Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g071790.2 Solanum lycopersicum HOM05D005008 ORTHO05D006092 1.6e-82 309.3 150 100.0
Sopen11g029460 Solanum pennellii HOM05D005008 ORTHO05D006092 5.2e-81 304.3 148 99.3
PGSC0003DMG400002990 Solanum tuberosum HOM05D005008 ORTHO05D006092 2.6e-80 302.0 150 98.0
PGSC0003DMG400005906 Solanum tuberosum HOM05D005008 ORTHO05D006092 1.1e-73 280.0 148 88.5
Solyc06g073900.3 Solanum lycopersicum HOM05D005008 ORTHO05D006092 1.5e-72 276.2 148 87.2
Sopen06g030300 Solanum pennellii HOM05D005008 ORTHO05D006092 1.5e-72 276.2 148 87.2
Nitab4.5_0002426g0070 Nicotiana tabacum HOM05D005008 ORTHO05D006092 5.8e-72 274.2 150 88.7
CAN.G1463.18 Capsicum annuum HOM05D005008 ORTHO05D006092 2.9e-71 271.9 149 86.6
Peaxi162Scf00717g00217 Petunia axillaris HOM05D005008 ORTHO05D006092 2.9e-71 271.9 150 88.0
Nitab4.5_0005569g0020 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.1e-70 270.0 150 87.3
Nitab4.5_0003644g0030 Nicotiana tabacum HOM05D005008 ORTHO05D006092 1.9e-70 269.2 148 85.1
Nitab4.5_0015902g0010 Nicotiana tabacum HOM05D005008 ORTHO05D006092 5.4e-70 267.7 144 86.1
Peaxi162Scf00098g00148 Petunia axillaris HOM05D005008 ORTHO05D006092 2.7e-69 265.4 148 84.5
Dinv18863 Davidia involucrata HOM05D005008 ORTHO05D006092 1.8e-65 252.7 149 77.9
Dinv21730 Davidia involucrata HOM05D005008 ORTHO05D006092 2.3e-65 252.3 146 80.1
Manes.11G103800 Manihot esculenta HOM05D005008 ORTHO05D006092 5.2e-65 251.1 143 80.4
CiPaw.13G126400 Carya illinoinensis HOM05D005008 ORTHO05D006092 4.9e-63 244.6 146 76.7
Rhsim13G0198500 Rhododendron simsii HOM05D005008 ORTHO05D006092 5.4e-62 241.1 143 76.2
PGR083G2197 Punica granatum HOM05D005008 ORTHO05D006092 9.2e-62 240.4 148 73.6
Cc01_g07910 Coffea canephora HOM05D005008 ORTHO05D006092 4.6e-61 238.0 145 73.1
RcHm_v2.0_Chr7g0230441 Rosa chinensis HOM05D005008 ORTHO05D006092 7.8e-61 237.3 149 72.5
Hma1.2p1_0101F.1_g049710 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 2.3e-60 235.7 150 73.3
CsaV3_1G043620 Cucumis sativus L. HOM05D005008 ORTHO05D006092 3.9e-60 235.0 147 73.5
THA.LOC104808952 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 6.6e-60 234.2 137 76.6
Ciclev10029485m.g Citrus clementina HOM05D005008 ORTHO05D006092 1.1e-59 233.4 145 73.8
MELO3C015091.2 Cucumis melo HOM05D005008 ORTHO05D006092 1.1e-59 233.4 147 72.8
Eucgr.J00592 Eucalyptus grandis HOM05D005008 ORTHO05D006092 1.9e-59 232.6 137 74.5
ClCG03G012390 Citrullus lanatus HOM05D005008 ORTHO05D006092 2.5e-59 232.3 143 74.8
CSS0002518 Camellia sinensis var. sinensis HOM05D005008 ORTHO05D006092 2.8e-58 228.8 143 72.0
Prupe.6G148300 Prunus persica HOM05D005008 ORTHO05D006092 3.6e-58 228.4 147 69.4
RcHm_v2.0_Chr5g0049161 Rosa chinensis HOM05D005008 ORTHO05D006092 3.6e-58 228.4 140 72.1
Atru.chr3.3067 Acer truncatum HOM05D005008 ORTHO05D006092 4.7e-58 228.0 147 70.1
Cfa010212 Carpinus fangiana HOM05D005008 ORTHO05D006092 8.1e-58 227.3 151 72.8
MD03G1160100 Malus domestica HOM05D005008 ORTHO05D006092 1.4e-57 226.5 144 70.8
MD11G1175100 Malus domestica HOM05D005008 ORTHO05D006092 5.2e-57 224.6 145 71.0
Sabra09G0000700 Salix brachista HOM05D005008 ORTHO05D006092 5.2e-57 224.6 136 70.6
Sc21g0006720 Simmondsia chinensis HOM05D005008 ORTHO05D006092 1.2e-56 223.4 149 63.8
Thecc.09G268300 Theobroma cacao HOM05D005008 ORTHO05D006092 2.0e-56 222.6 146 67.8
Duzib170G0524 Durio zibethinus HOM05D005008 ORTHO05D006092 3.4e-56 221.9 146 69.9
Psat7g129160 Pisum sativum HOM05D005008 ORTHO05D006092 4.4e-56 221.5 143 70.6
Potri.009G001100 Populus trichocarpa HOM05D005008 ORTHO05D006092 4.4e-56 221.5 136 69.9
THA.LOC104815294 Tarenaya hassleriana HOM05D005008 ORTHO05D006092 4.4e-56 221.5 144 69.4
Hund18808 Selenicereus undatus HOM05D005008 ORTHO05D006092 1.7e-55 219.5 140 68.6
Duzib168G2291 Durio zibethinus HOM05D005008 ORTHO05D006092 2.9e-55 218.8 146 67.8
Sp1g07130 Schrenkiella parvula HOM05D005008 ORTHO05D006092 4.9e-55 218.0 143 70.6
Gohir.D08G017500 Gossypium hirsutum HOM05D005008 ORTHO05D006092 2.4e-54 215.7 144 67.4
Gorai.004G011900 Gossypium raimondii HOM05D005008 ORTHO05D006092 2.4e-54 215.7 144 67.4
vmacro04058 Vaccinium macrocarpon HOM05D005008 ORTHO05D006092 2.4e-54 215.7 140 72.9
GSVIVG01028464001 Vitis vinifera HOM05D005008 ORTHO05D006092 3.2e-54 215.3 143 66.4
Sed0018780 Sechium edule HOM05D005008 ORTHO05D006092 5.4e-54 214.5 142 67.6
TPR.G38259 Trifolium pratense HOM05D005008 ORTHO05D006092 5.4e-54 214.5 131 73.3
Carub.0001s0784 Capsella rubella HOM05D005008 ORTHO05D006092 7.1e-54 214.2 143 67.8
Ca_18750_v3 Cicer arietinum L. HOM05D005008 ORTHO05D006092 7.1e-54 214.2 143 69.2
Thhalv10019305m.g Eutrema salsugineum HOM05D005008 ORTHO05D006092 7.1e-54 214.2 130 74.6
Sc12g0000410 Simmondsia chinensis HOM05D005008 ORTHO05D006092 7.1e-54 214.2 147 66.0
VMungo0251G1441 Vigna mungo HOM05D005008 ORTHO05D006092 9.2e-54 213.8 144 67.4
AT1G08480 Arabidopsis thaliana HOM05D005008 ORTHO05D006092 1.2e-53 213.4 137 70.8
Gohir.A08G007400 Gossypium hirsutum HOM05D005008 ORTHO05D006092 1.2e-53 213.4 144 66.7
CARHR008370 Cardamine hirsuta HOM05D005008 ORTHO05D006092 2.1e-53 212.6 137 70.8
Aa31LG2G20300 Aethionema arabicum HOM05D005008 ORTHO05D006092 2.7e-53 212.2 133 74.4
MSTRG.18800 Avicennia marina HOM05D005008 ORTHO05D006092 7.8e-53 210.7 141 70.9
TAR628G1298 Trochodendron aralioides HOM05D005008 ORTHO05D006092 1.7e-52 209.5 147 65.3
FAN08G1342 Fragaria x ananassa HOM05D005008 ORTHO05D006092 2.3e-52 209.1 133 72.2
FAN18G0191 Fragaria x ananassa HOM05D005008 ORTHO05D006092 3.9e-52 208.4 133 72.2
AUR62001577 Chenopodium quinoa HOM05D005008 ORTHO05D006092 5.1e-52 208.0 138 68.1
Lalb_Chr16g0385131 Lupinus albus HOM05D005008 ORTHO05D006092 5.1e-52 208.0 131 70.2
Oeu031444.1 Olea europaea HOM05D005008 ORTHO05D006092 5.1e-52 208.0 141 69.5
Medtr4g084320 Medicago truncatula HOM05D005008 ORTHO05D006092 6.6e-52 207.6 143 67.1
TPR.G27448 Trifolium pratense HOM05D005008 ORTHO05D006092 6.6e-52 207.6 148 65.5
Aqoxy7G02777 Aquilegia oxysepala HOM05D005008 ORTHO05D006092 8.6e-52 207.2 133 69.9
BcaB03g13330 Brassica carinata HOM05D005008 ORTHO05D006092 8.6e-52 207.2 134 71.6
Phvul.002G096700 Phaseolus vulgaris HOM05D005008 ORTHO05D006092 8.6e-52 207.2 140 65.7
FAN13G1722 Fragaria x ananassa HOM05D005008 ORTHO05D006092 1.1e-51 206.8 133 71.4
Glyma.20G018300 Glycine max HOM05D005008 ORTHO05D006092 1.1e-51 206.8 130 69.2
unitig_899.g15386 Utricularia gibba HOM05D005008 ORTHO05D006092 1.1e-51 206.8 133 75.2
A06p05480 Brassica napus HOM05D005008 ORTHO05D006092 2.5e-51 205.7 130 72.3
BraA06t23756Z Brassica rapa HOM05D005008 ORTHO05D006092 2.5e-51 205.7 130 72.3
A08p35120 Brassica napus HOM05D005008 ORTHO05D006092 4.3e-51 204.9 134 70.9
Lsat_1_v5_gn_6_104840 Lactuca sativa HOM05D005008 ORTHO05D006092 4.3e-51 204.9 144 66.7
unitig_746.g26601 Utricularia gibba HOM05D005008 ORTHO05D006092 4.3e-51 204.9 143 70.6
MSTRG.21002 Avicennia marina HOM05D005008 ORTHO05D006092 5.6e-51 204.5 137 70.8
FAN04G2231 Fragaria x ananassa HOM05D005008 ORTHO05D006092 5.6e-51 204.5 129 72.1
Aa31LG5G14080 Aethionema arabicum HOM05D005008 ORTHO05D006092 7.3e-51 204.1 130 70.8
BcaB07g34092 Brassica carinata HOM05D005008 ORTHO05D006092 7.3e-51 204.1 128 74.2
C05p06590 Brassica napus HOM05D005008 ORTHO05D006092 7.3e-51 204.1 128 74.2
BolC5t29419H Brassica oleracea HOM05D005008 ORTHO05D006092 7.3e-51 204.1 128 74.2
ATR1136G073 Amborella trichopoda HOM05D005008 ORTHO05D006092 1.2e-50 203.4 137 66.4
EL10Ac7g16268 Beta vulgaris HOM05D005008 ORTHO05D006092 1.2e-50 203.4 138 65.2
BraA08t35421Z Brassica rapa HOM05D005008 ORTHO05D006092 1.2e-50 203.4 134 70.1
Lj2E351T1 Lonicera japonica HOM05D005008 ORTHO05D006092 1.6e-50 203.0 121 74.4
AL1G18910 Arabidopsis lyrata HOM05D005008 ORTHO05D006092 2.8e-50 202.2 154 61.7
Lalb_Chr05g0219631 Lupinus albus HOM05D005008 ORTHO05D006092 2.8e-50 202.2 141 66.0
BcaC07g38394 Brassica carinata HOM05D005008 ORTHO05D006092 1.4e-49 199.9 138 68.1
C08p11520 Brassica napus HOM05D005008 ORTHO05D006092 1.4e-49 199.9 138 68.1
BolC8t48832H Brassica oleracea HOM05D005008 ORTHO05D006092 1.4e-49 199.9 138 68.1
Migut.D02371 Erythranthe guttata HOM05D005008 ORTHO05D006092 1.8e-49 199.5 135 68.9
Migut.D02374 Erythranthe guttata HOM05D005008 ORTHO05D006092 1.8e-49 199.5 135 68.9
Lj2g0024950 Lotus japonicus HOM05D005008 ORTHO05D006092 2.4e-49 199.1 146 63.0
ECA246G4934 Erigeron canadensis HOM05D005008 ORTHO05D006092 1.5e-48 196.4 121 73.6
arahy.Tifrunner.gnm1.ann1.LRUS99 Arachis hypogaea HOM05D005008 ORTHO05D006092 2.6e-48 195.7 131 65.6
HanXRQChr05g0163331 Helianthus annuus HOM05D005008 ORTHO05D006092 3.4e-48 195.3 146 62.3
QL02p021765 Quercus lobata HOM05D005008 ORTHO05D006092 3.4e-48 195.3 212 49.5
TWI31G0222 Tripterygium wilfordii HOM05D005008 ORTHO05D006092 5.8e-48 194.5 131 69.5
arahy.Tifrunner.gnm1.ann1.0IE2SQ Arachis hypogaea HOM05D005008 ORTHO05D006092 4.9e-47 191.4 131 64.9
CDE05G0523 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 1.6e-45 186.4 139 58.3
CDE04G3167 Ceratophyllum demersum HOM05D005008 ORTHO05D006092 2.7e-45 185.7 139 58.3
SEGI_09212 Sequoiadendron giganteum HOM05D005008 ORTHO05D006092 2.7e-45 185.7 150 58.0
SGA_v2.0_scaffold114G31950 Striga asiatica HOM05D005008 ORTHO05D006092 4.6e-45 184.9 141 61.7
COL.COLO4_25364 Corchorus olitorius HOM05D005008 ORTHO05D006092 2.3e-44 182.6 139 64.0
MBI17_g21974_MAGBIO Magnolia biondii HOM05D005008 ORTHO05D006092 1.1e-43 180.3 126 61.1
arahy.Tifrunner.gnm1.ann1.L1LZAQ Arachis hypogaea HOM05D005008 ORTHO05D006092 5.6e-43 177.9 121 65.3
Ah.01g003330 Amaranthus hybridus HOM05D005008 ORTHO05D006092 4.0e-41 171.8 217 43.3
MBI17_g21976_MAGBIO Magnolia biondii HOM05D000527 ORTHO05D000559 6.9e-41 171.0 122 61.5
arahy.Tifrunner.gnm1.ann1.67HGNM Arachis hypogaea HOM05D005008 ORTHO05D006092 9.9e-40 167.2 112 67.0
DCAR_021985 Daucus carota HOM05D005008 ORTHO05D006092 2.2e-39 166.0 126 63.5
PSO325G0018 Papaver somniferum HOM05D005008 ORTHO05D006092 6.7e-36 154.5 135 56.3
PSO144G0132 Papaver somniferum HOM05D005008 ORTHO05D006092 1.8e-33 146.4 129 55.0
Zm00001eb260600 Zea mays HOM05D005008 ORTHO05D006092 2.6e-32 142.5 134 48.5
Zm00001eb173990 Zea mays HOM05D005008 ORTHO05D006092 3.4e-32 142.1 135 48.1
Os08g0112800 Oryza sativa ssp. japonica HOM05D005008 ORTHO05D006092 1.3e-31 140.2 134 47.0
Atru.chr5.2770 Acer truncatum HOM05D005008 ORTHO05D006092 8.4e-31 137.5 147 51.0
HPP92_002034 Vanilla planifolia HOM05D005008 ORTHO05D006092 1.2e-29 133.7 134 45.5
Nn1g08680 Nelumbo nucifera HOM05D005008 ORTHO05D006092 4.6e-29 131.7 80 75.0
FvH4_5g32770 Fragaria vesca HOM05D005008 ORTHO05D006092 6.0e-29 131.3 86 70.9
Haze_23598 Corylus avellana HOM05D005008 ORTHO05D006092 1.3e-28 130.2 96 64.6
PSO478G0762 Papaver somniferum HOM05D005008 ORTHO05D006092 1.3e-28 130.2 122 50.0
Sed0017043 Sechium edule HOM05D005008 ORTHO05D006092 6.7e-28 127.9 97 60.8
PSO017G3706 Papaver somniferum HOM05D005008 ORTHO05D006092 8.7e-28 127.5 122 49.2
AUR62020205 Chenopodium quinoa HOM05D005008 ORTHO05D006092 3.3e-27 125.6 84 69.0
PSO017G4122 Papaver somniferum HOM05D005008 ORTHO05D006092 3.3e-27 125.6 122 48.4
PSO339G0217 Papaver somniferum HOM05D005008 ORTHO05D006092 6.9e-25 117.9 114 48.2
Mapoly0024s0049 Marchantia polymorpha HOM05D005008 ORTHO05D006092 1.7e-23 113.2 132 43.2
Pp3c7_24330 Physcomitrium patens HOM05D005008 ORTHO05D006092 4.9e-23 111.7 136 39.7
SalBow6G2115 Salvia bowleyana HOM05D005008 ORTHO05D006092 1.9e-22 109.8 163 38.0
PSO541G3575 Papaver somniferum HOM05D005008 ORTHO05D006092 2.5e-22 109.4 95 50.5
Pp3c1_6020 Physcomitrium patens HOM05D005008 ORTHO05D006092 1.6e-21 106.7 130 41.5
BcaB07g32561 Brassica carinata HOM05D005008 ORTHO05D006092 1.6e-18 96.7 89 56.2
TPR.G18466 Trifolium pratense HOM05D005008 ORTHO05D006092 6.3e-18 94.7 74 62.2
CBR_g29511 Chara braunii HOM05D005008 ORTHO05D006092 1.2e-16 90.5 147 30.6
Hma1.2p1_1951F.1_g308770 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.2e-16 90.5 60 65.0
Hma1.2p1_1258F.1_g270900 Hydrangea macrophylla HOM05D005008 ORTHO05D006092 1.5e-16 90.1 60 65.0
CBR_g36250 Chara braunii HOM05D005008 ORTHO05D006092 2.9e-15 85.9 132 31.1
PSO447G0120 Papaver somniferum HOM05D005008 ORTHO05D006092 6.1e-13 78.2 72 50.0
SMO364G0346 Selaginella moellendorffii HOM05D005008 ORTHO05D006092 5.7e-11 71.6 106 34.9
FvH4_3g26740 Fragaria vesca HOM05D005008 ORTHO05D006092 8.5e-07 57.8 38 63.2
Oeu026671.1 Olea europaea HOM05D005008 ORTHO05D006092 1.4e-06 57.0 37 70.3


User provided reference genes

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