Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g072950.3 Solanum lycopersicum HOM05D005589 ORTHO05D006948 0.0e+00 1535.4 817 100.0
Sopen11g030610 Solanum pennellii HOM05D005589 ORTHO05D006948 0.0e+00 1518.8 817 98.9
Nitab4.5_0002684g0170 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1387.1 817 89.5
Nitab4.5_0007030g0040 Nicotiana tabacum HOM05D005589 ORTHO05D006948 0.0e+00 1377.1 817 89.2
PGSC0003DMG400015549 Solanum tuberosum HOM05D005589 ORTHO05D006948 0.0e+00 1344.7 817 89.2
CAN.G755.19 Capsicum annuum HOM05D005589 ORTHO05D006948 0.0e+00 1339.3 811 88.2
Peaxi162Scf00411g00711 Petunia axillaris HOM05D005589 ORTHO05D006948 0.0e+00 1303.5 825 84.6
Cc01_g12110 Coffea canephora HOM05D005589 ORTHO05D006948 0.0e+00 1152.9 822 74.8
Lj1A176T55 Lonicera japonica HOM05D005589 ORTHO05D006948 0.0e+00 1133.6 819 73.5
CSS0045601 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1129.4 820 73.0
GSVIVG01025056001 Vitis vinifera HOM05D005589 ORTHO05D006948 0.0e+00 1123.6 819 71.8
Cfa011427 Carpinus fangiana HOM05D005589 ORTHO05D006948 0.0e+00 1121.3 820 71.2
Ciclev10027829m.g Citrus clementina HOM05D005589 ORTHO05D006948 0.0e+00 1120.1 820 71.6
Atru.chr3.3796 Acer truncatum HOM05D005589 ORTHO05D006948 0.0e+00 1115.5 820 71.0
CiPaw.13G101800 Carya illinoinensis HOM05D005589 ORTHO05D006948 0.0e+00 1108.2 819 72.2
Oeu040274.2 Olea europaea HOM05D005589 ORTHO05D006948 0.0e+00 1107.0 843 71.1
Rhsim13G0088500 Rhododendron simsii HOM05D005589 ORTHO05D006948 0.0e+00 1104.0 821 71.3
Migut.D02148 Erythranthe guttata HOM05D005589 ORTHO05D006948 0.0e+00 1101.7 816 71.1
MD11G1116800 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1097.0 819 70.3
Haze_24005 Corylus avellana HOM05D005589 ORTHO05D006948 0.0e+00 1093.6 856 68.2
CSS0023618 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 0.0e+00 1092.8 820 71.3
RcHm_v2.0_Chr5g0062341 Rosa chinensis HOM05D005589 ORTHO05D006948 0.0e+00 1090.5 822 69.0
Dinv26284 Davidia involucrata HOM05D005589 ORTHO05D006948 0.0e+00 1090.1 787 73.4
Duzib168G1570 Durio zibethinus HOM05D005589 ORTHO05D006948 0.0e+00 1089.3 820 70.2
MSTRG.21170 Avicennia marina HOM05D005589 ORTHO05D006948 0.0e+00 1088.2 818 70.5
TWI31G1338 Tripterygium wilfordii HOM05D005589 ORTHO05D006948 0.0e+00 1086.2 817 71.1
Thecc.09G329900 Theobroma cacao HOM05D005589 ORTHO05D006948 0.0e+00 1082.4 819 69.5
DCAR_015589 Daucus carota HOM05D005589 ORTHO05D006948 0.0e+00 1077.8 828 69.8
MD03G1103200 Malus domestica HOM05D005589 ORTHO05D006948 0.0e+00 1077.0 818 69.2
FvH4_3g34630 Fragaria vesca HOM05D005589 ORTHO05D006948 0.0e+00 1075.1 819 68.3
FAN16G1588 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.1e-311 1072.8 819 68.0
Gohir.A05G098800 Gossypium hirsutum HOM05D005589 ORTHO05D006948 2.8e-311 1071.6 824 69.2
FAN11G1618 Fragaria x ananassa HOM05D005589 ORTHO05D006948 5.0e-311 1070.8 819 68.4
Gohir.D05G098801 Gossypium hirsutum HOM05D005589 ORTHO05D006948 8.4e-311 1070.1 824 69.1
Gorai.009G102500 Gossypium raimondii HOM05D005589 ORTHO05D006948 1.5e-310 1069.3 824 68.8
Hund05020 Selenicereus undatus HOM05D005589 ORTHO05D006948 7.2e-310 1067.0 816 69.7
SGA_v2.0_scaffold394G50722 Striga asiatica HOM05D005589 ORTHO05D006948 2.1e-309 1065.4 844 68.8
FAN25G3171 Fragaria x ananassa HOM05D005589 ORTHO05D006948 1.5e-307 1059.3 826 67.2
Eucgr.J02099 Eucalyptus grandis HOM05D005589 ORTHO05D006948 3.7e-306 1054.7 826 67.3
COL.COLO4_18425 Corchorus olitorius HOM05D005589 ORTHO05D006948 4.8e-306 1054.3 820 68.5
EL10Ac7g15939 Beta vulgaris HOM05D005589 ORTHO05D006948 8.2e-306 1053.5 816 68.6
Ah.08g215000 Amaranthus hybridus HOM05D005589 ORTHO05D006948 1.2e-304 1049.7 820 68.3
Ca_19212_v3 Cicer arietinum L. HOM05D005589 ORTHO05D006948 1.1e-302 1043.1 820 67.9
CANSAT54G1803 Cannabis sativa HOM05D005589 ORTHO05D006948 3.2e-302 1041.6 819 67.6
FAN21G0436 Fragaria x ananassa HOM05D005589 ORTHO05D006948 3.2e-302 1041.6 822 66.3
Prupe.6G087200 Prunus persica HOM05D005589 ORTHO05D006948 7.2e-302 1040.4 786 69.5
Lsat_1_v5_gn_9_21601 Lactuca sativa HOM05D005589 ORTHO05D006948 1.0e-300 1036.6 815 67.7
Potri.001G234300 Populus trichocarpa HOM05D005589 ORTHO05D006948 1.0e-300 1036.6 820 68.9
vmacro03127 Vaccinium macrocarpon HOM05D005589 ORTHO05D006948 6.8e-300 1033.9 822 67.8
Lj3g0027543 Lotus japonicus HOM05D005589 ORTHO05D006948 1.7e-298 1029.2 822 67.8
TPR.G2986 Trifolium pratense HOM05D005589 ORTHO05D006948 1.7e-298 1029.2 825 67.2
Psat7g220760 Pisum sativum HOM05D005589 ORTHO05D006948 2.7e-296 1021.9 820 67.0
Aqoxy2G01955 Aquilegia oxysepala HOM05D005589 ORTHO05D006948 3.5e-296 1021.5 821 65.4
Hma1.2p1_0846F.1_g227810 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 6.6e-295 1017.3 756 71.0
Phvul.011G069300 Phaseolus vulgaris HOM05D005589 ORTHO05D006948 1.5e-294 1016.1 820 66.1
Lalb_Chr19g0137591 Lupinus albus HOM05D005589 ORTHO05D006948 3.3e-294 1015.0 821 65.7
PGR119G2409 Punica granatum HOM05D005589 ORTHO05D006948 5.5e-294 1014.2 820 65.7
VMungo1127G2244 Vigna mungo HOM05D005589 ORTHO05D006948 1.6e-293 1012.7 820 66.3
THA.LOC104799457 Tarenaya hassleriana HOM05D005589 ORTHO05D006948 4.0e-292 1008.1 824 65.9
ClCG03G001750 Citrullus lanatus HOM05D005589 ORTHO05D006948 8.9e-292 1006.9 816 65.2
Glyma.12G074800 Glycine max HOM05D005589 ORTHO05D006948 5.7e-291 1004.2 820 65.6
HanXRQChr08g0228221 Helianthus annuus HOM05D005589 ORTHO05D006948 5.7e-291 1004.2 812 66.1
Thhalv10002404m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 7.5e-291 1003.8 821 64.8
TAR623G1588 Trochodendron aralioides HOM05D005589 ORTHO05D006948 7.5e-291 1003.8 757 70.7
Sabra16G0140600 Salix brachista HOM05D005589 ORTHO05D006948 6.3e-290 1000.7 892 62.8
ECA247G1976 Erigeron canadensis HOM05D005589 ORTHO05D006948 9.2e-289 996.9 815 65.6
CsaV3_1G033840 Cucumis sativus L. HOM05D005589 ORTHO05D006948 1.6e-288 996.1 816 64.7
MBI05_g07866_MAGBIO Magnolia biondii HOM05D005589 ORTHO05D006948 4.5e-288 994.6 841 64.4
MELO3C020678.2 Cucumis melo HOM05D005589 ORTHO05D006948 5.9e-288 994.2 816 64.7
A06p20980 Brassica napus HOM05D005589 ORTHO05D006948 1.0e-287 993.4 821 64.3
Sed0009383 Sechium edule HOM05D005589 ORTHO05D006948 1.0e-287 993.4 815 65.0
Sp5g15410 Schrenkiella parvula HOM05D005589 ORTHO05D006948 2.3e-287 992.3 822 64.4
AUR62001854 Chenopodium quinoa HOM05D005589 ORTHO05D006948 1.1e-286 989.9 921 60.4
C03p70540 Brassica napus HOM05D005589 ORTHO05D006948 7.3e-286 987.3 821 63.8
Aa31LG4G15320 Aethionema arabicum HOM05D005589 ORTHO05D006948 4.7e-285 984.6 823 63.4
AL5G25010 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.0e-284 983.4 822 64.2
Carub.0005s1206 Capsella rubella HOM05D005589 ORTHO05D006948 1.0e-284 983.4 822 64.0
AUR62009648 Chenopodium quinoa HOM05D005589 ORTHO05D006948 1.0e-284 983.4 828 65.1
Medtr4g062090 Medicago truncatula HOM05D005589 ORTHO05D006948 5.2e-284 981.1 823 65.1
AT3G46220 Arabidopsis thaliana HOM05D005589 ORTHO05D006948 1.7e-282 976.1 821 63.3
CARHR154660 Cardamine hirsuta HOM05D005589 ORTHO05D006948 2.2e-282 975.7 822 63.9
BolC3t19334H Brassica oleracea HOM05D005589 ORTHO05D006948 4.9e-282 974.5 837 62.6
PSO339G3114 Papaver somniferum HOM05D005589 ORTHO05D006948 9.2e-281 970.3 818 63.1
BraA06t25186Z Brassica rapa HOM05D005589 ORTHO05D006948 1.9e-278 962.6 864 60.9
PSO384G0870 Papaver somniferum HOM05D005589 ORTHO05D006948 1.9e-278 962.6 819 63.1
Manes.04G029200 Manihot esculenta HOM05D005589 ORTHO05D006948 3.7e-274 948.3 754 67.5
arahy.Tifrunner.gnm1.ann1.3ELA68 Arachis hypogaea HOM05D005589 ORTHO05D006948 1.6e-269 932.9 862 60.2
Os05g0117600 Oryza sativa ssp. japonica HOM05D005589 ORTHO05D006948 4.6e-256 888.3 818 57.8
Zm00001eb266020 Zea mays HOM05D005589 ORTHO05D006948 8.1e-253 877.5 822 57.3
unitig_37.g12679 Utricularia gibba HOM05D005589 ORTHO05D006948 5.3e-252 874.8 818 58.8
Thhalv10002414m.g Eutrema salsugineum HOM05D005589 ORTHO05D006948 6.4e-250 867.8 821 59.2
Sc21g0005390 Simmondsia chinensis HOM05D005589 ORTHO05D006948 3.9e-239 832.0 680 65.6
HPP92_025619 Vanilla planifolia HOM05D005589 ORTHO05D006948 8.7e-231 804.3 861 51.9
Cpa.g.sc252.12 Carica papaya HOM05D005589 ORTHO05D006948 6.9e-228 794.7 819 56.7
Actinidia07078 Actinidia chinensis HOM05D005589 ORTHO05D006948 3.4e-219 765.8 595 68.9
Glyma.11G145645 Glycine max HOM05D005589 ORTHO05D006948 3.8e-218 762.3 666 62.9
arahy.Tifrunner.gnm1.ann1.0DF5JX Arachis hypogaea HOM05D005589 ORTHO05D006948 3.6e-176 622.9 627 57.7
Pp3c8_20630 Physcomitrium patens HOM05D005589 ORTHO05D006948 2.9e-170 603.2 836 44.0
SMO196G0111 Selaginella moellendorffii HOM05D005589 ORTHO05D006948 1.9e-169 600.5 784 45.4
AagrBONN_evm.TU.Sc2ySwM_228.2492 Anthoceros agrestis HOM05D005589 ORTHO05D006948 5.2e-167 592.4 764 44.6
SalBow3G0177 Salvia bowleyana HOM05D005589 ORTHO05D006948 5.4e-156 555.8 490 63.3
BcaC01g01924 Brassica carinata HOM05D005589 ORTHO05D006948 1.5e-153 547.7 541 56.6
CBR_g777 Chara braunii HOM05D005589 ORTHO05D006948 2.5e-145 520.4 868 38.2
SalBow3G3271 Salvia bowleyana HOM05D005589 ORTHO05D006948 1.1e-143 515.0 324 79.0
Hma1.2p1_0846F.1_g227820 Hydrangea macrophylla HOM05D005589 ORTHO05D006948 1.5e-142 511.1 404 69.6
ATR0759G074 Amborella trichopoda HOM05D005589 ORTHO05D006948 3.4e-142 510.0 388 66.5
Mapoly0007s0143 Marchantia polymorpha HOM05D005589 ORTHO05D006948 9.9e-142 508.4 838 38.2
CBR_g29437 Chara braunii HOM05D005589 ORTHO05D006948 2.7e-139 500.4 821 38.7
Actinidia37259 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.1e-112 411.0 271 74.2
AL1G56500 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 1.4e-108 398.3 485 51.8
CDE02G1253 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 1.1e-100 372.1 274 67.9
SEGI_37108 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 6.5e-93 346.3 275 59.6
AL1G56480 Arabidopsis lyrata HOM05D005589 ORTHO05D006948 2.6e-89 334.3 313 57.2
CSS0044614 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 4.5e-78 297.0 241 69.7
Cre16.g686650 Chlamydomonas reinhardtii HOM05D005589 ORTHO05D006948 2.5e-60 238.0 816 26.2
SEGI_34947 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 3.4e-57 227.6 352 42.6
PRCOL_00006228 Prasinoderma coloniale HOM05D005589 ORTHO05D006948 8.6e-45 186.4 835 22.6
CSS0011793 Camellia sinensis var. sinensis HOM05D005589 ORTHO05D006948 1.9e-44 185.3 163 60.1
arahy.Tifrunner.gnm1.ann1.35TLEJ Arachis hypogaea HOM05D005589 ORTHO05D006948 5.2e-42 177.2 219 49.8
Sc21g0005380 Simmondsia chinensis HOM05D005589 ORTHO05D006948 2.4e-39 168.3 125 70.4
BcaB01g01018 Brassica carinata HOM05D005589 ORTHO05D006948 7.8e-38 163.3 119 67.2
arahy.Tifrunner.gnm1.ann1.KKDX05 Arachis hypogaea HOM05D001394 ORTHO05D001237 1.5e-33 149.1 93 78.5
ATR0759G057 Amborella trichopoda HOM05D005589 ORTHO05D006948 1.6e-30 139.0 101 70.3
ATR0759G002 Amborella trichopoda HOM05D005589 ORTHO05D006948 2.1e-30 138.7 196 44.4
arahy.Tifrunner.gnm1.ann1.HF8MSC Arachis hypogaea HOM05D005589 ORTHO05D006948 1.4e-26 125.9 207 39.6
Actinidia37258 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.0e-25 122.1 69 89.9
Actinidia37260 Actinidia chinensis HOM05D005589 ORTHO05D006948 2.7e-22 111.7 134 48.5
arahy.Tifrunner.gnm1.ann1.NIGF9J Arachis hypogaea HOM05D001394 ORTHO05D001237 3.5e-22 111.3 69 79.7
Gohir.D08G115100 Gossypium hirsutum HOM05D005589 ORTHO05D047064 3.9e-21 107.8 70 70.0
Gorai.004G124000 Gossypium raimondii HOM05D005589 ORTHO05D047064 3.9e-21 107.8 70 70.0
SEGI_32388 Sequoiadendron giganteum HOM05D005589 ORTHO05D006948 3.5e-14 84.7 79 55.7
arahy.Tifrunner.gnm1.ann1.DV3IGD Arachis hypogaea HOM05D005589 ORTHO05D006948 8.7e-13 80.1 86 58.1
HanXRQChr10g0314321 Helianthus annuus HOM05D005589 ORTHO05D006948 9.6e-12 76.6 68 61.8
arahy.Tifrunner.gnm1.ann1.LY30IG Arachis hypogaea HOM05D005589 ORTHO05D006948 5.3e-10 70.9 173 37.0
CDE02G0022 Ceratophyllum demersum HOM05D005589 ORTHO05D006948 2.2e-08 65.5 47 68.1


User provided reference genes

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