Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g072400.3 Solanum lycopersicum HOM05D005177 ORTHO05D006175 4.5e-236 820.8 412 100.0
Sopen11g030050 Solanum pennellii HOM05D005177 ORTHO05D006175 5.9e-228 793.9 412 97.3
PGSC0003DMG400027405 Solanum tuberosum HOM05D005177 ORTHO05D006175 2.2e-222 775.4 412 94.4
Nitab4.5_0002129g0070 Nicotiana tabacum HOM05D005177 ORTHO05D006175 2.3e-179 632.5 404 80.9
CAN.G553.3 Capsicum annuum HOM05D005177 ORTHO05D006175 5.5e-157 558.1 307 87.9
Nitab4.5_0001802g0050 Nicotiana tabacum HOM05D005177 ORTHO05D006175 6.7e-155 551.2 364 78.6
Peaxi162Scf00389g00939 Petunia axillaris HOM05D005177 ORTHO05D006175 5.7e-154 548.1 416 71.9
Dinv32787 Davidia involucrata HOM05D005177 ORTHO05D006175 1.7e-142 510.0 390 65.9
Prupe.6G094900 Prunus persica HOM05D005177 ORTHO05D006175 2.8e-137 492.7 401 63.1
TAR636G0661 Trochodendron aralioides HOM05D005177 ORTHO05D006175 3.1e-136 489.2 390 63.3
Cc01_g11530 Coffea canephora HOM05D005177 ORTHO05D006175 1.7e-134 483.4 409 60.4
MD03G1105200 Malus domestica HOM05D005177 ORTHO05D006175 1.7e-134 483.4 413 62.0
Duzib168G0988 Durio zibethinus HOM05D005177 ORTHO05D006175 2.2e-134 483.0 410 62.4
COL.COLO4_25245 Corchorus olitorius HOM05D005177 ORTHO05D006175 1.6e-132 476.9 413 60.0
Migut.D02184 Erythranthe guttata HOM05D005177 ORTHO05D006175 6.1e-132 474.9 399 60.4
Nn2g10682 Nelumbo nucifera HOM05D005177 ORTHO05D006175 8.0e-132 474.6 411 60.3
QL01p037260 Quercus lobata HOM05D005177 ORTHO05D006175 5.2e-131 471.9 401 60.1
Cfa011363 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.3e-129 467.2 384 62.8
Oeu005908.1 Olea europaea HOM05D005177 ORTHO05D006175 2.2e-129 466.5 402 62.2
RcHm_v2.0_Chr5g0060611 Rosa chinensis HOM05D005177 ORTHO05D006175 4.8e-129 465.3 398 60.1
Gohir.D02G184700 Gossypium hirsutum HOM05D005177 ORTHO05D006175 6.3e-129 464.9 398 60.6
Gorai.005G207000 Gossypium raimondii HOM05D005177 ORTHO05D006175 6.3e-129 464.9 398 60.6
Actinidia03746 Actinidia chinensis HOM05D005177 ORTHO05D006175 1.6e-127 460.3 400 59.2
vmacro14462 Vaccinium macrocarpon HOM05D005177 ORTHO05D006175 3.5e-127 459.1 394 59.9
MSTRG.18639 Avicennia marina HOM05D005177 ORTHO05D006175 7.7e-127 458.0 380 62.6
TWI79G0119 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 7.7e-127 458.0 408 59.6
Thecc.09G260100 Theobroma cacao HOM05D005177 ORTHO05D006175 2.2e-126 456.4 387 60.2
GSVIVG01025137001 Vitis vinifera HOM05D005177 ORTHO05D006175 2.9e-126 456.1 374 63.1
TWI31G0237 Tripterygium wilfordii HOM05D005177 ORTHO05D006175 1.9e-125 453.4 405 59.5
Duzib170G1166 Durio zibethinus HOM05D005177 ORTHO05D006175 1.2e-124 450.7 423 56.7
Manes.11G141500 Manihot esculenta HOM05D005177 ORTHO05D006175 4.7e-124 448.7 409 58.2
PSO339G4756 Papaver somniferum HOM05D005177 ORTHO05D006175 8.0e-124 448.0 398 59.0
Atru.chr3.3689 Acer truncatum HOM05D005177 ORTHO05D006175 1.2e-122 444.1 395 59.2
Cpa.g.sc139.70 Carica papaya HOM05D005177 ORTHO05D006175 2.6e-122 443.0 398 59.3
unitig_899.g14907 Utricularia gibba HOM05D005177 ORTHO05D006175 4.4e-122 442.2 403 58.1
Rhsim01G0220100 Rhododendron simsii HOM05D005177 ORTHO05D006175 1.4e-120 437.2 362 61.6
Ciclev10028554m.g Citrus clementina HOM05D005177 ORTHO05D006175 1.8e-120 436.8 379 57.8
PGR102G1116 Punica granatum HOM05D005177 ORTHO05D006175 3.1e-120 436.0 393 58.0
CANSAT54G2759 Cannabis sativa HOM05D005177 ORTHO05D006175 5.9e-119 431.8 391 55.8
PSO063G2407 Papaver somniferum HOM05D005177 ORTHO05D006175 1.7e-118 430.3 440 54.1
Aqoxy4G03211 Aquilegia oxysepala HOM05D005177 ORTHO05D006175 9.5e-117 424.5 412 53.2
TPR.G14917 Trifolium pratense HOM05D005177 ORTHO05D006175 3.0e-115 419.5 406 53.4
Glyma.11G153378 Glycine max HOM05D005177 ORTHO05D006175 8.9e-115 417.9 397 55.9
Phvul.011G072700 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 2.0e-114 416.8 377 57.3
DCAR_006046 Daucus carota HOM05D005177 ORTHO05D006175 9.8e-114 414.5 361 58.4
VMungo1127G2232 Vigna mungo HOM05D005177 ORTHO05D006175 1.3e-113 414.1 394 56.1
Psat0s137g0200 Pisum sativum HOM05D005177 ORTHO05D006175 1.1e-112 411.0 382 55.2
MELO3C025749.2 Cucumis melo HOM05D005177 ORTHO05D006175 1.4e-112 410.6 384 55.2
Lj3g0023073 Lotus japonicus HOM05D005177 ORTHO05D006175 9.2e-112 407.9 397 53.4
Cfa011364 Carpinus fangiana HOM05D005177 ORTHO05D006175 1.2e-111 407.5 385 54.5
Dinv14445 Davidia involucrata HOM05D005177 ORTHO05D006175 1.0e-110 404.4 347 61.1
FvH4_3g33260 Fragaria vesca HOM05D005177 ORTHO05D006175 3.0e-110 402.9 378 56.3
THA.LOC104814837 Tarenaya hassleriana HOM05D005177 ORTHO05D006175 5.0e-110 402.1 401 53.1
CiPaw.13G107400 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.5e-109 400.6 352 58.5
Lsat_1_v5_gn_2_50980 Lactuca sativa HOM05D005177 ORTHO05D006175 5.6e-109 398.7 391 54.2
ClCG02G020960 Citrullus lanatus HOM05D005177 ORTHO05D006175 7.3e-109 398.3 408 52.9
CiPaw.13G107500 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.6e-108 397.1 316 63.6
Medtr4g060790 Medicago truncatula HOM05D005177 ORTHO05D006175 1.4e-107 394.0 384 53.4
Lalb_Chr01g0004161 Lupinus albus HOM05D005177 ORTHO05D006175 2.0e-106 390.2 377 55.7
BcaB05g22637 Brassica carinata HOM05D000280 ORTHO05D000632 7.5e-106 388.3 416 50.0
BcaC03g13978 Brassica carinata HOM05D005177 ORTHO05D006175 7.5e-106 388.3 401 52.1
AL8G36980 Arabidopsis lyrata HOM05D005177 ORTHO05D006175 9.8e-106 387.9 404 51.5
arahy.Tifrunner.gnm1.ann1.X56S8K Arachis hypogaea HOM05D005177 ORTHO05D006175 9.8e-106 387.9 422 50.9
BraA02t05734Z Brassica rapa HOM05D005177 ORTHO05D006175 9.8e-106 387.9 402 51.5
RcHm_v2.0_Chr5g0060621 Rosa chinensis HOM05D005177 ORTHO05D006175 1.7e-105 387.1 393 52.7
AT5G60370 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 1.1e-104 384.4 403 50.4
Eucgr.B02471 Eucalyptus grandis HOM05D005177 ORTHO05D006175 1.9e-104 383.6 374 52.1
CiPaw.13G107200 Carya illinoinensis HOM05D005177 ORTHO05D006175 2.4e-104 383.3 414 51.4
Sp6g21970 Schrenkiella parvula HOM05D005177 ORTHO05D006175 2.4e-104 383.3 391 50.6
arahy.Tifrunner.gnm1.ann1.Q9R44R Arachis hypogaea HOM05D005177 ORTHO05D006175 3.2e-104 382.9 422 50.5
CsaV3_6G021650 Cucumis sativus L. HOM05D005177 ORTHO05D006175 3.2e-104 382.9 380 51.6
BolC2t07273H Brassica oleracea HOM05D005177 ORTHO05D006175 7.0e-104 381.7 383 53.0
Aa31LG1G12430 Aethionema arabicum HOM05D005177 ORTHO05D006175 9.2e-104 381.3 402 50.5
Carub.0008s2107 Capsella rubella HOM05D005177 ORTHO05D006175 2.0e-103 380.2 389 51.4
Hund08273 Selenicereus undatus HOM05D005177 ORTHO05D006175 2.0e-103 380.2 426 50.0
Haze_23912 Corylus avellana HOM05D005177 ORTHO05D006175 2.7e-103 379.8 382 54.2
Ah.01g015010 Amaranthus hybridus HOM05D005177 ORTHO05D006175 1.3e-102 377.5 395 49.9
Thhalv10013696m.g Eutrema salsugineum HOM05D005177 ORTHO05D006175 5.0e-102 375.6 402 49.5
Haze_23911 Corylus avellana HOM05D005177 ORTHO05D006175 8.6e-102 374.8 396 52.8
Sc06g0010530 Simmondsia chinensis HOM05D005177 ORTHO05D006175 5.6e-101 372.1 368 54.3
CiPaw.13G107600 Carya illinoinensis HOM05D005177 ORTHO05D006175 1.2e-100 370.9 259 66.0
Lj3g0021588 Lotus japonicus HOM05D005177 ORTHO05D006175 1.4e-99 367.5 397 49.9
AUR62006522 Chenopodium quinoa HOM05D005177 ORTHO05D006175 6.8e-99 365.2 380 52.1
Sed0002828 Sechium edule HOM05D005177 ORTHO05D005441 1.7e-97 360.5 379 52.0
Dinv01415 Davidia involucrata HOM05D005177 ORTHO05D006175 2.2e-97 360.1 252 69.0
Gohir.A03G161400 Gossypium hirsutum HOM05D005177 ORTHO05D006175 3.5e-95 352.8 313 60.7
SGA_v2.0_scaffold97G29176 Striga asiatica HOM05D005177 ORTHO05D006175 6.0e-95 352.1 415 50.6
Os05g0123300 Oryza sativa ssp. japonica HOM05D005177 ORTHO05D006175 1.0e-94 351.3 398 46.5
ATR1159G017 Amborella trichopoda HOM05D005177 ORTHO05D006175 1.1e-93 347.8 400 47.0
EL10Ac9g22467 Beta vulgaris HOM05D005177 ORTHO05D006175 1.1e-93 347.8 397 48.6
ECA238G1817 Erigeron canadensis HOM05D000382 ORTHO05D000391 5.6e-93 345.5 387 50.1
SHI06048 Sapria himalayana HOM05D005177 ORTHO05D006175 2.8e-92 343.2 369 49.6
Psat6g221840 Pisum sativum HOM05D005177 ORTHO05D006175 3.6e-92 342.8 403 47.4
HanXRQChr14g0433031 Helianthus annuus HOM05D005177 ORTHO05D006175 4.7e-92 342.4 368 51.9
Zm00001eb265420 Zea mays HOM05D005177 ORTHO05D006175 4.7e-92 342.4 383 47.3
QL01p037225 Quercus lobata HOM05D005177 ORTHO05D006175 5.2e-91 339.0 456 43.9
Phvul.007G036300 Phaseolus vulgaris HOM05D005177 ORTHO05D006175 4.9e-89 332.4 355 49.0
CSS0008980 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D006175 8.4e-89 331.6 233 66.5
Ca_11098_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 1.1e-88 331.3 410 45.9
Haze_23910 Corylus avellana HOM05D005177 ORTHO05D006175 1.2e-84 317.8 378 47.9
FAN21G0634 Fragaria x ananassa HOM05D005177 ORTHO05D006175 4.7e-84 315.8 376 48.7
VMungo0251G1016 Vigna mungo HOM05D005177 ORTHO05D006175 4.0e-83 312.8 389 46.3
QL01p037240 Quercus lobata HOM05D005177 ORTHO05D006175 6.8e-83 312.0 253 59.7
CDE04G2914 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 9.9e-82 308.1 373 48.0
C02p11760 Brassica napus HOM05D005177 ORTHO05D006175 3.2e-80 303.1 259 56.0
Mapoly0004s0234 Marchantia polymorpha HOM05D005177 ORTHO05D006175 3.5e-79 299.7 316 46.8
Medtr1g062090 Medicago truncatula HOM05D005177 ORTHO05D006175 1.5e-77 294.3 398 43.0
SMO143G0224 Selaginella moellendorffii HOM05D005177 ORTHO05D006175 9.6e-77 291.6 375 42.1
PSO339G4079 Papaver somniferum HOM05D005177 ORTHO05D006175 2.1e-76 290.4 303 50.2
Pp3c24_6040 Physcomitrium patens HOM05D005177 ORTHO05D006175 6.2e-76 288.9 284 48.9
TPR.G4931 Trifolium pratense HOM05D005177 ORTHO05D006175 1.8e-75 287.3 405 41.5
PSO384G3506 Papaver somniferum HOM05D005177 ORTHO05D006175 2.4e-75 287.0 307 48.9
Lj5g0027081 Lotus japonicus HOM05D005177 ORTHO05D006175 3.4e-74 283.1 296 49.3
CARHR274040 Cardamine hirsuta HOM05D005177 ORTHO05D006175 6.4e-73 278.9 289 52.6
Lj2C1035T4 Lonicera japonica HOM05D005177 ORTHO05D006175 1.9e-64 250.8 188 66.5
Lalb_Chr06g0165641 Lupinus albus HOM05D005177 ORTHO05D006175 5.5e-64 249.2 358 41.9
Ca_19242_v3 Cicer arietinum L. HOM05D005177 ORTHO05D006175 6.7e-62 242.3 181 60.8
CBR_g2921 Chara braunii HOM05D005177 ORTHO05D006175 1.5e-61 241.1 275 42.9
Lalb_Chr03g0027131 Lupinus albus HOM05D005177 ORTHO05D006175 2.8e-60 236.9 253 53.0
MD11G1130000 Malus domestica HOM05D005177 ORTHO05D006175 1.9e-56 224.2 178 59.0
AUR62025012 Chenopodium quinoa HOM05D005177 ORTHO05D006175 5.1e-54 216.1 183 54.6
CDE07G1541 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 1.7e-49 201.1 223 56.1
HPP92_013896 Vanilla planifolia HOM05D005177 ORTHO05D006175 2.7e-47 193.7 244 47.5
Lalb_Chr03g0027121 Lupinus albus HOM05D005177 ORTHO05D006175 1.2e-42 178.3 134 60.4
Glyma.20G125100 Glycine max HOM05D005177 ORTHO05D006175 1.7e-41 174.5 225 43.6
Aqoxy230s004 Aquilegia oxysepala HOM05D000156 ORTHO05D002600 1.3e-33 148.3 112 60.7
MD12G1113200 Malus domestica HOM05D005177 ORTHO05D006175 1.8e-27 127.9 106 56.6
SalBow7G3352 Salvia bowleyana HOM05D005177 ORTHO05D006175 7.0e-27 125.9 158 46.8
AUR62033196 Chenopodium quinoa HOM05D005177 ORTHO05D006175 9.1e-27 125.6 101 57.4
Lj2A1035T47 Lonicera japonica HOM05D005177 ORTHO05D006175 2.0e-26 124.4 168 48.8
MD03G1203800 Malus domestica HOM05D005177 ORTHO05D006175 2.0e-26 124.4 106 55.7
MD02G1279000 Malus domestica HOM05D005177 ORTHO05D006175 5.9e-26 122.9 106 56.6
SalBow2G1018 Salvia bowleyana HOM05D005177 ORTHO05D006175 6.5e-25 119.4 108 54.6
AUR62037383 Chenopodium quinoa HOM05D005177 ORTHO05D006175 8.5e-25 119.0 101 52.5
SalBow8G4533 Salvia bowleyana HOM05D005177 ORTHO05D006175 1.6e-23 114.8 86 64.0
CDE07G0204 Ceratophyllum demersum HOM05D005177 ORTHO05D006175 6.1e-23 112.8 89 61.8
SEGI_18444 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 6.7e-22 109.4 77 64.9
MD11G1130200 Malus domestica HOM05D005177 ORTHO05D008128 1.5e-21 108.2 107 56.1
SEGI_09926 Sequoiadendron giganteum HOM05D005177 ORTHO05D006175 2.0e-13 81.3 96 38.5
CSS0040502 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 6.3e-12 76.3 149 43.6
QL01p037253 Quercus lobata HOM05D005177 ORTHO05D033885 6.3e-12 76.3 137 45.3
CSS0013492 Camellia sinensis var. sinensis HOM05D005177 ORTHO05D033885 1.3e-09 68.6 145 41.4
MD02G1245500 Malus domestica HOM05D005177 ORTHO05D006175 8.0e-07 59.3 42 66.7
AT3G57110 Arabidopsis thaliana HOM05D005177 ORTHO05D006175 2.3e-06 57.8 134 34.3


User provided reference genes

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