Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g069730.1 Solanum lycopersicum HOM05D007861 ORTHO05D007271 3.9e-54 214.5 109 100.0
PGSC0003DMG400019683 Solanum tuberosum HOM05D007861 ORTHO05D007271 1.3e-25 119.8 66 86.4
Sopen06g031390 Solanum pennellii HOM05D039995 ORTHO05D007271 3.6e-15 85.1 101 42.6
Prupe.6G107700 Prunus persica HOM05D007861 ORTHO05D007271 5.4e-11 71.2 98 42.9
Nitab4.5_0000106g0370 Nicotiana tabacum HOM05D039995 ORTHO05D007271 2.0e-10 69.3 80 45.0
MSTRG.21100 Avicennia marina HOM05D007861 ORTHO05D007271 3.5e-10 68.6 64 53.1
Atru.chr3.3557 Acer truncatum HOM05D007861 ORTHO05D007271 4.6e-10 68.2 94 44.7
Gorai.004G230800 Gossypium raimondii HOM05D007861 ORTHO05D007271 4.6e-10 68.2 101 40.6
Cfa010349 Carpinus fangiana HOM05D007861 ORTHO05D007271 7.8e-10 67.4 71 47.9
Gohir.D08G217100 Gossypium hirsutum HOM05D007861 ORTHO05D007271 7.8e-10 67.4 101 40.6
Nn2g13767 Nelumbo nucifera HOM05D007861 ORTHO05D007271 7.8e-10 67.4 103 37.9
TAR633G0087 Trochodendron aralioides HOM05D007861 ORTHO05D007271 2.3e-09 65.9 76 44.7
Glyma.12G079100 Glycine max HOM05D007861 ORTHO05D007271 3.0e-09 65.5 113 38.9
Gohir.A08G200000 Gossypium hirsutum HOM05D007861 ORTHO05D007271 3.0e-09 65.5 101 40.6
Hma1.2p1_0569F.1_g180260 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 3.0e-09 65.5 41 63.4
arahy.Tifrunner.gnm1.ann1.ALS1H8 Arachis hypogaea HOM05D007861 ORTHO05D007271 1.1e-08 63.5 50 58.0
CiPaw.13G118000 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.1e-08 63.5 109 38.5
Haze_23757 Corylus avellana HOM05D007861 ORTHO05D007271 1.1e-08 63.5 101 38.6
DCAR_018786 Daucus carota HOM05D007861 ORTHO05D007271 1.1e-08 63.5 76 42.1
Potri.010G226200 Populus trichocarpa HOM05D007861 ORTHO05D007271 1.5e-08 63.2 92 42.4
QL08p054789 Quercus lobata HOM05D009695 ORTHO05D007271 1.5e-08 63.2 44 61.4
Lalb_Chr03g0027611 Lupinus albus HOM05D007861 ORTHO05D007271 1.9e-08 62.8 85 38.8
Lalb_Chr14g0374511 Lupinus albus HOM05D007861 ORTHO05D007271 1.9e-08 62.8 47 61.7
Lalb_Chr24g0394821 Lupinus albus HOM05D007861 ORTHO05D007271 1.9e-08 62.8 47 61.7
Phvul.011G083700 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 1.9e-08 62.8 45 60.0
Hma1.2p1_0344F.1_g131140 Hydrangea macrophylla HOM05D007861 ORTHO05D007271 2.5e-08 62.4 67 44.8
COL.COLO4_34705 Corchorus olitorius HOM05D007861 ORTHO05D007271 4.3e-08 61.6 96 38.5
Nitab4.5_0006989g0010 Nicotiana tabacum HOM05D039995 ORTHO05D007271 4.3e-08 61.6 80 42.5
Potri.008G036000 Populus trichocarpa HOM05D007861 ORTHO05D007271 5.6e-08 61.2 94 40.4
Medtr4g057830 Medicago truncatula HOM05D007861 ORTHO05D007271 7.3e-08 60.8 63 50.8
Glyma.11G195000 Glycine max HOM05D007861 ORTHO05D007271 9.5e-08 60.5 109 39.4
Manes.07G095300 Manihot esculenta HOM05D009695 ORTHO05D007271 1.2e-07 60.1 102 37.3
Ciclev10029681m.g Citrus clementina HOM05D007861 ORTHO05D007271 1.6e-07 59.7 95 41.1
Migut.N02575 Erythranthe guttata HOM05D007861 ORTHO05D007271 1.6e-07 59.7 89 39.3
Lj3g0021425 Lotus japonicus HOM05D007861 ORTHO05D007271 1.6e-07 59.7 73 41.1
CsaV3_6G014180 Cucumis sativus L. HOM05D007861 ORTHO05D007271 2.8e-07 58.9 103 36.9
Lsat_1_v5_gn_6_43600 Lactuca sativa HOM05D007861 ORTHO05D007271 3.6e-07 58.5 41 61.0
Lj3g0027314 Lotus japonicus HOM05D007861 ORTHO05D007271 4.7e-07 58.2 100 35.0
Sabra10G0174600 Salix brachista HOM05D007861 ORTHO05D007271 4.7e-07 58.2 38 65.8
CiPaw.02G172600 Carya illinoinensis HOM05D019773 ORTHO05D007271 6.2e-07 57.8 56 51.8
Thhalv10017662m.g Eutrema salsugineum HOM05D014739 ORTHO05D007271 6.2e-07 57.8 91 39.6
Gohir.A05G106400 Gossypium hirsutum HOM05D007861 ORTHO05D007271 8.0e-07 57.4 62 48.4
Lalb_Chr01g0004491 Lupinus albus HOM05D007861 ORTHO05D007271 8.0e-07 57.4 92 41.3
Psat6g181720 Pisum sativum HOM05D007861 ORTHO05D007271 8.0e-07 57.4 60 46.7
Sed0005749 Sechium edule HOM05D007861 ORTHO05D007271 8.0e-07 57.4 94 38.3
Migut.D02257 Erythranthe guttata HOM05D007861 ORTHO05D007271 1.1e-06 57.0 90 37.8
Manes.10G049800 Manihot esculenta HOM05D009695 ORTHO05D007271 1.1e-06 57.0 111 36.0
CiPaw.14G086500 Carya illinoinensis HOM05D007861 ORTHO05D007271 1.4e-06 56.6 91 36.3
MELO3C026916.2 Cucumis melo HOM05D007861 ORTHO05D007271 1.4e-06 56.6 97 38.1
Glyma.12G177000 Glycine max HOM05D007861 ORTHO05D007271 1.4e-06 56.6 97 38.1
Gohir.D05G106401 Gossypium hirsutum HOM05D007861 ORTHO05D007271 1.8e-06 56.2 62 48.4
Gorai.009G110500 Gossypium raimondii HOM05D007861 ORTHO05D007271 1.8e-06 56.2 62 48.4
Thecc.10G081700 Theobroma cacao HOM05D009695 ORTHO05D007271 1.8e-06 56.2 45 53.3
Manes.04G015900 Manihot esculenta HOM05D007861 ORTHO05D007271 2.3e-06 55.8 83 41.0
Nn2g11569 Nelumbo nucifera HOM05D007861 ORTHO05D007271 3.1e-06 55.5 94 33.0
Rhsim03G0116500 Rhododendron simsii HOM05D009695 ORTHO05D007271 3.1e-06 55.5 43 53.5
ClCG02G021400 Citrullus lanatus HOM05D007861 ORTHO05D007271 4.0e-06 55.1 66 42.4
COL.COLO4_10198 Corchorus olitorius HOM05D009695 ORTHO05D007271 4.0e-06 55.1 45 53.3
FAN21G2212 Fragaria x ananassa HOM05D007861 ORTHO05D007271 4.0e-06 55.1 93 36.6
Sed0017526 Sechium edule HOM05D007861 ORTHO05D007271 4.0e-06 55.1 102 36.3
TPR.G10289 Trifolium pratense HOM05D007861 ORTHO05D007271 4.0e-06 55.1 95 35.8
Aqoxy1G01166 Aquilegia oxysepala HOM05D007861 ORTHO05D007271 5.2e-06 54.7 98 36.7
BcaB06g28183 Brassica carinata HOM05D014739 ORTHO05D007271 5.2e-06 54.7 63 49.2
BcaC02g08213 Brassica carinata HOM05D014739 ORTHO05D007271 5.2e-06 54.7 63 49.2
A04p21280 Brassica napus HOM05D014739 ORTHO05D007271 5.2e-06 54.7 63 49.2
BolC4t27246H Brassica oleracea HOM05D014739 ORTHO05D007271 5.2e-06 54.7 63 49.2
CSS0012629 Camellia sinensis var. sinensis HOM05D007861 ORTHO05D007271 5.2e-06 54.7 83 38.6
Thhalv10011102m.g Eutrema salsugineum HOM05D009695 ORTHO05D007271 5.2e-06 54.7 48 50.0
C04p57110 Brassica napus HOM05D014739 ORTHO05D007271 6.8e-06 54.3 61 45.9
Carub.0004s0882 Capsella rubella HOM05D014739 ORTHO05D007271 6.8e-06 54.3 98 36.7
Phvul.007G098200 Phaseolus vulgaris HOM05D007861 ORTHO05D007271 6.8e-06 54.3 98 38.8
TPR.G6167 Trifolium pratense HOM05D007861 ORTHO05D007271 6.8e-06 54.3 102 40.2
BraA04t17695Z Brassica rapa HOM05D014739 ORTHO05D007271 8.9e-06 53.9 42 57.1


User provided reference genes

Program Settings