D008405 2.0e-139 499.6 333 78.7
Nn3g21422 Nelumbo nucifera HOM05D006520 ORTHO05D008405 3.4e-139 498.8 347 74.9
Aqoxy5G00708 Aquilegia oxysepala HOM05D006520 ORTHO05D008405 7.6e-139 497.7 360 73.6
THA.LOC104817880 Tarenaya hassleriana HOM05D006520 ORTHO05D008405 7.6e-139 497.7 342 76.3
CsaV3_3G023150 Cucumis sativus L. HOM05D006520 ORTHO05D008405 6.4e-138 494.6 336 76.2
AUR62020529 Chenopodium quinoa HOM05D006520 ORTHO05D008405 1.1e-137 493.8 358 74.9
HanXRQChr08g0234071 Helianthus annuus HOM05D006520 ORTHO05D008405 1.1e-137 493.8 352 75.3
Sc16g0006360 Simmondsia chinensis HOM05D006520 ORTHO05D008405 2.4e-137 492.7 358 74.9
MELO3C018098.2 Cucumis melo HOM05D006520 ORTHO05D008405 3.2e-137 492.3 336 75.6
ECA246G0715 Erigeron canadensis HOM05D006520 ORTHO05D008405 3.2e-137 492.3 334 77.2
Glyma.06G270300 Glycine max HOM05D006520 ORTHO05D008405 1.2e-136 490.3 335 76.7
Phvul.011G139475 Phaseolus vulgaris HOM05D006520 ORTHO05D008405 2.7e-136 489.2 335 77.3
AL1G58660 Arabidopsis lyrata HOM05D006520 ORTHO05D008405 4.6e-136 488.4 346 74.9
VMungo1127G1053 Vigna mungo HOM05D006520 ORTHO05D008405 6.0e-136 488.0 335 77.0
Ah.06g182970 Amaranthus hybridus HOM05D006520 ORTHO05D008405 1.3e-135 486.9 358 73.2
Lalb_Chr03g0030081 Lupinus albus HOM05D006520 ORTHO05D008405 1.3e-135 486.9 343 74.1
Ca_18859_v3 Cicer arietinum L. HOM05D006520 ORTHO05D008405 1.7e-135 486.5 336 76.5
Carub.0001s3988 Capsella rubella HOM05D006520 ORTHO05D008405 2.3e-135 486.1 346 74.6
Sabra11G0121700 Salix brachista HOM05D006520 ORTHO05D008405 3.9e-135 485.3 365 71.5
Lj3g0004956 Lotus japonicus HOM05D006520 ORTHO05D008405 6.6e-135 484.6 331 76.4
Prupe.4G205700 Prunus persica HOM05D006520 ORTHO05D008405 8.7e-135 484.2 346 74.6
AT1G50940 Arabidopsis thaliana HOM05D006520 ORTHO05D008405 1.1e-134 483.8 333 75.7
PSO832G0135 Papaver somniferum HOM05D006520 ORTHO05D008405 1.1e-134 483.8 352 73.0
Sabra11G0121400 Salix brachista HOM05D006520 ORTHO05D008405 1.1e-134 483.8 365 71.2
Thhalv10011599m.g Eutrema salsugineum HOM05D006520 ORTHO05D008405 1.5e-134 483.4 333 76.3
Medtr4g080790 Medicago truncatula HOM05D006520 ORTHO05D008405 7.3e-134 481.1 335 76.4
Aa31LG10G3340 Aethionema arabicum HOM05D006520 ORTHO05D008405 9.6e-134 480.7 333 74.8
PSO210G5695 Papaver somniferum HOM05D006520 ORTHO05D008405 9.6e-134 480.7 352 73.0
arahy.Tifrunner.gnm1.ann1.45MNV2 Arachis hypogaea HOM05D006520 ORTHO05D008405 4.0e-132 475.3 332 75.6
ATR0706G183 Amborella trichopoda HOM05D006520 ORTHO05D008405 3.4e-131 472.2 355 69.9
Lsat_1_v5_gn_7_65980 Lactuca sativa HOM05D006520 ORTHO05D008405 5.8e-131 471.5 335 74.0
BcaC01g01246 Brassica carinata HOM05D006520 ORTHO05D008405 1.1e-129 467.2 347 71.8
A08p03100 Brassica napus HOM05D006520 ORTHO05D008405 1.1e-129 467.2 347 71.8
BolC3t21294H Brassica oleracea HOM05D006520 ORTHO05D008405 1.1e-129 467.2 347 71.8
BraA08t32341Z Brassica rapa HOM05D006520 ORTHO05D008405 1.1e-129 467.2 347 71.8
C03p89710 Brassica napus HOM05D006520 ORTHO05D008405 1.4e-129 466.8 347 71.8
CARHR040980 Cardamine hirsuta HOM05D006520 ORTHO05D008405 3.2e-129 465.7 333 73.6
BcaB04g17242 Brassica carinata HOM05D006520 ORTHO05D008405 4.2e-129 465.3 364 69.2
Psat7g163040 Pisum sativum HOM05D006520 ORTHO05D008405 4.2e-129 465.3 340 72.9
Sp1g37680 Schrenkiella parvula HOM05D006520 ORTHO05D008405 5.4e-129 464.9 334 74.6
EL10Ac4g07934 Beta vulgaris HOM05D006520 ORTHO05D008405 3.9e-127 458.8 358 71.2
ClCG05G014620 Citrullus lanatus HOM05D006520 ORTHO05D008405 3.9e-127 458.8 333 73.0
Os03g0835400 Oryza sativa ssp. japonica HOM05D006520 ORTHO05D008405 3.3e-126 455.7 334 71.6
HPP92_026253 Vanilla planifolia HOM05D006520 ORTHO05D008405 2.8e-125 452.6 338 68.3
TPR.G25908 Trifolium pratense HOM05D006520 ORTHO05D008405 1.8e-124 449.9 299 77.9
Manes.15G075200 Manihot esculenta HOM05D006520 ORTHO05D008405 3.9e-119 432.2 270 81.9
Actinidia09928 Actinidia chinensis HOM05D006520 ORTHO05D008405 1.9e-118 429.9 270 81.1
Pp3c15_18640 Physcomitrium patens HOM05D006520 ORTHO05D008405 8.2e-109 397.9 342 59.1
SHI31861 Sapria himalayana HOM05D006520 ORTHO05D008405 1.3e-106 390.6 356 60.4
Mapoly0055s0094 Marchantia polymorpha HOM05D006520 ORTHO05D008405 1.7e-106 390.2 346 57.8
Gohir.D01G063700 Gossypium hirsutum HOM05D006520 ORTHO05D008405 2.3e-103 379.8 268 74.6
SMO169G0265 Selaginella moellendorffii HOM05D006520 ORTHO05D008405 5.1e-103 378.6 338 58.3
SalBow6G5624 Salvia bowleyana HOM05D006520 ORTHO05D008405 1.2e-96 357.5 265 72.8
CiPaw.11G185700 Carya illinoinensis HOM05D006520 ORTHO05D008405 1.3e-82 310.8 290 62.8
Zm00001eb063680 Zea mays HOM05D006520 ORTHO05D008405 6.3e-77 292.0 242 62.8
Cre16.g687950 Chlamydomonas reinhardtii HOM05D006520 ORTHO05D008405 8.5e-74 281.6 347 47.3
TAR362G0323 Trochodendron aralioides HOM05D000062 ORTHO05D000043 5.5e-73 278.9 273 56.8
CDE01G0592 Ceratophyllum demersum HOM05D006520 ORTHO05D008405 9.4e-73 278.1 229 68.1
Haze_27296 Corylus avellana HOM05D006520 ORTHO05D008405 2.0e-70 270.4 328 48.2
PRCOL_00001901 Prasinoderma coloniale HOM05D006520 ORTHO05D008405 1.7e-66 257.3 311 47.9
unitig_62.g23270 Utricularia gibba HOM05D006520 ORTHO05D008405 2.6e-62 243.4 182 69.8
CsaV3_3G025180 Cucumis sativus L. HOM05D006520 ORTHO05D008405 5.7e-62 242.3 151 79.5
CsaV3_3G025190 Cucumis sativus L. HOM05D006520 ORTHO05D008405 2.2e-61 240.4 193 66.3
Cfa027367 Carpinus fangiana HOM05D006520 ORTHO05D008405 2.8e-61 240.0 332 44.9
arahy.Tifrunner.gnm1.ann1.3QT6IB Arachis hypogaea HOM05D006520 ORTHO05D008405 4.1e-60 236.1 332 46.7
CsaV3_UNG094710 Cucumis sativus L. HOM05D006520 ORTHO05D008405 2.0e-54 217.2 186 64.5
AagrBONN_evm.TU.Sc2ySwM_228.3593 Anthoceros agrestis HOM05D006520 ORTHO05D008405 9.5e-49 198.4 170 57.6
Glyma.12G134400 Glycine max HOM05D006520 ORTHO05D008405 9.5e-49 198.4 158 69.0
SEGI_24363 Sequoiadendron giganteum HOM05D006520 ORTHO05D008405 1.7e-42 177.6 134 65.7
Haze_27029 Corylus avellana HOM05D006520 ORTHO05D008405 7.3e-41 172.2 265 41.1
CsaV3_UNG094720 Cucumis sativus L. HOM05D006520 ORTHO05D008405 8.1e-40 168.7 135 67.4
SEGI_31254 Sequoiadendron giganteum HOM05D006520 ORTHO05D008405 4.4e-38 162.9 91 89.0
Actinidia27215 Actinidia chinensis HOM05D006520 ORTHO05D008405 7.8e-27 125.6 138 60.9
Pp3c15_18800 Physcomitrium patens HOM05D006520 ORTHO05D008405 3.9e-26 123.2 133 52.6
unitig_62.g23271 Utricularia gibba HOM05D006520 ORTHO05D008405 7.3e-25 119.0 66 87.9
CDE01G0120 Ceratophyllum demersum HOM05D006520 ORTHO05D008405 3.8e-21 106.7 57 89.5
SEGI_23300 Sequoiadendron giganteum HOM05D006520 ORTHO05D008405 3.6e-16 90.1 89 53.9
EL10Ac4g08085 Beta vulgaris HOM05D006520 ORTHO05D090166 2.9e-13 80.5 43 90.7
MD11G1224100 Malus domestica HOM05D006520 ORTHO05D008405 4.9e-13 79.7 46 84.8


User provided reference genes

Program Settings