Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g072290.3 Solanum lycopersicum HOM05D006795 ORTHO05D008573 2.4e-138 495.4 227 100.0
CAN.G1187.5 Capsicum annuum HOM05D006795 ORTHO05D008573 5.0e-120 434.5 227 86.8
Nitab4.5_0001589g0020 Nicotiana tabacum HOM05D006795 ORTHO05D008573 2.4e-114 415.6 227 82.8
Nitab4.5_0000205g0150 Nicotiana tabacum HOM05D006795 ORTHO05D008573 1.5e-111 406.4 228 81.6
Sopen11g029960 Solanum pennellii HOM05D006795 ORTHO05D008573 9.5e-111 403.7 189 97.4
Peaxi162Scf00132g00138 Petunia axillaris HOM05D006795 ORTHO05D008573 3.6e-110 401.7 240 75.4
Dinv07998 Davidia involucrata HOM05D006795 ORTHO05D008573 8.4e-99 364.0 225 71.6
COL.COLO4_14197 Corchorus olitorius HOM05D006795 ORTHO05D008573 1.0e-96 357.1 225 71.6
Lj8A35T83 Lonicera japonica HOM05D006795 ORTHO05D008573 1.9e-95 352.8 227 70.5
CSS0024840 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 4.3e-95 351.7 225 69.8
Thecc.03G163300 Theobroma cacao HOM05D006795 ORTHO05D008573 1.2e-92 343.6 229 70.3
Haze_13816 Corylus avellana HOM05D006795 ORTHO05D008573 1.5e-92 343.2 224 69.2
CANSAT21G1655 Cannabis sativa HOM05D006795 ORTHO05D008573 3.4e-92 342.0 220 70.5
vmacro06760 Vaccinium macrocarpon HOM05D006795 ORTHO05D008573 4.4e-92 341.7 225 68.9
Actinidia31794 Actinidia chinensis HOM05D006795 ORTHO05D008573 7.6e-92 340.9 225 68.4
Ciclev10005807m.g Citrus clementina HOM05D006795 ORTHO05D008573 2.2e-91 339.3 225 68.9
ECA238G4708 Erigeron canadensis HOM05D006795 ORTHO05D008573 2.2e-91 339.3 227 67.8
TWI39G0269 Tripterygium wilfordii HOM05D006795 ORTHO05D008573 2.9e-91 339.0 225 68.9
Duzib068G1417 Durio zibethinus HOM05D006795 ORTHO05D008573 3.8e-91 338.6 225 69.3
Cpa.g.sc3.258 Carica papaya HOM05D006795 ORTHO05D008573 6.4e-91 337.8 225 68.0
PGR042G2278 Punica granatum HOM05D006795 ORTHO05D008573 2.4e-90 335.9 227 66.1
ClCG11G008970 Citrullus lanatus HOM05D006795 ORTHO05D008573 3.2e-90 335.5 223 69.1
QL12p039358 Quercus lobata HOM05D006795 ORTHO05D008573 3.2e-90 335.5 225 68.0
Lj5g0021204 Lotus japonicus HOM05D006795 ORTHO05D008573 5.4e-90 334.7 228 68.0
FAN06G0634 Fragaria x ananassa HOM05D001585 ORTHO05D001677 2.7e-89 332.4 222 66.7
FAN06G3003 Fragaria x ananassa HOM05D001585 ORTHO05D001677 2.7e-89 332.4 222 66.7
Cc02_g03780 Coffea canephora HOM05D006795 ORTHO05D008573 3.5e-89 332.0 223 67.3
Nn1g01176 Nelumbo nucifera HOM05D006795 ORTHO05D008573 3.5e-89 332.0 228 67.5
Sabra15G0145100 Salix brachista HOM05D006795 ORTHO05D008573 3.5e-89 332.0 227 67.4
Potri.015G132300 Populus trichocarpa HOM05D006795 ORTHO05D008573 1.0e-88 330.5 225 66.7
Manes.06G149000 Manihot esculenta HOM05D006795 ORTHO05D008573 1.7e-88 329.7 225 65.8
AUR62016086 Chenopodium quinoa HOM05D006795 ORTHO05D008573 2.3e-88 329.3 226 65.9
Aa31LG3G8130 Aethionema arabicum HOM05D006795 ORTHO05D008573 3.0e-88 328.9 221 65.2
Aqoxy7G00570 Aquilegia oxysepala HOM05D006795 ORTHO05D008573 5.1e-88 328.2 226 66.8
CiPaw.03G097900 Carya illinoinensis HOM05D006795 ORTHO05D008573 5.1e-88 328.2 225 67.6
FvH4_7g28300 Fragaria vesca HOM05D006795 ORTHO05D008573 5.1e-88 328.2 222 66.2
Prupe.2G283700 Prunus persica HOM05D006795 ORTHO05D008573 6.6e-88 327.8 223 69.1
RcHm_v2.0_Chr1g0375271 Rosa chinensis HOM05D006795 ORTHO05D008573 6.6e-88 327.8 225 66.7
MD01G1187300 Malus domestica HOM05D006795 ORTHO05D008573 8.7e-88 327.4 224 66.5
Sc13g0008130 Simmondsia chinensis HOM05D006795 ORTHO05D008573 8.7e-88 327.4 225 67.1
BolC2t08156H Brassica oleracea HOM05D006795 ORTHO05D008573 1.5e-87 326.6 222 66.7
BcaB08g35519 Brassica carinata HOM05D006795 ORTHO05D008573 1.9e-87 326.2 221 66.1
BraA02t06278Z Brassica rapa HOM05D006795 ORTHO05D008573 1.9e-87 326.2 226 65.0
MD07G1259600 Malus domestica HOM05D006795 ORTHO05D008573 2.5e-87 325.9 219 66.7
BcaC03g14579 Brassica carinata HOM05D006795 ORTHO05D008573 3.3e-87 325.5 222 66.7
C02p20240 Brassica napus HOM05D006795 ORTHO05D008573 3.3e-87 325.5 222 66.2
Lsat_1_v5_gn_2_129741 Lactuca sativa HOM05D006795 ORTHO05D008573 3.3e-87 325.5 228 67.1
TAR636G0045 Trochodendron aralioides HOM05D006795 ORTHO05D008573 4.3e-87 325.1 266 57.5
Hund04657 Selenicereus undatus HOM05D006795 ORTHO05D008573 5.6e-87 324.7 232 64.2
A02p12140 Brassica napus HOM05D006795 ORTHO05D008573 9.6e-87 323.9 222 66.2
Thhalv10014608m.g Eutrema salsugineum HOM05D006795 ORTHO05D008573 9.6e-87 323.9 221 65.6
Migut.F00416 Erythranthe guttata HOM05D006795 ORTHO05D008573 1.3e-86 323.6 224 64.3
FAN10G2418 Fragaria x ananassa HOM05D006795 ORTHO05D008573 2.8e-86 322.4 222 63.5
arahy.Tifrunner.gnm1.ann1.939HGU Arachis hypogaea HOM05D006795 ORTHO05D008573 3.6e-86 322.0 225 65.3
arahy.Tifrunner.gnm1.ann1.ATT3CU Arachis hypogaea HOM05D006795 ORTHO05D008573 4.8e-86 321.6 230 65.7
CsaV3_2G010830 Cucumis sativus L. HOM05D006795 ORTHO05D008573 6.2e-86 321.2 223 66.4
Medtr1g102470 Medicago truncatula HOM05D006795 ORTHO05D008573 1.4e-85 320.1 225 65.8
THA.LOC104825075 Tarenaya hassleriana HOM05D006795 ORTHO05D008573 1.4e-85 320.1 224 65.6
Gohir.A09G178600 Gossypium hirsutum HOM05D006795 ORTHO05D008573 3.1e-85 318.9 225 65.8
Gohir.D09G174200 Gossypium hirsutum HOM05D006795 ORTHO05D008573 3.1e-85 318.9 225 65.8
Glyma.10G242200 Glycine max HOM05D006795 ORTHO05D008573 9.0e-85 317.4 228 64.9
TPR.G26107 Trifolium pratense HOM05D006795 ORTHO05D008573 1.5e-84 316.6 230 64.8
Eucgr.A02872 Eucalyptus grandis HOM05D006795 ORTHO05D008573 2.6e-84 315.8 228 64.0
Glyma.20G151900 Glycine max HOM05D006795 ORTHO05D008573 3.4e-84 315.5 228 64.9
A10p09570 Brassica napus HOM05D006795 ORTHO05D008573 3.8e-83 312.0 221 63.3
BraA10t43032Z Brassica rapa HOM05D006795 ORTHO05D008573 3.8e-83 312.0 221 63.3
EL10Ac3g05773 Beta vulgaris HOM05D006795 ORTHO05D008573 4.9e-83 311.6 225 64.4
AUR62035033 Chenopodium quinoa HOM05D006795 ORTHO05D008573 4.9e-83 311.6 243 60.9
Atru.chr1.614 Acer truncatum HOM05D006795 ORTHO05D008573 1.1e-82 310.5 229 63.3
PSO782G4689 Papaver somniferum HOM05D006795 ORTHO05D008573 1.9e-82 309.7 227 63.9
PSO478G2429 Papaver somniferum HOM05D006795 ORTHO05D008573 2.4e-82 309.3 227 63.4
Rhsim03G0172800 Rhododendron simsii HOM05D006795 ORTHO05D008573 3.5e-81 305.4 296 52.0
unitig_0.g1164 Utricularia gibba HOM05D006795 ORTHO05D008573 1.3e-80 303.5 221 61.5
Lalb_Chr02g0140771 Lupinus albus HOM05D006795 ORTHO05D008573 1.9e-79 299.7 225 61.8
Sed0014900 Sechium edule HOM05D006795 ORTHO05D008573 7.4e-79 297.7 265 54.3
GSVIVG01018489001 Vitis vinifera HOM05D006795 ORTHO05D008573 1.6e-78 296.6 195 67.7
FAN01G1007 Fragaria x ananassa HOM05D006795 ORTHO05D008573 3.7e-78 295.4 235 57.9
Oeu042417.2 Olea europaea HOM05D006795 ORTHO05D008573 3.7e-78 295.4 227 61.7
HPP92_005470 Vanilla planifolia HOM05D006795 ORTHO05D008573 1.8e-77 293.1 224 60.7
Oeu021736.1 Olea europaea HOM05D006795 ORTHO05D008573 5.3e-77 291.6 189 67.7
ATR1145G092 Amborella trichopoda HOM05D006795 ORTHO05D008573 1.7e-75 286.6 232 57.3
Manes.06G139000 Manihot esculenta HOM05D006795 ORTHO05D008573 3.8e-75 285.4 195 66.2
Mapoly0020s0061 Marchantia polymorpha HOM05D006795 ORTHO05D008573 1.4e-74 283.5 220 60.0
SEGI_28069 Sequoiadendron giganteum HOM05D006795 ORTHO05D008573 2.5e-74 282.7 223 58.7
Actinidia03085 Actinidia chinensis HOM05D006795 ORTHO05D008573 2.1e-73 279.6 189 66.7
FAN03G1859 Fragaria x ananassa HOM05D001585 ORTHO05D001677 2.7e-73 279.3 193 64.8
PGSC0003DMG400027380 Solanum tuberosum HOM05D006795 ORTHO05D008573 4.6e-73 278.5 134 92.5
SGA_v2.0_scaffold2G01112 Striga asiatica HOM05D006795 ORTHO05D008573 4.6e-73 278.5 204 64.7
FAN03G1183 Fragaria x ananassa HOM05D001585 ORTHO05D001677 7.9e-73 277.7 193 64.2
BcaB05g23990 Brassica carinata HOM05D006795 ORTHO05D008573 6.7e-72 274.6 194 63.4
Ah.13g067570 Amaranthus hybridus HOM05D006795 ORTHO05D008573 1.1e-71 273.9 191 65.4
MSTRG.119 Avicennia marina HOM05D006795 ORTHO05D008573 1.1e-71 273.9 192 64.1
Os02g0535400 Oryza sativa ssp. japonica HOM05D006795 ORTHO05D008573 5.7e-71 271.6 190 63.2
CDE06G1038 Ceratophyllum demersum HOM05D006795 ORTHO05D008573 2.1e-70 269.6 192 64.1
CARHR264540 Cardamine hirsuta HOM05D006795 ORTHO05D008573 3.7e-70 268.9 190 64.2
Gorai.006G196200 Gossypium raimondii HOM05D006795 ORTHO05D008573 6.2e-70 268.1 207 60.9
SalBow4G0392 Salvia bowleyana HOM05D006795 ORTHO05D008573 5.3e-69 265.0 227 55.1
SalBow4G1076 Salvia bowleyana HOM05D006795 ORTHO05D008573 5.3e-69 265.0 227 55.1
AT5G51700 Arabidopsis thaliana HOM05D006795 ORTHO05D008573 4.5e-68 261.9 186 63.4
CSS0028605 Camellia sinensis var. sinensis HOM05D006795 ORTHO05D008573 4.5e-68 261.9 225 56.4
Zm00001eb242890 Zea mays HOM05D006795 ORTHO05D008573 7.6e-68 261.2 192 59.4
Carub.0008s1172 Capsella rubella HOM05D006795 ORTHO05D008573 1.0e-67 260.8 186 61.8
Sp6g13920 Schrenkiella parvula HOM05D006795 ORTHO05D008573 1.0e-67 260.8 187 62.0
AL8G25950 Arabidopsis lyrata HOM05D006795 ORTHO05D008573 2.2e-67 259.6 186 63.4
Psat6g202120 Pisum sativum HOM05D006795 ORTHO05D008573 2.2e-67 259.6 193 64.8
Psat6g202920 Pisum sativum HOM05D006795 ORTHO05D008573 2.2e-67 259.6 193 64.8
TAR629G1442 Trochodendron aralioides HOM05D006795 ORTHO05D008573 1.3e-64 250.4 201 61.7
SMO146G0237 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 5.7e-63 245.0 223 53.4
Pp3c14_10540 Physcomitrium patens HOM05D006795 ORTHO05D008573 4.8e-62 241.9 196 57.7
Ca_10834_v3 Cicer arietinum L. HOM05D006795 ORTHO05D008573 5.9e-60 235.0 224 54.5
CBR_g32001 Chara braunii HOM05D006795 ORTHO05D008573 4.2e-58 228.8 208 52.4
MCO02G265 Micromonas commoda HOM05D006795 ORTHO05D008573 5.9e-52 208.4 220 45.0
VMungo0720G2517 Vigna mungo HOM05D006795 ORTHO05D008573 3.2e-50 202.6 165 59.4
Phvul.007G063300 Phaseolus vulgaris HOM05D006795 ORTHO05D008573 2.7e-49 199.5 145 62.1
Zm00001eb181460 Zea mays HOM05D006795 ORTHO05D008573 1.7e-35 153.7 92 68.5
MELO3C008527.2 Cucumis melo HOM05D006795 ORTHO05D008573 2.5e-34 149.8 75 74.7
SMO146G0045 Selaginella moellendorffii HOM05D006795 ORTHO05D008573 1.9e-18 97.1 195 32.3
PRCOL_00002330 Prasinoderma coloniale HOM05D006795 ORTHO05D008573 2.2e-06 57.0 61 36.1
CARHR264550 Cardamine hirsuta HOM05D006795 ORTHO05D008573 3.7e-06 56.2 32 68.8


User provided reference genes

Program Settings