Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g072680.1 Solanum lycopersicum HOM05D005423 ORTHO05D006223 1.2e-187 659.8 363 100.0
Sopen11g030350 Solanum pennellii HOM05D005423 ORTHO05D006223 6.3e-181 637.5 365 96.4
PGSC0003DMG400025363 Solanum tuberosum HOM05D005423 ORTHO05D006223 9.5e-121 437.6 293 84.6
CAN.G84.20 Capsicum annuum HOM05D005423 ORTHO05D006223 1.8e-66 257.3 321 57.3
Nitab4.5_0004015g0040 Nicotiana tabacum HOM05D005423 ORTHO05D006223 3.0e-66 256.5 218 64.2
Nitab4.5_0006659g0010 Nicotiana tabacum HOM05D005423 ORTHO05D006223 8.8e-66 255.0 220 63.2
SGA_v2.0_scaffold1G00298 Striga asiatica HOM05D005423 ORTHO05D006223 1.3e-40 171.4 171 52.0
Migut.M01932 Erythranthe guttata HOM05D005423 ORTHO05D006223 3.7e-40 169.9 164 51.2
TAR636G0950 Trochodendron aralioides HOM05D005423 ORTHO05D006223 2.7e-38 163.7 166 52.4
Hma1.2p1_0410F.1_g147050 Hydrangea macrophylla HOM05D005423 ORTHO05D006223 3.8e-37 159.8 162 55.6
Lj1P1155T48 Lonicera japonica HOM05D005423 ORTHO05D006223 9.4e-36 155.2 208 43.3
Thecc.06G005400 Theobroma cacao HOM05D005423 ORTHO05D006223 1.6e-35 154.5 152 50.0
Atru.chr10.659 Acer truncatum HOM05D005423 ORTHO05D006223 4.7e-35 152.9 167 48.5
Rhsim13G0126500 Rhododendron simsii HOM05D005423 ORTHO05D006223 6.1e-35 152.5 186 51.6
Duzib160G0446 Durio zibethinus HOM05D005423 ORTHO05D006223 1.4e-34 151.4 141 51.1
Manes.03G066900 Manihot esculenta HOM05D005423 ORTHO05D006223 2.3e-34 150.6 165 49.1
Cfa000754 Carpinus fangiana HOM05D005423 ORTHO05D006223 1.5e-33 147.9 161 48.4
MD00G1097400 Malus domestica HOM05D005423 ORTHO05D006223 2.0e-33 147.5 175 47.4
Lsat_1_v5_gn_1_91741 Lactuca sativa HOM05D005423 ORTHO05D006223 2.6e-33 147.1 176 46.6
HanXRQChr01g0020631 Helianthus annuus HOM05D005423 ORTHO05D006223 3.4e-33 146.7 164 49.4
Potri.001G440800 Populus trichocarpa HOM05D005423 ORTHO05D006223 5.7e-33 146.0 175 44.0
Ciclev10017493m.g Citrus clementina HOM05D005423 ORTHO05D006223 7.5e-33 145.6 185 44.3
TWI38G0231 Tripterygium wilfordii HOM05D005423 ORTHO05D006223 9.8e-33 145.2 196 41.3
Gohir.D02G104700 Gossypium hirsutum HOM05D005423 ORTHO05D006223 1.3e-32 144.8 153 45.8
Gorai.005G118900 Gossypium raimondii HOM05D005423 ORTHO05D006223 1.3e-32 144.8 153 45.8
FvH4_3g11440 Fragaria vesca HOM05D005423 ORTHO05D006223 2.2e-32 144.1 155 47.7
Aqoxy2G01436 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 3.7e-32 143.3 158 47.5
Gohir.A02G088801 Gossypium hirsutum HOM05D005423 ORTHO05D006223 4.8e-32 142.9 153 44.4
Prupe.4G102300 Prunus persica HOM05D005423 ORTHO05D006223 4.8e-32 142.9 134 52.2
AUR62028667 Chenopodium quinoa HOM05D005423 ORTHO05D006223 6.3e-32 142.5 141 46.1
CiPaw.09G149100 Carya illinoinensis HOM05D005423 ORTHO05D006223 3.1e-31 140.2 173 46.8
FAN16G1003 Fragaria x ananassa HOM05D005423 ORTHO05D006223 4.1e-31 139.8 144 47.2
EL10Ac5g10610 Beta vulgaris HOM05D005423 ORTHO05D006223 5.4e-31 139.4 206 38.8
AUR62008092 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.6e-30 137.9 142 45.1
Sc04g0008360 Simmondsia chinensis HOM05D005423 ORTHO05D006223 2.7e-30 137.1 131 55.0
CANSAT35G1706 Cannabis sativa HOM05D005423 ORTHO05D006223 5.9e-30 136.0 192 44.8
AUR62008091 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.0e-29 135.2 135 45.9
AUR62028668 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.3e-29 134.8 189 40.7
AUR62008089 Chenopodium quinoa HOM05D005423 ORTHO05D006223 2.3e-29 134.0 181 42.5
QL05p063092 Quercus lobata HOM05D005423 ORTHO05D006223 6.6e-29 132.5 208 39.4
Ah.02g124440 Amaranthus hybridus HOM05D005423 ORTHO05D006223 5.5e-28 129.4 158 41.8
Glyma.15G191500 Glycine max HOM05D005423 ORTHO05D006223 9.5e-28 128.6 156 45.5
MBI19_g30013_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 3.6e-27 126.7 133 48.9
Thhalv10009325m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.4e-26 124.8 155 45.8
PSO782G2497 Papaver somniferum HOM05D005423 ORTHO05D006223 1.4e-26 124.8 140 47.9
Carub.0001s2910 Capsella rubella HOM05D005423 ORTHO05D006223 1.8e-26 124.4 139 48.2
AL1G44970 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 3.0e-26 123.6 140 47.9
COL.COLO4_26869 Corchorus olitorius HOM05D005423 ORTHO05D006223 4.0e-26 123.2 135 48.1
EL10Ac5g10640 Beta vulgaris HOM05D005423 ORTHO05D006223 6.8e-26 122.5 169 37.9
BcaB04g18206 Brassica carinata HOM05D005423 ORTHO05D006223 6.8e-26 122.5 251 35.9
EL10Ac5g10674 Beta vulgaris HOM05D005423 ORTHO05D006223 8.9e-26 122.1 168 38.7
Aa31LG6G12020 Aethionema arabicum HOM05D005423 ORTHO05D006223 1.2e-25 121.7 151 46.4
Carub.0006s3088 Capsella rubella HOM05D005423 ORTHO05D006223 1.5e-25 121.3 143 46.2
Lalb_Chr11g0073251 Lupinus albus HOM05D005423 ORTHO05D006223 1.5e-25 121.3 167 44.3
Sp1g26680 Schrenkiella parvula HOM05D005423 ORTHO05D006223 1.5e-25 121.3 164 45.7
CARHR030270 Cardamine hirsuta HOM05D005423 ORTHO05D006223 2.0e-25 120.9 135 47.4
A08p11040 Brassica napus HOM05D005423 ORTHO05D006223 2.6e-25 120.6 180 40.6
THA.LOC104814335 Tarenaya hassleriana HOM05D005423 ORTHO05D006223 3.4e-25 120.2 136 46.3
BcaC07g37806 Brassica carinata HOM05D005423 ORTHO05D006223 7.5e-25 119.0 187 40.1
BolC8t48195H Brassica oleracea HOM05D005423 ORTHO05D006223 7.5e-25 119.0 187 40.1
A06p18470 Brassica napus HOM05D005423 ORTHO05D006223 9.8e-25 118.6 136 46.3
Ca_02385_v3 Cicer arietinum L. HOM05D005423 ORTHO05D006223 1.3e-24 118.2 135 48.1
Sc21g0002200 Simmondsia chinensis HOM05D005423 ORTHO05D006223 1.3e-24 118.2 127 49.6
Lj6g0018842 Lotus japonicus HOM05D005423 ORTHO05D006223 2.8e-24 117.1 157 42.7
Psat1g018720 Pisum sativum HOM05D005423 ORTHO05D006223 3.7e-24 116.7 135 46.7
BraA08t33095Z Brassica rapa HOM05D005423 ORTHO05D006223 4.9e-24 116.3 187 39.0
Sabra16G0300100 Salix brachista HOM05D005423 ORTHO05D006223 4.9e-24 116.3 113 46.9
Sabra16G0298100 Salix brachista HOM05D005423 ORTHO05D006223 1.1e-23 115.2 113 46.0
Sc21g0002210 Simmondsia chinensis HOM05D005423 ORTHO05D006223 1.4e-23 114.8 168 41.7
AT1G30800 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 1.8e-23 114.4 142 44.4
BcaC07g39399 Brassica carinata HOM05D005423 ORTHO05D006223 1.8e-23 114.4 133 46.6
C08p24310 Brassica napus HOM05D005423 ORTHO05D006223 3.1e-23 113.6 133 45.9
BcaB01g00727 Brassica carinata HOM05D005423 ORTHO05D006223 4.1e-23 113.2 133 45.9
BolC8t50049H Brassica oleracea HOM05D005423 ORTHO05D006223 7.0e-23 112.5 133 45.9
Oeu063151.1 Olea europaea HOM05D005423 ORTHO05D006223 1.2e-22 111.7 116 52.6
MBI19_g33491_MAGBIO Magnolia biondii HOM05D005423 ORTHO05D006223 4.5e-22 109.8 116 50.9
TPR.G22906 Trifolium pratense HOM05D005423 ORTHO05D006223 4.5e-22 109.8 137 46.7
Haze_05969 Corylus avellana HOM05D005423 ORTHO05D006223 5.9e-22 109.4 160 39.4
CDE04G0856 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 2.9e-21 107.1 169 38.5
CDE04G2898 Ceratophyllum demersum HOM05D005423 ORTHO05D006223 5.0e-21 106.3 162 36.4
Oeu000496.1 Olea europaea HOM05D005423 ORTHO05D006223 1.1e-20 105.1 91 52.7
CARHR237890 Cardamine hirsuta HOM05D005423 ORTHO05D006223 2.5e-20 104.0 137 41.6
Medtr2g047120 Medicago truncatula HOM05D005423 ORTHO05D006223 4.3e-20 103.2 148 42.6
AUR62007135 Chenopodium quinoa HOM05D005423 ORTHO05D006223 1.6e-19 101.3 113 46.0
FAN25G0767 Fragaria x ananassa HOM05D005423 ORTHO05D006223 8.0e-19 99.0 102 48.0
FAN21G0600 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.0e-18 98.6 88 51.1
PSO210G3101 Papaver somniferum HOM05D005423 ORTHO05D006223 1.0e-18 98.6 155 38.7
Phvul.009G218400 Phaseolus vulgaris HOM05D005423 ORTHO05D006223 5.2e-18 96.3 99 52.5
Sp7g27780 Schrenkiella parvula HOM05D005423 ORTHO05D006223 8.9e-18 95.5 130 40.8
CDE02G2420 Ceratophyllum demersum HOM05D004257 ORTHO05D005202 1.2e-17 95.1 163 32.5
Thhalv10026388m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 1.2e-17 95.1 137 38.7
AL7G22260 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 4.4e-17 93.2 128 42.2
Carub.0007s1066 Capsella rubella HOM05D005423 ORTHO05D006223 4.4e-17 93.2 128 42.2
A03p59360 Brassica napus HOM05D005423 ORTHO05D006223 5.8e-17 92.8 137 38.0
BraA03t14993Z Brassica rapa HOM05D005423 ORTHO05D006223 5.8e-17 92.8 137 38.0
AT4G29980 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 7.5e-17 92.4 128 41.4
C07p57390 Brassica napus HOM05D005423 ORTHO05D006223 9.8e-17 92.0 137 38.0
BolC7t46208H Brassica oleracea HOM05D005423 ORTHO05D006223 9.8e-17 92.0 137 38.0
Potri.011G155150 Populus trichocarpa HOM05D005423 ORTHO05D006223 4.9e-16 89.7 124 37.9
FAN23G0143 Fragaria x ananassa HOM05D005423 ORTHO05D006223 8.3e-16 89.0 91 46.2
FAN18G3875 Fragaria x ananassa HOM05D005423 ORTHO05D006223 3.2e-15 87.0 95 46.3
Duzib043G0004 Durio zibethinus HOM05D005423 ORTHO05D006223 5.4e-15 86.3 137 36.5
FvH4_1g24910 Fragaria vesca HOM05D005423 ORTHO05D006223 7.0e-15 85.9 94 45.7
FvH4_5g18240 Fragaria vesca HOM05D005423 ORTHO05D006223 7.0e-15 85.9 95 45.3
BcaNung00507 Brassica carinata HOM05D005423 ORTHO05D006223 1.2e-14 85.1 138 37.0
FvH4_5g21920 Fragaria vesca HOM05D005423 ORTHO05D006223 1.3e-13 81.6 96 41.7
Mapoly0033s0033 Marchantia polymorpha HOM05D005423 ORTHO05D006223 1.9e-12 77.8 165 32.1
Aqoxy7G03258 Aquilegia oxysepala HOM05D005423 ORTHO05D006223 4.3e-12 76.6 99 44.4
BcaC07g40588 Brassica carinata HOM05D005423 ORTHO05D006223 4.3e-12 76.6 60 58.3
DCAR_001448 Daucus carota HOM05D005423 ORTHO05D006223 6.2e-11 72.8 170 30.6
BcaC09g50401 Brassica carinata HOM05D005423 ORTHO05D006223 2.3e-10 70.9 60 51.7
Thhalv10027436m.g Eutrema salsugineum HOM05D005423 ORTHO05D006223 2.3e-10 70.9 116 31.9
AT4G12950 Arabidopsis thaliana HOM05D005423 ORTHO05D006223 5.2e-10 69.7 136 32.4
Solyc01g057590.3 Solanum lycopersicum HOM05D030979 ORTHO05D030659 1.5e-09 68.2 132 40.2
A09p38220 Brassica napus HOM05D005423 ORTHO05D006223 2.0e-09 67.8 57 54.4
Aqoxy6G00392 Aquilegia oxysepala HOM05D005305 ORTHO05D006394 3.4e-09 67.0 184 28.3
A06p11170 Brassica napus HOM05D005305 ORTHO05D006394 3.4e-09 67.0 153 30.1
SMO220G0003 Selaginella moellendorffii HOM05D002232 ORTHO05D002323 9.8e-09 65.5 159 30.8
BolC5t30066H Brassica oleracea HOM05D005305 ORTHO05D006394 1.7e-08 64.7 153 30.1
FAN11G1050 Fragaria x ananassa HOM05D005423 ORTHO05D006223 1.7e-08 64.7 71 47.9
BcaB02g06584 Brassica carinata HOM05D005305 ORTHO05D006394 2.2e-08 64.3 153 29.4
FAN18G0575 Fragaria x ananassa HOM05D005423 ORTHO05D006223 2.2e-08 64.3 70 47.1
BraA06t24297Z Brassica rapa HOM05D005305 ORTHO05D006394 2.9e-08 63.9 153 29.4
DCAR_002955 Daucus carota HOM05D005423 ORTHO05D006223 4.9e-08 63.2 89 37.1
FAN03G0475 Fragaria x ananassa HOM05D005423 ORTHO05D006223 4.9e-08 63.2 70 47.1
FAN14G5542 Fragaria x ananassa HOM05D005423 ORTHO05D006223 4.9e-08 63.2 70 47.1
Nn5g28774 Nelumbo nucifera HOM05D005305 ORTHO05D006394 6.4e-08 62.8 200 26.0
PGSC0003DMG400006617 Solanum tuberosum HOM05D030979 ORTHO05D030659 6.4e-08 62.8 73 47.9
Nitab4.5_0009996g0030 Nicotiana tabacum HOM05D007205 ORTHO05D009175 8.3e-08 62.4 108 32.4
Sp7g28070 Schrenkiella parvula HOM05D005423 ORTHO05D006223 1.1e-07 62.0 104 35.6
PGSC0003DMG400046543 Solanum tuberosum HOM05D030979 ORTHO05D030659 1.1e-07 62.0 138 38.4
FvH4_6g29350 Fragaria vesca HOM05D005423 ORTHO05D006223 1.4e-07 61.6 72 41.7
TWI31G0537 Tripterygium wilfordii HOM05D005305 ORTHO05D006394 1.4e-07 61.6 212 27.8
Pp3c1_4130 Physcomitrium patens HOM05D022662 ORTHO05D006223 1.9e-07 61.2 160 30.0
Sp1g13500 Schrenkiella parvula HOM05D005305 ORTHO05D006394 5.4e-07 59.7 153 30.7
A03p59580 Brassica napus HOM05D005423 ORTHO05D006223 7.0e-07 59.3 135 31.1
Pp3c3_10930 Physcomitrium patens HOM05D022662 ORTHO05D006223 9.2e-07 58.9 140 25.7
CARHR238100 Cardamine hirsuta HOM05D005423 ORTHO05D006223 1.2e-06 58.5 71 40.8
Pp3c6_3400 Physcomitrium patens HOM05D005423 ORTHO05D006223 1.2e-06 58.5 155 30.3
AL7G23530 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 1.6e-06 58.2 72 37.5
AL7G23570 Arabidopsis lyrata HOM05D005423 ORTHO05D006223 2.1e-06 57.8 65 40.0
BcaC05g25447 Brassica carinata HOM05D005305 ORTHO05D006394 2.1e-06 57.8 154 29.2
C05p13290 Brassica napus HOM05D005305 ORTHO05D006394 2.1e-06 57.8 154 29.2
CSS0002540 Camellia sinensis var. sinensis HOM05D007205 ORTHO05D009175 2.7e-06 57.4 69 31.9
ClCG09G014160 Citrullus lanatus HOM05D005305 ORTHO05D006394 2.7e-06 57.4 197 28.4
Prupe.3G306500 Prunus persica HOM05D002727 ORTHO05D002856 3.5e-06 57.0 135 34.1
TAR624G0561 Trochodendron aralioides HOM05D005305 ORTHO05D006394 3.5e-06 57.0 140 28.6
SalBow5G2993 Salvia bowleyana HOM05D005305 ORTHO05D006394 4.6e-06 56.6 206 28.6
Lsat_1_v5_gn_7_79481 Lactuca sativa HOM05D005305 ORTHO05D006394 6.0e-06 56.2 188 28.2
TAR381G1643 Trochodendron aralioides HOM05D005305 ORTHO05D006394 6.0e-06 56.2 128 32.0
BraA03t15014Z Brassica rapa HOM05D005423 ORTHO05D006223 7.8e-06 55.8 71 38.0


User provided reference genes

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