Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g071250.3 Solanum lycopersicum HOM05D004021 ORTHO05D003767 0.0e+00 2361.6 1184 100.0
Sopen11g028940 Solanum pennellii HOM05D004021 ORTHO05D003767 0.0e+00 2336.6 1184 99.0
PGSC0003DMG401018585 Solanum tuberosum HOM05D004021 ORTHO05D003767 0.0e+00 2102.0 1188 90.2
CAN.G309.87 Capsicum annuum HOM05D004021 ORTHO05D003767 0.0e+00 1572.0 1199 70.8
Nitab4.5_0000664g0250 Nicotiana tabacum HOM05D004021 ORTHO05D003767 0.0e+00 1413.3 1201 65.8
Peaxi162Scf00276g00210 Petunia axillaris HOM05D004021 ORTHO05D003767 0.0e+00 1406.3 1196 64.5
Nitab4.5_0000664g0210 Nicotiana tabacum HOM05D004021 ORTHO05D003767 0.0e+00 1394.4 1212 65.3
Nitab4.5_0001567g0150 Nicotiana tabacum HOM05D004021 ORTHO05D003767 0.0e+00 1379.8 1205 65.0
Nitab4.5_0001567g0120 Nicotiana tabacum HOM05D004021 ORTHO05D003767 0.0e+00 1364.4 1201 64.0
Peaxi162Scf00657g00058 Petunia axillaris HOM05D004021 ORTHO05D003767 3.2e-194 683.3 1292 39.8
Nitab4.5_0000500g0270 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.1e-149 535.4 1247 36.2
Nitab4.5_0002178g0010 Nicotiana tabacum HOM05D004021 ORTHO05D003767 9.9e-143 512.3 1211 35.8
Nitab4.5_0000406g0040 Nicotiana tabacum HOM05D004021 ORTHO05D003767 1.9e-117 428.3 1189 33.4
Dinv14242 Davidia involucrata HOM05D004021 ORTHO05D003767 1.7e-113 415.2 1304 29.2
Dinv30267 Davidia involucrata HOM05D004021 ORTHO05D003767 2.9e-110 404.4 1307 29.0
Lj8A589G31 Lonicera japonica HOM05D004021 ORTHO05D003767 1.9e-85 322.0 1263 27.2
Actinidia14666 Actinidia chinensis HOM05D004021 ORTHO05D003767 2.0e-74 285.4 1355 26.9
Oeu012193.1 Olea europaea HOM05D004021 ORTHO05D003767 1.7e-73 282.3 1209 27.0
CSS0009602 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 6.3e-73 280.4 1302 26.8
Oeu031555.1 Olea europaea HOM05D004021 ORTHO05D003767 3.6e-68 264.6 1207 28.2
Rhsim07G0152700 Rhododendron simsii HOM05D004021 ORTHO05D003767 3.1e-59 235.0 1285 25.7
Potri.018G039500 Populus trichocarpa HOM05D004021 ORTHO05D003767 8.9e-59 233.4 1347 26.3
QL12p029472 Quercus lobata HOM05D004021 ORTHO05D003767 3.5e-55 221.5 1319 25.8
Actinidia15734 Actinidia chinensis HOM05D004021 ORTHO05D003767 3.0e-54 218.4 1267 24.6
CiPaw.07G205800 Carya illinoinensis HOM05D004021 ORTHO05D003767 6.6e-54 217.2 1342 25.4
Thecc.09G042000 Theobroma cacao HOM05D004021 ORTHO05D003767 1.9e-53 215.7 1309 25.7
Manes.16G071666 Manihot esculenta HOM05D004021 ORTHO05D003767 1.6e-52 212.6 1334 24.4
Potri.006G240500 Populus trichocarpa HOM05D004021 ORTHO05D003767 4.7e-52 211.1 1329 26.6
MSTRG.14021 Avicennia marina HOM05D004021 ORTHO05D003767 6.8e-51 207.2 1202 24.6
Cfa013353 Carpinus fangiana HOM05D004021 ORTHO05D003767 6.8e-51 207.2 1331 24.9
Duzib150G1483 Durio zibethinus HOM05D004021 ORTHO05D003767 1.2e-50 206.5 1304 25.8
Sabra18G0039500 Salix brachista HOM05D004021 ORTHO05D003767 2.6e-50 205.3 1331 25.0
MSTRG.1655 Avicennia marina HOM05D004021 ORTHO05D003767 3.4e-50 204.9 1211 24.3
Duzib187G0651 Durio zibethinus HOM05D004021 ORTHO05D003767 2.4e-48 198.7 1309 25.5
Haze_21872 Corylus avellana HOM05D004021 ORTHO05D003767 2.1e-47 195.7 1376 23.9
Sabra06G0188100 Salix brachista HOM05D004021 ORTHO05D003767 7.8e-47 193.7 1369 25.0
Ciclev10007267m.g Citrus clementina HOM05D004021 ORTHO05D003767 6.6e-46 190.7 1300 24.3
RcHm_v2.0_Chr6g0305941 Rosa chinensis HOM05D004021 ORTHO05D003767 5.6e-45 187.6 1333 23.3
Prupe.1G450900 Prunus persica HOM05D004021 ORTHO05D003767 1.5e-42 179.5 1338 24.1
COL.COLO4_18677 Corchorus olitorius HOM05D004021 ORTHO05D003767 9.9e-42 176.8 1312 25.8
MD08G1116300 Malus domestica HOM05D004021 ORTHO05D003767 1.7e-41 176.0 1280 24.0
Cc08_g09190 Coffea canephora HOM05D004021 ORTHO05D003767 6.4e-41 174.1 472 33.3
CiPaw.08G024400 Carya illinoinensis HOM05D004021 ORTHO05D003767 1.1e-40 173.3 1345 25.0
vmacro05366 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 1.1e-40 173.3 1221 24.5
Gohir.A07G023100 Gossypium hirsutum HOM05D004021 ORTHO05D003767 1.4e-40 172.9 1289 24.4
FAN20G2231 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.9e-40 172.6 1350 23.1
GSVIVG01035651001 Vitis vinifera HOM05D004021 ORTHO05D003767 1.9e-40 172.6 898 27.2
CANSAT25G3821 Cannabis sativa HOM05D004021 ORTHO05D003767 5.4e-40 171.0 1386 23.2
DCAR_007709 Daucus carota HOM05D004021 ORTHO05D003767 1.2e-39 169.9 1216 23.3
Gorai.001G027600 Gossypium raimondii HOM05D004021 ORTHO05D003767 1.2e-39 169.9 1319 24.6
THA.LOC104799199 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.6e-39 169.5 1277 24.5
FAN27G1714 Fragaria x ananassa HOM05D004021 ORTHO05D003767 6.0e-39 167.5 1344 23.4
FvH4_2g35880 Fragaria vesca HOM05D004021 ORTHO05D003767 2.3e-38 165.6 1345 23.3
FAN15G2992 Fragaria x ananassa HOM05D004021 ORTHO05D003767 1.5e-37 162.9 1343 23.5
Duzib168G2343 Durio zibethinus HOM05D004021 ORTHO05D003767 2.5e-37 162.2 1258 24.3
Gohir.A07G023000 Gossypium hirsutum HOM05D004021 ORTHO05D003767 3.3e-37 161.8 1325 25.0
Gorai.001G027700 Gossypium raimondii HOM05D004021 ORTHO05D003767 9.6e-37 160.2 1285 23.5
Gohir.D07G026700 Gossypium hirsutum HOM05D004021 ORTHO05D003767 2.1e-36 159.1 1282 23.4
Migut.E01516 Erythranthe guttata HOM05D004021 ORTHO05D003767 7.6e-34 150.6 1212 23.8
Oeu015740.1 Olea europaea HOM05D004021 ORTHO05D003767 2.9e-33 148.7 427 30.9
TPR.G1392 Trifolium pratense HOM05D004021 ORTHO05D003767 3.8e-33 148.3 1291 24.3
CsaV3_2G030990 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.7e-31 142.1 1301 23.1
THA.LOC104814779 Tarenaya hassleriana HOM05D004021 ORTHO05D003767 1.3e-30 139.8 1280 23.3
Lj1g0012897 Lotus japonicus HOM05D004021 ORTHO05D003767 3.0e-30 138.7 1293 24.6
Lalb_Chr11g0064441 Lupinus albus HOM05D004021 ORTHO05D003767 2.5e-29 135.6 1252 23.3
Sed0007846 Sechium edule HOM05D004021 ORTHO05D003767 1.6e-28 132.9 1303 23.3
Gohir.D07G026600 Gossypium hirsutum HOM05D004021 ORTHO05D003767 8.1e-28 130.6 1262 24.0
MD15G1096000 Malus domestica HOM05D004021 ORTHO05D003767 5.3e-27 127.9 1110 23.6
Lj8P589T23 Lonicera japonica HOM05D004021 ORTHO05D003767 9.0e-27 127.1 509 28.5
ClCG08G012320 Citrullus lanatus HOM05D004021 ORTHO05D003767 1.5e-26 126.3 1306 23.6
SalBow1G4226 Salvia bowleyana HOM05D004021 ORTHO05D003767 2.0e-26 125.9 1046 24.1
Medtr3g110132 Medicago truncatula HOM05D004021 ORTHO05D003767 7.6e-26 124.0 1290 24.0
Lalb_Chr08g0243171 Lupinus albus HOM05D004021 ORTHO05D003767 9.9e-26 123.6 1271 21.7
VMungo1309G0329 Vigna mungo HOM05D004021 ORTHO05D003767 1.3e-25 123.2 1279 23.9
Medtr3g110082 Medicago truncatula HOM05D004021 ORTHO05D003767 2.2e-25 122.5 1281 24.0
CsaV3_3G048630 Cucumis sativus L. HOM05D004021 ORTHO05D003767 2.9e-25 122.1 1306 22.3
AL6G22200 Arabidopsis lyrata HOM05D004021 ORTHO05D003767 3.8e-25 121.7 1232 21.8
AT5G11530 Arabidopsis thaliana HOM05D004021 ORTHO05D003767 4.9e-25 121.3 1244 21.5
Phvul.009G107600 Phaseolus vulgaris HOM05D004021 ORTHO05D003767 4.9e-25 121.3 1268 23.2
BraA03t09842Z Brassica rapa HOM05D004021 ORTHO05D003767 2.4e-24 119.0 1189 22.4
MELO3C011152.2 Cucumis melo HOM05D004021 ORTHO05D003767 3.2e-24 118.6 1295 23.0
TWI63G0612 Tripterygium wilfordii HOM05D004021 ORTHO05D003767 5.4e-24 117.9 1306 23.0
Carub.0006s1000 Capsella rubella HOM05D004021 ORTHO05D003767 1.2e-23 116.7 1250 21.5
Sp6g32070 Schrenkiella parvula HOM05D004021 ORTHO05D003767 2.1e-23 115.9 1229 22.4
PGR044G0442 Punica granatum HOM05D004021 ORTHO05D003767 2.7e-23 115.5 1315 23.7
Sed0002796 Sechium edule HOM05D004021 ORTHO05D003767 2.7e-23 115.5 1289 22.6
PGSC0003DMG400005497 Solanum tuberosum HOM05D026527 ORTHO05D037674 6.0e-23 114.4 589 26.7
Ca_15608_v3 Cicer arietinum L. HOM05D004021 ORTHO05D003767 7.9e-23 114.0 1277 23.3
Lj8A589T33 Lonicera japonica HOM05D004021 ORTHO05D003767 1.3e-22 113.2 214 36.0
Aa31LG3G15670 Aethionema arabicum HOM05D004021 ORTHO05D003767 2.3e-22 112.5 1296 22.9
BcaC03g13370 Brassica carinata HOM05D004021 ORTHO05D003767 2.3e-22 112.5 1202 22.5
C02p05090 Brassica napus HOM05D004021 ORTHO05D003767 2.3e-22 112.5 1202 22.5
Glyma.04G081800 Glycine max HOM05D004021 ORTHO05D003767 3.0e-22 112.1 1256 22.9
Thhalv10003568m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 3.9e-22 111.7 1239 23.2
Psat5g022840 Pisum sativum HOM05D004021 ORTHO05D003767 3.9e-22 111.7 1303 24.0
BolC2t06463H Brassica oleracea HOM05D004021 ORTHO05D003767 6.7e-22 110.9 1202 22.6
Atru.chr7.2140 Acer truncatum HOM05D004021 ORTHO05D003767 1.1e-21 110.2 823 24.8
Migut.A00223 Erythranthe guttata HOM05D004021 ORTHO05D003767 1.5e-21 109.8 621 27.2
Psat5g022920 Pisum sativum HOM05D004021 ORTHO05D003767 1.5e-21 109.8 1301 22.8
Glyma.06G083500 Glycine max HOM05D004021 ORTHO05D003767 3.3e-21 108.6 1262 22.3
BraA02t05084Z Brassica rapa HOM05D004021 ORTHO05D003767 4.3e-21 108.2 1207 21.1
Eucgr.C02901 Eucalyptus grandis HOM05D004021 ORTHO05D003767 9.6e-21 107.1 1303 22.3
A02p01040 Brassica napus HOM05D004021 ORTHO05D003767 1.3e-20 106.7 1207 21.0
BolC3t13094H Brassica oleracea HOM05D004021 ORTHO05D003767 8.1e-20 104.0 1184 21.8
SGA_v2.0_scaffold163G38081 Striga asiatica HOM05D004021 ORTHO05D003767 1.1e-19 103.6 432 28.5
CARHR201690 Cardamine hirsuta HOM05D004021 ORTHO05D003767 4.0e-19 101.7 1238 22.3
Nn2g11674 Nelumbo nucifera HOM05D004021 ORTHO05D003767 4.0e-19 101.7 1376 21.5
Lalb_Chr01g0011141 Lupinus albus HOM05D004021 ORTHO05D003767 6.9e-19 100.9 1265 22.1
BcaNung01931 Brassica carinata HOM05D004021 ORTHO05D003767 9.0e-19 100.5 1235 22.3
Aa31LG11G4580 Aethionema arabicum HOM05D004021 ORTHO05D003767 2.6e-18 99.0 1196 22.4
Hund03406 Selenicereus undatus HOM05D012164 ORTHO05D003767 7.6e-18 97.4 1129 23.3
Nn3g18104 Nelumbo nucifera HOM05D004021 ORTHO05D003767 1.0e-17 97.1 1272 22.7
SalBow4G0344 Salvia bowleyana HOM05D004021 ORTHO05D003767 2.2e-17 95.9 441 26.3
A06p36400 Brassica napus HOM05D004021 ORTHO05D003767 3.8e-17 95.1 1213 21.4
MELO3C003457.2 Cucumis melo HOM05D004021 ORTHO05D003767 3.8e-17 95.1 1298 22.0
TAR626G0792 Trochodendron aralioides HOM05D004021 ORTHO05D003767 3.8e-17 95.1 546 26.9
MBI01_g30860_MAGBIO Magnolia biondii HOM05D004021 ORTHO05D003767 4.9e-17 94.7 1348 21.1
Lalb_Chr11g0064431 Lupinus albus HOM05D004021 ORTHO05D003767 6.4e-17 94.4 1254 21.1
Cpa.g.sc7.254 Carica papaya HOM05D004021 ORTHO05D003767 4.2e-16 91.7 114 43.9
BcaNung03924 Brassica carinata HOM05D004021 ORTHO05D003767 7.1e-16 90.9 1187 22.7
BolC7t44742H Brassica oleracea HOM05D004021 ORTHO05D003767 9.3e-16 90.5 1187 22.4
arahy.Tifrunner.gnm1.ann1.E545QA Arachis hypogaea HOM05D004021 ORTHO05D003767 1.2e-15 90.1 1237 22.6
C07p42110 Brassica napus HOM05D004021 ORTHO05D003767 1.6e-15 89.7 1187 22.3
DCAR_003118 Daucus carota HOM05D004021 ORTHO05D003767 2.7e-15 89.0 125 42.4
SGA_v2.0_scaffold169G38653 Striga asiatica HOM05D004021 ORTHO05D003767 3.5e-15 88.6 109 40.4
arahy.Tifrunner.gnm1.ann1.QM1LQ0 Arachis hypogaea HOM05D004021 ORTHO05D003767 6.0e-15 87.8 1277 21.4
BraA06t26563Z Brassica rapa HOM05D004021 ORTHO05D003767 3.9e-14 85.1 1206 21.4
unitig_578.g16592 Utricularia gibba HOM05D004021 ORTHO05D003767 8.7e-14 84.0 118 39.8
BcaB01g05477 Brassica carinata HOM05D004021 ORTHO05D003767 1.5e-13 83.2 90 43.3
C03p05810 Brassica napus HOM05D000602 ORTHO05D006896 1.5e-13 83.2 90 43.3
Dinv30474 Davidia involucrata HOM05D004021 ORTHO05D003767 1.5e-13 83.2 676 23.8
TAR626G0813 Trochodendron aralioides HOM05D004021 ORTHO05D003767 1.5e-13 83.2 113 46.9
ECA233G1986 Erigeron canadensis HOM05D004021 ORTHO05D003767 1.9e-13 82.8 1228 22.1
unitig_26.g9789 Utricularia gibba HOM05D004021 ORTHO05D003767 4.3e-13 81.6 208 30.3
ClCG11G015210 Citrullus lanatus HOM05D004021 ORTHO05D003767 5.7e-13 81.3 1001 23.2
A03p05080 Brassica napus HOM05D000602 ORTHO05D006896 1.6e-12 79.7 88 43.2
TAR383G0364 Trochodendron aralioides HOM05D004021 ORTHO05D003767 4.8e-12 78.2 582 25.6
CSS0003638 Camellia sinensis var. sinensis HOM05D004021 ORTHO05D003767 6.2e-12 77.8 1189 22.8
Cpa.g.sc7.255 Carica papaya HOM05D004021 ORTHO05D003767 6.2e-12 77.8 352 26.4
Atru.chr7.2139 Acer truncatum HOM05D004021 ORTHO05D003767 8.2e-12 77.4 181 32.0
Lalb_Chr22g0352261 Lupinus albus HOM05D004021 ORTHO05D003767 6.9e-11 74.3 90 41.1
Cpa.g.sc7.256 Carica papaya HOM05D004021 ORTHO05D003767 5.8e-10 71.2 342 26.6
Dinv38014 Davidia involucrata HOM05D004021 ORTHO05D003767 7.6e-10 70.9 305 27.5
Lsat_1_v5_gn_6_64101 Lactuca sativa HOM05D004021 ORTHO05D003767 7.6e-10 70.9 187 28.3
Ah.10g035100 Amaranthus hybridus HOM05D012164 ORTHO05D003767 2.2e-09 69.3 224 28.6
CDE05G1167 Ceratophyllum demersum HOM05D004021 ORTHO05D003767 6.5e-09 67.8 147 33.3
Lalb_Chr24g0396931 Lupinus albus HOM05D004021 ORTHO05D003767 6.5e-09 67.8 104 36.5
CDE05G1483 Ceratophyllum demersum HOM05D050580 ORTHO05D003767 5.5e-08 64.7 139 32.4
Thhalv10015703m.g Eutrema salsugineum HOM05D004021 ORTHO05D003767 5.5e-08 64.7 91 37.4
Lj4g0004076 Lotus japonicus HOM05D032889 ORTHO05D003767 9.3e-08 63.9 98 35.7
Hund19530 Selenicereus undatus HOM05D012164 ORTHO05D003767 1.2e-07 63.5 116 36.2
AUR62009309 Chenopodium quinoa HOM05D012164 ORTHO05D003767 1.6e-07 63.2 76 40.8
HanXRQChr09g0276591 Helianthus annuus HOM05D004021 ORTHO05D003767 2.7e-07 62.4 415 25.3
ATR0315G010 Amborella trichopoda HOM05D004021 ORTHO05D003767 3.5e-07 62.0 70 42.9
SEGI_07029 Sequoiadendron giganteum HOM05D004021 ORTHO05D003767 6.1e-07 61.2 70 42.9
vmacro18883 Vaccinium macrocarpon HOM05D004021 ORTHO05D003767 7.9e-07 60.8 314 25.2
Lj8P589T28 Lonicera japonica HOM05D004021 ORTHO05D003767 1.0e-06 60.5 365 21.6
Eucgr.E03518 Eucalyptus grandis HOM05D004021 ORTHO05D003767 1.3e-06 60.1 677 24.2
EL10Ac2g04051 Beta vulgaris HOM05D012164 ORTHO05D003767 3.9e-06 58.5 1071 22.2
SHI18661 Sapria himalayana HOM05D004021 ORTHO05D003767 3.9e-06 58.5 53 50.9
PSO782G1327 Papaver somniferum HOM05D004021 ORTHO05D003767 6.7e-06 57.8 1040 20.4


User provided reference genes

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