Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g072300.2 Solanum lycopersicum HOM05D005135 ORTHO05D005810 8.6e-132 473.8 260 100.0
Sopen11g029970 Solanum pennellii HOM05D005135 ORTHO05D005810 3.1e-129 465.3 260 98.1
PGSC0003DMG400027379 Solanum tuberosum HOM05D005135 ORTHO05D005810 2.6e-120 435.6 255 93.7
CAN.G1187.4 Capsicum annuum HOM05D005135 ORTHO05D005810 4.7e-114 414.8 263 88.6
Peaxi162Scf00557g00212 Petunia axillaris HOM05D005135 ORTHO05D005810 3.8e-103 378.6 259 81.5
Nitab4.5_0000205g0180 Nicotiana tabacum HOM05D005135 ORTHO05D005810 3.0e-100 369.0 272 77.9
CAN.G1182.3 Capsicum annuum HOM05D005135 ORTHO05D005810 8.1e-90 334.3 266 74.4
Sopen03g002840 Solanum pennellii HOM05D005135 ORTHO05D005810 5.3e-89 331.6 267 73.4
Solyc03g006850.3 Solanum lycopersicum HOM05D005135 ORTHO05D005810 2.6e-88 329.3 267 73.0
Nitab4.5_0001573g0020 Nicotiana tabacum HOM05D005135 ORTHO05D005810 2.9e-87 325.9 261 73.2
Thecc.03G166900 Theobroma cacao HOM05D005135 ORTHO05D005810 6.2e-82 308.1 254 69.3
Hma1.2p1_0488F.1_g163940 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 9.0e-81 304.3 263 67.3
Actinidia31800 Actinidia chinensis HOM05D005135 ORTHO05D005810 4.5e-80 302.0 261 67.4
unitig_52.g17751 Utricularia gibba HOM05D005135 ORTHO05D005810 4.5e-80 302.0 265 66.0
Dinv35139 Davidia involucrata HOM05D005135 ORTHO05D005810 5.8e-80 301.6 263 66.9
vmacro09870 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 1.7e-79 300.1 264 66.3
Duzib068G0893 Durio zibethinus HOM05D005135 ORTHO05D005810 6.5e-79 298.1 254 67.3
VMungo0720G1039 Vigna mungo HOM05D005135 ORTHO05D005810 8.4e-79 297.7 254 67.7
Duzib084G0614 Durio zibethinus HOM05D005135 ORTHO05D005810 1.1e-78 297.4 254 67.7
Gohir.A12G262200 Gossypium hirsutum HOM05D005135 ORTHO05D005810 3.2e-78 295.8 254 67.7
Gohir.D12G262900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 4.2e-78 295.4 254 67.7
Gorai.008G281800 Gossypium raimondii HOM05D005135 ORTHO05D005810 5.5e-78 295.0 254 67.7
Migut.F01160 Erythranthe guttata HOM05D005135 ORTHO05D005810 4.6e-77 292.0 257 68.5
Oeu030142.1 Olea europaea HOM05D005135 ORTHO05D005810 7.9e-77 291.2 272 64.3
Oeu022533.1 Olea europaea HOM05D005135 ORTHO05D005810 1.0e-76 290.8 275 63.6
Phvul.007G065300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 2.3e-76 289.7 254 66.9
CiPaw.03G100200 Carya illinoinensis HOM05D005135 ORTHO05D005810 8.7e-76 287.7 249 67.1
GSVIVG01018448001 Vitis vinifera HOM05D005135 ORTHO05D005810 8.7e-76 287.7 254 64.6
CSS0048110 Camellia sinensis var. sinensis HOM05D005135 ORTHO05D005810 1.6e-74 283.5 261 64.8
COL.COLO4_14228 Corchorus olitorius HOM05D005135 ORTHO05D005810 1.6e-74 283.5 254 65.0
Potri.015G135000 Populus trichocarpa HOM05D005135 ORTHO05D005810 2.1e-74 283.1 261 63.6
MSTRG.8780 Avicennia marina HOM05D005135 ORTHO05D005810 3.7e-74 282.3 261 62.8
Gohir.D08G104900 Gossypium hirsutum HOM05D005135 ORTHO05D005810 3.7e-74 282.3 263 64.3
Glyma.10G240700 Glycine max HOM05D005135 ORTHO05D005810 1.4e-73 280.4 254 65.0
Oeu030256.1 Olea europaea HOM05D005135 ORTHO05D005810 1.8e-73 280.0 268 63.4
Eucgr.K00188 Eucalyptus grandis HOM05D005135 ORTHO05D005810 5.3e-73 278.5 262 62.6
PSO782G0956 Papaver somniferum HOM05D005135 ORTHO05D005810 6.9e-73 278.1 254 66.5
MELO3C006858.2 Cucumis melo HOM05D005135 ORTHO05D005810 1.2e-72 277.3 254 63.8
ClCG05G007690 Citrullus lanatus HOM05D005135 ORTHO05D005810 2.6e-72 276.2 254 63.4
FAN01G0847 Fragaria x ananassa HOM05D005135 ORTHO05D005810 4.5e-72 275.4 257 62.3
Manes.14G031000 Manihot esculenta HOM05D005135 ORTHO05D005810 5.0e-71 271.9 252 63.9
CsaV3_3G016630 Cucumis sativus L. HOM05D005135 ORTHO05D005810 6.5e-71 271.6 254 63.0
Sed0024541 Sechium edule HOM05D005135 ORTHO05D005810 1.1e-70 270.8 250 62.4
SGA_v2.0_scaffold10G05426 Striga asiatica HOM05D005135 ORTHO05D005810 1.4e-70 270.4 265 64.5
Nn1g01287 Nelumbo nucifera HOM05D005135 ORTHO05D005810 2.5e-70 269.6 266 62.0
Gohir.A08G093700 Gossypium hirsutum HOM05D005135 ORTHO05D005810 3.2e-70 269.2 263 62.4
Lalb_Chr06g0160891 Lupinus albus HOM05D005135 ORTHO05D005810 9.3e-70 267.7 253 61.7
A03p16010 Brassica napus HOM05D005135 ORTHO05D005810 1.6e-69 266.9 252 61.9
TAR629G2517 Trochodendron aralioides HOM05D005135 ORTHO05D005810 2.7e-69 266.2 264 61.7
Glyma.20G154000 Glycine max HOM05D005135 ORTHO05D005810 4.6e-69 265.4 253 62.5
SGA_v2.0_scaffold303G47872 Striga asiatica HOM05D005135 ORTHO05D005810 4.6e-69 265.4 314 55.1
TWI23G0093 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 6.1e-69 265.0 248 62.5
Sabra15G0147000 Salix brachista HOM05D005135 ORTHO05D005810 7.9e-69 264.6 288 57.3
ATR0661G043 Amborella trichopoda HOM05D005135 ORTHO05D005810 3.0e-68 262.7 254 61.4
Lj1A988G25 Lonicera japonica HOM05D005135 ORTHO05D005810 3.0e-68 262.7 227 68.7
BcaC01g06140 Brassica carinata HOM05D005135 ORTHO05D005810 1.5e-67 260.4 252 61.1
arahy.Tifrunner.gnm1.ann1.UR3NDK Arachis hypogaea HOM05D005135 ORTHO05D005810 1.9e-67 260.0 248 62.1
BolC3t14274H Brassica oleracea HOM05D005135 ORTHO05D005810 2.5e-67 259.6 253 61.3
BraA03t10892Z Brassica rapa HOM05D005135 ORTHO05D005810 2.5e-67 259.6 253 62.1
C03p18840 Brassica napus HOM05D005135 ORTHO05D005810 4.3e-67 258.8 252 60.7
Ciclev10005677m.g Citrus clementina HOM05D005135 ORTHO05D005810 4.3e-67 258.8 256 60.9
RcHm_v2.0_Chr1g0376221 Rosa chinensis HOM05D005135 ORTHO05D005810 5.7e-67 258.5 263 58.6
FAN03G3482 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.3e-66 257.3 257 58.8
Sc13g0008230 Simmondsia chinensis HOM05D005135 ORTHO05D005810 1.3e-66 257.3 254 60.6
FAN06G3133 Fragaria x ananassa HOM05D005135 ORTHO05D005810 1.7e-66 256.9 257 58.8
FAN10G2880 Fragaria x ananassa HOM05D005135 ORTHO05D005810 2.2e-66 256.5 290 54.1
FAN06G4903 Fragaria x ananassa HOM05D005135 ORTHO05D005810 3.7e-66 255.8 257 58.4
arahy.Tifrunner.gnm1.ann1.3G6IEL Arachis hypogaea HOM05D005135 ORTHO05D005810 4.8e-66 255.4 248 61.3
Prupe.2G287200 Prunus persica HOM05D005135 ORTHO05D005810 6.3e-66 255.0 251 61.8
Cc02_g03590 Coffea canephora HOM05D005135 ORTHO05D005810 8.2e-66 254.6 266 59.4
Hund04685 Selenicereus undatus HOM05D005135 ORTHO05D005810 1.1e-65 254.2 256 58.6
Lj5g0000742 Lotus japonicus HOM05D005135 ORTHO05D005810 6.9e-65 251.5 253 59.3
CDE07G1455 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 9.1e-65 251.1 254 58.7
Rhsim09G0195100 Rhododendron simsii HOM05D000559 ORTHO05D005810 9.1e-65 251.1 230 66.1
Aqoxy7G00498 Aquilegia oxysepala HOM05D005135 ORTHO05D005810 1.2e-64 250.8 264 60.2
Sed0023089 Sechium edule HOM05D005135 ORTHO05D005810 1.2e-64 250.8 257 56.8
EL10Ac3g05742 Beta vulgaris HOM05D005135 ORTHO05D005810 1.5e-64 250.4 255 59.2
HanXRQChr14g0461821 Helianthus annuus HOM05D005135 ORTHO05D005810 1.5e-64 250.4 247 61.1
PSO478G0331 Papaver somniferum HOM05D005135 ORTHO05D005810 1.5e-64 250.4 254 62.6
PGR142G1544 Punica granatum HOM05D005135 ORTHO05D005810 2.0e-64 250.0 253 60.9
FvH4_7g28720 Fragaria vesca HOM05D005135 ORTHO05D005810 7.7e-64 248.1 251 58.2
VMungo0464G2082 Vigna mungo HOM05D000559 ORTHO05D005810 1.0e-63 247.7 266 59.4
Ca_10813_v3 Cicer arietinum L. HOM05D005135 ORTHO05D005810 2.2e-63 246.5 251 60.2
TWI39G0390 Tripterygium wilfordii HOM05D005135 ORTHO05D005810 2.2e-63 246.5 248 60.5
AUR62021268 Chenopodium quinoa HOM05D005135 ORTHO05D005810 6.5e-63 245.0 263 57.4
Aa31LG3G8280 Aethionema arabicum HOM05D005135 ORTHO05D005810 8.5e-63 244.6 256 59.0
ECA238G2105 Erigeron canadensis HOM05D005135 ORTHO05D005810 1.1e-62 244.2 247 60.3
Sp6g14090 Schrenkiella parvula HOM05D005135 ORTHO05D005810 7.2e-62 241.5 251 57.8
Ah.07g208790 Amaranthus hybridus HOM05D005135 ORTHO05D005810 9.4e-62 241.1 253 57.3
MD01G1193100 Malus domestica HOM05D005135 ORTHO05D005810 1.6e-61 240.4 255 58.4
Dinv28508 Davidia involucrata HOM05D005135 ORTHO05D005810 2.1e-61 240.0 161 79.5
BcaB08g35536 Brassica carinata HOM05D005135 ORTHO05D005810 3.6e-61 239.2 253 57.3
CARHR264720 Cardamine hirsuta HOM05D005135 ORTHO05D005810 3.6e-61 239.2 251 57.0
Psat7g169320 Pisum sativum HOM05D005135 ORTHO05D005810 3.6e-61 239.2 247 59.5
Thhalv10014510m.g Eutrema salsugineum HOM05D005135 ORTHO05D005810 7.9e-61 238.0 251 57.4
Carub.0008s1186 Capsella rubella HOM05D005135 ORTHO05D005810 5.1e-60 235.3 256 57.0
MD00G1004200 Malus domestica HOM05D005135 ORTHO05D005810 8.8e-60 234.6 249 58.6
AL8G26130 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 1.5e-59 233.8 251 56.2
Medtr1g101945 Medicago truncatula HOM05D005135 ORTHO05D005810 1.5e-59 233.8 248 57.7
AT5G51840 Arabidopsis thaliana HOM05D005135 ORTHO05D005810 2.6e-59 233.0 254 57.5
Rhsim03G0174700 Rhododendron simsii HOM05D000559 ORTHO05D000596 2.6e-59 233.0 263 56.7
BcaB01g04154 Brassica carinata HOM05D005135 ORTHO05D005810 5.7e-59 231.9 255 56.9
Zm00001eb027200 Zea mays HOM05D005135 ORTHO05D005810 1.8e-57 226.9 246 56.5
Gohir.D04G141600 Gossypium hirsutum HOM05D005135 ORTHO05D005810 6.9e-57 224.9 169 74.6
HPP92_001726 Vanilla planifolia HOM05D005135 ORTHO05D005810 6.9e-57 224.9 254 55.5
HPP92_001719 Vanilla planifolia HOM05D005135 ORTHO05D005810 9.1e-57 224.6 255 54.1
PGR042G3048 Punica granatum HOM05D005135 ORTHO05D005810 1.2e-56 224.2 148 81.1
Lsat_1_v5_gn_2_130120 Lactuca sativa HOM05D005135 ORTHO05D005810 5.9e-56 221.9 258 56.6
TPR.G17397 Trifolium pratense HOM05D005135 ORTHO05D005810 3.8e-55 219.2 224 59.4
Actinidia14214 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.4e-54 217.2 183 68.9
vmacro06737 Vaccinium macrocarpon HOM05D005135 ORTHO05D005810 5.5e-54 215.3 380 41.6
FAN03G1115 Fragaria x ananassa HOM05D005135 ORTHO05D005810 7.2e-54 214.9 309 46.3
DCAR_020208 Daucus carota HOM05D005135 ORTHO05D005810 6.1e-53 211.8 219 61.6
AUR62016060 Chenopodium quinoa HOM05D005135 ORTHO05D005810 2.0e-51 206.8 278 50.0
PGSC0003DMG400024247 Solanum tuberosum HOM05D005135 ORTHO05D005810 3.3e-51 206.1 175 69.7
Peaxi162Scf00192g00520 Petunia axillaris HOM05D005135 ORTHO05D005810 2.4e-49 199.9 206 63.1
Glyma.16G200500 Glycine max HOM05D005135 ORTHO05D005810 4.7e-45 185.7 251 48.6
Lalb_Chr21g0304891 Lupinus albus HOM05D005135 ORTHO05D005810 8.8e-44 181.4 219 52.5
AagrBONN_evm.TU.Sc2ySwM_117.1266 Anthoceros agrestis HOM05D005135 ORTHO05D005810 1.5e-43 180.6 276 43.8
Mapoly0096s0072 Marchantia polymorpha HOM05D005135 ORTHO05D005810 2.4e-41 173.3 250 44.4
Phvul.004G123300 Phaseolus vulgaris HOM05D005135 ORTHO05D005810 7.2e-38 161.8 256 46.5
Pp3c13_17710 Physcomitrium patens HOM05D005135 ORTHO05D005810 6.1e-37 158.7 279 39.8
Actinidia03096 Actinidia chinensis HOM05D005135 ORTHO05D005810 1.5e-35 154.1 196 52.6
Lj8C32T8 Lonicera japonica HOM05D005135 ORTHO05D005810 1.7e-34 150.6 99 77.8
Potri.012G132832 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.2e-32 144.4 182 53.3
AL8G30000 Arabidopsis lyrata HOM05D005135 ORTHO05D005810 1.0e-31 141.4 96 76.0
Haze_13791 Corylus avellana HOM05D005135 ORTHO05D005810 1.3e-31 141.0 269 43.1
CDE04G3520 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 5.5e-30 135.6 162 53.7
SHI13830 Sapria himalayana HOM05D005135 ORTHO05D005810 1.4e-28 131.0 171 49.7
Lj8A32T30 Lonicera japonica HOM05D005135 ORTHO05D005810 6.8e-28 128.6 181 50.8
Cre16.g661800 Chlamydomonas reinhardtii HOM05D005135 ORTHO05D005810 5.2e-20 102.4 123 44.7
Hund01499 Selenicereus undatus HOM05D000873 ORTHO05D005810 1.2e-19 101.3 104 57.7
Os10g0188400 Oryza sativa ssp. japonica HOM05D005135 ORTHO05D005810 9.2e-17 91.7 65 75.4
SHI48584 Sapria himalayana HOM05D005135 ORTHO05D005810 9.2e-17 91.7 151 43.7
Potri.012G132766 Populus trichocarpa HOM05D005135 ORTHO05D005810 1.2e-16 91.3 66 65.2
BcaC04g20628 Brassica carinata HOM05D005135 ORTHO05D005810 2.7e-16 90.1 227 38.8
Hma1.2p1_3202F.1_g333920 Hydrangea macrophylla HOM05D005135 ORTHO05D005810 2.5e-14 83.6 54 83.3
TAR291G0007 Trochodendron aralioides HOM05D005135 ORTHO05D005810 3.6e-13 79.7 142 42.3
Duzib205G1338 Durio zibethinus HOM05D005135 ORTHO05D005810 4.7e-13 79.3 132 42.4
Duzib205G1376 Durio zibethinus HOM05D005135 ORTHO05D005810 3.4e-11 73.2 109 43.1
SMO201G0013 Selaginella moellendorffii HOM05D005135 ORTHO05D005810 9.8e-11 71.6 63 61.9
SEGI_16349 Sequoiadendron giganteum HOM05D056048 ORTHO05D005810 3.7e-10 69.7 169 34.3
Cpa.g.sc4.198 Carica papaya HOM05D005135 ORTHO05D005810 5.4e-09 65.9 83 45.8
CDE04G1613 Ceratophyllum demersum HOM05D005135 ORTHO05D005810 2.7e-08 63.5 36 75.0
PRCOL_00003096 Prasinoderma coloniale HOM05D005135 ORTHO05D005810 4.3e-06 56.2 121 38.8


User provided reference genes

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