Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g073300.2 Solanum lycopersicum HOM05D004887 ORTHO05D006168 3.2e-201 704.9 358 100.0
Sopen11g030920 Solanum pennellii HOM05D004887 ORTHO05D006168 9.2e-201 703.4 358 99.4
Nitab4.5_0000610g0150 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.4e-188 662.9 358 94.1
CAN.G661.4 Capsicum annuum HOM05D004887 ORTHO05D006168 1.5e-187 659.4 357 92.7
Nitab4.5_0003782g0060 Nicotiana tabacum HOM05D004887 ORTHO05D006168 1.9e-174 615.9 358 89.7
Peaxi162Scf00406g00137 Petunia axillaris HOM05D004887 ORTHO05D006168 1.4e-172 609.8 358 87.4
Dinv32870 Davidia involucrata HOM05D004887 ORTHO05D006168 1.6e-165 586.3 351 83.8
Migut.D02114 Erythranthe guttata HOM05D004887 ORTHO05D006168 3.4e-163 578.6 358 81.8
Migut.G01105 Erythranthe guttata HOM05D004887 ORTHO05D006168 5.8e-163 577.8 351 82.9
Migut.G01142 Erythranthe guttata HOM05D004887 ORTHO05D006168 2.2e-162 575.9 351 82.6
Hma1.2p1_0624F.1_g191380 Hydrangea macrophylla HOM05D004887 ORTHO05D006168 7.1e-161 570.9 351 82.3
DCAR_018895 Daucus carota HOM05D004887 ORTHO05D006168 2.3e-159 565.8 345 80.0
Cc01_g12500 Coffea canephora HOM05D004887 ORTHO05D006168 1.6e-157 559.7 348 81.0
GSVIVG01025008001 Vitis vinifera HOM05D004887 ORTHO05D006168 1.8e-156 556.2 356 80.3
Cpa.g.sc190.13 Carica papaya HOM05D004887 ORTHO05D006168 2.4e-156 555.8 352 79.8
COL.COLO4_18471 Corchorus olitorius HOM05D004887 ORTHO05D006168 5.3e-156 554.7 348 81.3
Oeu041027.1 Olea europaea HOM05D004887 ORTHO05D006168 5.3e-156 554.7 358 79.1
PGR102G2111 Punica granatum HOM05D004887 ORTHO05D006168 1.2e-155 553.5 352 79.5
Prupe.6G081500 Prunus persica HOM05D004887 ORTHO05D006168 1.7e-154 549.7 353 78.8
MD11G1143700 Malus domestica HOM05D004887 ORTHO05D006168 6.4e-154 547.7 352 79.3
Migut.N02667 Erythranthe guttata HOM05D004887 ORTHO05D006168 9.3e-153 543.9 347 78.4
MD03G1097100 Malus domestica HOM05D004887 ORTHO05D006168 1.6e-152 543.1 352 78.7
Ciclev10028710m.g Citrus clementina HOM05D004887 ORTHO05D006168 3.5e-152 542.0 349 77.9
Glyma.11G141400 Glycine max HOM05D004887 ORTHO05D006168 7.9e-152 540.8 355 76.6
Actinidia37217 Actinidia chinensis HOM05D004887 ORTHO05D006168 3.0e-151 538.9 344 80.5
CiPaw.13G097700 Carya illinoinensis HOM05D004887 ORTHO05D006168 3.9e-151 538.5 354 77.7
MBI14_g18541_MAGBIO Magnolia biondii HOM05D004887 ORTHO05D006168 3.9e-151 538.5 358 77.9
Thhalv10013947m.g Eutrema salsugineum HOM05D004887 ORTHO05D006168 8.7e-151 537.3 347 76.4
Gohir.D03G128400 Gossypium hirsutum HOM05D004887 ORTHO05D006168 8.7e-151 537.3 348 78.4
Potri.001G237000 Populus trichocarpa HOM05D004887 ORTHO05D006168 8.7e-151 537.3 344 79.4
Lalb_Chr01g0003761 Lupinus albus HOM05D004887 ORTHO05D006168 1.1e-150 537.0 354 77.1
RcHm_v2.0_Chr5g0063631 Rosa chinensis HOM05D004887 ORTHO05D006168 1.1e-150 537.0 351 78.1
BcaC04g19652 Brassica carinata HOM05D004887 ORTHO05D006168 1.5e-150 536.6 347 75.8
C09p52470 Brassica napus HOM05D004887 ORTHO05D006168 1.5e-150 536.6 347 75.8
BolC9t58114H Brassica oleracea HOM05D004887 ORTHO05D006168 1.5e-150 536.6 347 75.8
BraA10t43799Z Brassica rapa HOM05D004887 ORTHO05D006168 1.9e-150 536.2 347 75.8
Gohir.A03G039700 Gossypium hirsutum HOM05D004887 ORTHO05D006168 1.9e-150 536.2 348 78.4
TAR369G0226 Trochodendron aralioides HOM05D004887 ORTHO05D006168 4.3e-150 535.0 355 76.3
arahy.Tifrunner.gnm1.ann1.31UC9J Arachis hypogaea HOM05D004887 ORTHO05D006168 5.6e-150 534.6 352 75.6
MSTRG.17840 Avicennia marina HOM05D004887 ORTHO05D006168 5.6e-150 534.6 350 77.4
A10p17180 Brassica napus HOM05D004887 ORTHO05D006168 7.4e-150 534.3 347 75.5
FAN21G1310 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.3e-149 533.5 351 78.1
AT5G59960 Arabidopsis thaliana HOM05D004887 ORTHO05D006168 1.6e-149 533.1 348 76.4
arahy.Tifrunner.gnm1.ann1.1V42NR Arachis hypogaea HOM05D004887 ORTHO05D006168 1.6e-149 533.1 352 75.3
Phvul.011G065900 Phaseolus vulgaris HOM05D004887 ORTHO05D006168 1.6e-149 533.1 355 75.2
BcaB08g36206 Brassica carinata HOM05D004887 ORTHO05D006168 2.1e-149 532.7 347 75.2
Gorai.003G135100 Gossypium raimondii HOM05D004887 ORTHO05D006168 2.1e-149 532.7 348 77.9
FvH4_3g35470 Fragaria vesca HOM05D004887 ORTHO05D006168 2.8e-149 532.3 351 78.1
TPR.G10217 Trifolium pratense HOM05D004887 ORTHO05D006168 2.8e-149 532.3 355 74.6
VMungo1127G0043 Vigna mungo HOM05D004887 ORTHO05D006168 3.7e-149 531.9 355 74.9
Lj3g0008400 Lotus japonicus HOM05D004887 ORTHO05D006168 8.2e-149 530.8 355 75.5
Medtr4g063570 Medicago truncatula HOM05D004887 ORTHO05D006168 1.1e-148 530.4 355 74.1
Sp6g21640 Schrenkiella parvula HOM05D004887 ORTHO05D006168 1.1e-148 530.4 347 75.2
Aqoxy4G02983 Aquilegia oxysepala HOM05D004887 ORTHO05D006168 4.0e-148 528.5 350 77.7
Eucgr.B02388 Eucalyptus grandis HOM05D004887 ORTHO05D006168 9.0e-148 527.3 352 75.0
Manes.11G133000 Manihot esculenta HOM05D004887 ORTHO05D006168 9.0e-148 527.3 348 76.4
Duzib150G1309 Durio zibethinus HOM05D004887 ORTHO05D006168 1.5e-147 526.6 348 78.2
CANSAT54G1644 Cannabis sativa HOM05D004887 ORTHO05D006168 2.0e-147 526.2 363 73.6
Hund18927 Selenicereus undatus HOM05D004887 ORTHO05D006168 2.6e-147 525.8 356 75.0
Manes.04G032300 Manihot esculenta HOM05D004887 ORTHO05D006168 5.8e-147 524.6 348 76.1
A03p11380 Brassica napus HOM05D004887 ORTHO05D006168 7.6e-147 524.2 347 75.2
HanXRQChr04g0107001 Helianthus annuus HOM05D004887 ORTHO05D006168 1.0e-146 523.9 342 76.6
EL10Ac7g15978 Beta vulgaris HOM05D004887 ORTHO05D006168 1.3e-146 523.5 354 74.0
Nn2g12934 Nelumbo nucifera HOM05D004887 ORTHO05D006168 1.7e-146 523.1 355 76.3
THA.LOC104799466 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 1.7e-146 523.1 350 75.4
PSO384G2944 Papaver somniferum HOM05D004887 ORTHO05D006168 3.8e-146 521.9 358 73.2
Potri.009G028500 Populus trichocarpa HOM05D004887 ORTHO05D006168 8.4e-146 520.8 344 76.7
ECA247G3571 Erigeron canadensis HOM05D004887 ORTHO05D006168 1.9e-145 519.6 348 75.6
Glyma.12G064800 Glycine max HOM05D004887 ORTHO05D006168 1.9e-145 519.6 355 74.6
HanXRQChr06g0175771 Helianthus annuus HOM05D004887 ORTHO05D006168 1.9e-145 519.6 344 76.5
Gorai.004G004400 Gossypium raimondii HOM05D004887 ORTHO05D006168 2.5e-145 519.2 345 75.4
CsaV3_1G033620 Cucumis sativus L. HOM05D004887 ORTHO05D006168 4.2e-145 518.5 350 75.1
AL8G36530 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 9.3e-145 517.3 375 71.2
PSO339G5095 Papaver somniferum HOM05D004887 ORTHO05D006168 9.3e-145 517.3 358 72.9
AL781U10010 Arabidopsis lyrata HOM05D004887 ORTHO05D006168 3.5e-144 515.4 339 76.1
Aa31LG1G12090 Aethionema arabicum HOM05D004887 ORTHO05D006168 4.6e-144 515.0 348 74.7
Gohir.D08G010900 Gossypium hirsutum HOM05D004887 ORTHO05D006168 6.0e-144 514.6 344 75.3
Lsat_1_v5_gn_8_77921 Lactuca sativa HOM05D004887 ORTHO05D006168 3.0e-143 512.3 339 74.9
Lsat_1_v5_gn_9_22360 Lactuca sativa HOM05D004887 ORTHO05D006168 8.7e-143 510.8 339 74.6
Sc21g0005570 Simmondsia chinensis HOM05D004887 ORTHO05D006168 3.3e-142 508.8 359 72.4
SalBow3G3342 Salvia bowleyana HOM05D004887 ORTHO05D006168 5.7e-142 508.1 370 70.8
Duzib168G0637 Durio zibethinus HOM05D004887 ORTHO05D006168 5.3e-140 501.5 345 75.7
HPP92_015526 Vanilla planifolia HOM05D004887 ORTHO05D006168 2.0e-139 499.6 353 72.0
ClCG03G001950 Citrullus lanatus HOM05D004887 ORTHO05D006168 3.4e-139 498.8 376 69.7
arahy.Tifrunner.gnm1.ann1.LTG2DU Arachis hypogaea HOM05D004887 ORTHO05D006168 1.0e-138 497.3 374 67.1
Os01g0151600 Oryza sativa ssp. japonica HOM05D004887 ORTHO05D006168 5.0e-138 495.0 352 70.5
CSS0023093 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 1.5e-134 483.4 338 75.1
SGA_v2.0_scaffold61G21266 Striga asiatica HOM05D004887 ORTHO05D006168 2.8e-133 479.2 340 74.7
Lj1A157T41 Lonicera japonica HOM05D004887 ORTHO05D006168 6.3e-133 478.0 317 76.0
Zm00001eb124290 Zea mays HOM05D004887 ORTHO05D006168 8.2e-133 477.6 345 67.5
CSS0048955 Camellia sinensis var. sinensis HOM05D004887 ORTHO05D006168 3.1e-132 475.7 358 70.4
TWI79G0894 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 9.1e-132 474.2 294 77.9
Rhsim13G0085300 Rhododendron simsii HOM05D001446 ORTHO05D001360 2.2e-130 469.5 388 63.4
AUR62009609 Chenopodium quinoa HOM05D004887 ORTHO05D006168 5.5e-129 464.9 313 76.0
Psat7g217880 Pisum sativum HOM05D004887 ORTHO05D006168 2.1e-128 463.0 383 64.5
Cfa011464 Carpinus fangiana HOM05D004887 ORTHO05D006168 4.4e-126 455.3 345 69.9
Atru.chr3.3838 Acer truncatum HOM05D004887 ORTHO05D006168 5.7e-126 454.9 297 79.1
FAN11G2539 Fragaria x ananassa HOM05D004887 ORTHO05D006168 1.3e-125 453.8 341 71.6
QL01p032955 Quercus lobata HOM05D004887 ORTHO05D006168 3.7e-125 452.2 339 70.5
Haze_24049 Corylus avellana HOM05D004887 ORTHO05D006168 3.1e-124 449.1 297 77.1
arahy.Tifrunner.gnm1.ann1.RHUE9Y Arachis hypogaea HOM05D004887 ORTHO05D006168 1.2e-123 447.2 303 71.0
MELO3C020709.2 Cucumis melo HOM05D004887 ORTHO05D006168 2.0e-123 446.4 296 74.7
FAN25G2556 Fragaria x ananassa HOM05D004887 ORTHO05D006168 2.6e-123 446.0 341 70.4
Sed0009981 Sechium edule HOM05D004887 ORTHO05D006168 1.9e-121 439.9 277 76.5
Duzib170G0837 Durio zibethinus HOM05D004887 ORTHO05D006168 6.1e-120 434.9 356 66.0
AUR62001822 Chenopodium quinoa HOM05D004887 ORTHO05D006168 1.0e-119 434.1 296 74.7
unitig_899.g14894 Utricularia gibba HOM05D004887 ORTHO05D006168 1.3e-117 427.2 306 70.3
Carub.0008s2049 Capsella rubella HOM05D004887 ORTHO05D006168 4.8e-117 425.2 253 81.8
CDE07G1169 Ceratophyllum demersum HOM05D004887 ORTHO05D006168 1.4e-116 423.7 348 65.8
BraA03t10452Z Brassica rapa HOM05D004887 ORTHO05D006168 4.1e-116 422.2 253 80.6
THA.LOC104810819 Tarenaya hassleriana HOM05D004887 ORTHO05D006168 5.3e-116 421.8 297 72.4
ATR0559G318 Amborella trichopoda HOM05D004887 ORTHO05D006168 8.5e-114 414.5 300 70.3
TWI31G1179 Tripterygium wilfordii HOM05D004887 ORTHO05D006168 3.3e-110 402.5 344 63.4
Lj2C1057T15 Lonicera japonica HOM05D004887 ORTHO05D006168 7.0e-108 394.8 231 82.7
Actinidia07046 Actinidia chinensis HOM05D004887 ORTHO05D006168 2.0e-107 393.3 255 78.4
Psat7g218040 Pisum sativum HOM05D004887 ORTHO05D006168 8.5e-106 387.9 289 67.1
Pp3c8_24390 Physcomitrium patens HOM05D004887 ORTHO05D006168 3.0e-103 379.4 342 55.0
FAN16G2077 Fragaria x ananassa HOM05D001446 ORTHO05D001360 2.0e-102 376.7 259 77.2
Dinv03548 Davidia involucrata HOM05D004887 ORTHO05D006168 7.5e-102 374.8 234 82.1
Pp3c24_20310 Physcomitrium patens HOM05D004887 ORTHO05D006168 7.5e-102 374.8 342 55.0
TAR623G0510 Trochodendron aralioides HOM05D004887 ORTHO05D006168 2.7e-99 366.3 256 75.8
Thecc.09G325700 Theobroma cacao HOM05D004887 ORTHO05D006168 5.9e-99 365.2 248 78.2
SMO118G0033 Selaginella moellendorffii HOM05D004887 ORTHO05D006168 1.7e-98 363.6 327 57.2
Sabra16G0142900 Salix brachista HOM05D001446 ORTHO05D001360 2.3e-98 363.2 387 55.6
Ca_19183_v3 Cicer arietinum L. HOM05D004887 ORTHO05D006168 1.4e-95 354.0 254 72.4
Mapoly0001s0555 Marchantia polymorpha HOM05D004887 ORTHO05D006168 8.9e-95 351.3 342 52.3
vmacro03096 Vaccinium macrocarpon HOM05D004887 ORTHO05D006168 4.4e-94 349.0 303 62.0
SalBow2G3032 Salvia bowleyana HOM05D004887 ORTHO05D006168 8.6e-90 334.7 261 67.4
AagrBONN_evm.TU.Sc2ySwM_344.5355 Anthoceros agrestis HOM05D004887 ORTHO05D006168 1.4e-87 327.4 294 53.4
Nitab4.5_0000610g0050 Nicotiana tabacum HOM05D004887 ORTHO05D006168 8.9e-87 324.7 373 54.7
Nn2g10420 Nelumbo nucifera HOM05D004887 ORTHO05D006168 1.5e-86 323.9 226 75.2
CARHR273590 Cardamine hirsuta HOM05D004887 ORTHO05D006168 2.3e-82 310.1 189 79.9
CBR_g46654 Chara braunii HOM05D004887 ORTHO05D006168 4.0e-79 299.3 318 48.1
Gohir.A08G000181 Gossypium hirsutum HOM05D004887 ORTHO05D006168 3.4e-78 296.2 226 68.1
Psat7g218000 Pisum sativum HOM05D004887 ORTHO05D006168 3.6e-72 276.2 188 71.8
CARHR273600 Cardamine hirsuta HOM05D004887 ORTHO05D006168 1.1e-57 228.0 159 72.3
PSO384G0451 Papaver somniferum HOM05D004887 ORTHO05D006168 2.5e-57 226.9 186 64.0
Sabra09G0019700 Salix brachista HOM05D004887 ORTHO05D006168 2.7e-43 180.3 172 59.3
Carub.0008s2068 Capsella rubella HOM05D004887 ORTHO05D006168 2.6e-30 137.1 97 68.0
C06p04980 Brassica napus HOM05D004887 ORTHO05D006168 4.6e-27 126.3 72 77.8
BolC6t35622H Brassica oleracea HOM05D004887 ORTHO05D006168 7.9e-27 125.6 73 79.5
A02p35440 Brassica napus HOM05D004887 ORTHO05D006168 1.0e-26 125.2 72 77.8
BraA02t08545Z Brassica rapa HOM05D004887 ORTHO05D006168 1.0e-26 125.2 72 77.8
C03p13170 Brassica napus HOM05D004887 ORTHO05D006168 2.3e-26 124.0 72 79.2
BolC3t13778H Brassica oleracea HOM05D004887 ORTHO05D006168 6.3e-24 115.9 63 82.5
Duzib205G1865 Durio zibethinus HOM05D004887 ORTHO05D006168 8.2e-24 115.5 136 52.2
C03p13130 Brassica napus HOM05D004887 ORTHO05D006168 5.1e-18 96.3 94 53.2
HanXRQChr07g0192801 Helianthus annuus HOM05D004887 ORTHO05D225384 1.7e-08 64.7 50 66.0
Lj1A771T11 Lonicera japonica HOM05D004887 ORTHO05D234499 1.4e-07 61.6 40 72.5


User provided reference genes

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