Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g069300.2 Solanum lycopersicum HOM05D000055 ORTHO05D003892 5.2e-110 401.0 192 100.0
Sopen11g028030 Solanum pennellii HOM05D000055 ORTHO05D003892 2.2e-100 369.0 177 100.0
PGSC0003DMG400008108 Solanum tuberosum HOM05D000055 ORTHO05D003892 2.1e-87 325.9 164 94.5
CAN.G631.17 Capsicum annuum HOM05D000055 ORTHO05D003892 1.1e-83 313.5 177 85.3
Nitab4.5_0000650g0130 Nicotiana tabacum HOM05D000055 ORTHO05D003892 2.1e-79 299.3 175 81.1
Nitab4.5_0003701g0050 Nicotiana tabacum HOM05D000055 ORTHO05D003892 2.1e-79 299.3 173 82.1
Nitab4.5_0000181g0050 Nicotiana tabacum HOM05D000055 ORTHO05D003892 1.0e-65 253.8 177 74.0
Nitab4.5_0011503g0020 Nicotiana tabacum HOM05D000055 ORTHO05D003892 8.7e-65 250.8 177 72.9
MSTRG.21130 Avicennia marina HOM05D000055 ORTHO05D003892 3.1e-62 242.3 183 65.6
Dinv32758 Davidia involucrata HOM05D000055 ORTHO05D003892 5.9e-61 238.0 172 68.6
Peaxi162Scf00270g00098 Petunia axillaris HOM05D000055 ORTHO05D003892 5.9e-61 238.0 166 74.1
CSS0032288 Camellia sinensis var. sinensis HOM05D000055 ORTHO05D003892 2.9e-60 235.7 185 64.3
Cc01_g11240 Coffea canephora HOM05D000055 ORTHO05D003892 1.1e-59 233.8 177 67.2
CiPaw.13G112000 Carya illinoinensis HOM05D000055 ORTHO05D003892 7.2e-59 231.1 177 65.0
Cfa011330 Carpinus fangiana HOM05D000055 ORTHO05D003892 1.9e-56 223.0 178 64.6
Actinidia03736 Actinidia chinensis HOM05D000055 ORTHO05D003892 2.2e-55 219.5 185 62.2
Rhsim13G0093800 Rhododendron simsii HOM05D000055 ORTHO05D003892 1.1e-54 217.2 180 61.7
SGA_v2.0_scaffold97G29216 Striga asiatica HOM05D000055 ORTHO05D003892 3.1e-54 215.7 194 59.8
TAR636G2561 Trochodendron aralioides HOM05D000055 ORTHO05D003892 4.1e-54 215.3 177 64.4
QL01p022404 Quercus lobata HOM05D000055 ORTHO05D003892 5.3e-54 214.9 177 63.8
RcHm_v2.0_Chr5g0059631 Rosa chinensis HOM05D000055 ORTHO05D003892 2.0e-53 213.0 188 60.6
MSTRG.17813 Avicennia marina HOM05D000055 ORTHO05D003892 2.6e-53 212.6 182 60.4
Actinidia07130 Actinidia chinensis HOM05D000055 ORTHO05D003892 4.5e-53 211.8 178 62.4
ECA233G4401 Erigeron canadensis HOM05D000055 ORTHO05D003892 5.9e-53 211.5 194 59.8
vmacro03192 Vaccinium macrocarpon HOM05D000055 ORTHO05D003892 5.9e-53 211.5 209 54.5
HanXRQChr02g0055721 Helianthus annuus HOM05D000055 ORTHO05D003892 7.7e-53 211.1 194 59.3
FvH4_3g32550 Fragaria vesca HOM05D000055 ORTHO05D003892 1.7e-52 209.9 177 60.5
FAN25G2930 Fragaria x ananassa HOM05D000055 ORTHO05D003892 2.2e-52 209.5 177 60.5
Lj1C190G12 Lonicera japonica HOM05D000055 ORTHO05D003892 3.8e-52 208.8 179 62.6
SalBow3G2078 Salvia bowleyana HOM05D000055 ORTHO05D003892 3.8e-52 208.8 177 61.6
Nn2g10768 Nelumbo nucifera HOM05D000055 ORTHO05D003892 1.4e-51 206.8 185 58.4
PGR102G0854 Punica granatum HOM05D000055 ORTHO05D003892 2.5e-51 206.1 180 61.1
Lsat_1_v5_gn_6_46181 Lactuca sativa HOM05D000055 ORTHO05D003892 3.2e-51 205.7 201 56.2
FAN11G2098 Fragaria x ananassa HOM05D000055 ORTHO05D003892 4.2e-51 205.3 180 59.4
Prupe.6G100200 Prunus persica HOM05D000055 ORTHO05D003892 5.5e-51 204.9 164 64.6
FAN21G3773 Fragaria x ananassa HOM05D000055 ORTHO05D003892 9.4e-51 204.1 180 59.4
TAR623G1161 Trochodendron aralioides HOM05D000055 ORTHO05D003892 9.4e-51 204.1 185 60.0
TWI79G0113 Tripterygium wilfordii HOM05D000055 ORTHO05D003892 1.6e-50 203.4 181 62.4
CsaV3_6G013850 Cucumis sativus L. HOM05D000055 ORTHO05D003892 2.1e-50 203.0 177 60.5
FAN16G0066 Fragaria x ananassa HOM05D000055 ORTHO05D003892 2.1e-50 203.0 180 58.9
Hma1.2p1_1031F.1_g249950 Hydrangea macrophylla HOM05D000055 ORTHO05D003892 2.1e-50 203.0 165 62.4
Oeu002458.1 Olea europaea HOM05D000055 ORTHO05D003892 2.1e-50 203.0 177 62.1
TWI31G1287 Tripterygium wilfordii HOM05D000055 ORTHO05D003892 2.1e-50 203.0 181 62.4
Eucgr.B02491 Eucalyptus grandis HOM05D000055 ORTHO05D003892 3.6e-50 202.2 179 60.9
Rhsim01G0217700 Rhododendron simsii HOM05D000055 ORTHO05D003892 7.9e-50 201.1 177 59.3
ClCG02G021100 Citrullus lanatus HOM05D000055 ORTHO05D003892 1.0e-49 200.7 177 59.9
Thecc.09G257000 Theobroma cacao HOM05D000055 ORTHO05D003892 1.0e-49 200.7 177 60.5
Lsat_1_v5_gn_1_65461 Lactuca sativa HOM05D000055 ORTHO05D003892 1.4e-49 200.3 185 60.0
SalBow3G0288 Salvia bowleyana HOM05D000055 ORTHO05D003892 1.4e-49 200.3 199 52.8
ECA248G2155 Erigeron canadensis HOM05D000055 ORTHO05D003892 1.8e-49 199.9 181 59.7
MELO3C025767.2 Cucumis melo HOM05D000055 ORTHO05D003892 2.3e-49 199.5 177 59.9
HanXRQChr01g0018391 Helianthus annuus HOM05D000055 ORTHO05D003892 2.3e-49 199.5 185 60.0
Haze_23862 Corylus avellana HOM05D000055 ORTHO05D003892 3.0e-49 199.1 218 51.8
Manes.11G144200 Manihot esculenta HOM05D000055 ORTHO05D003892 5.1e-49 198.4 177 59.9
Sc06g0006930 Simmondsia chinensis HOM05D000055 ORTHO05D003892 6.7e-49 198.0 179 59.2
TAR633G0710 Trochodendron aralioides HOM05D000055 ORTHO05D003892 8.8e-49 197.6 185 58.9
Gorai.009G078200 Gossypium raimondii HOM05D000055 ORTHO05D003892 2.6e-48 196.1 177 58.8
MD11G1134400 Malus domestica HOM05D000055 ORTHO05D003892 2.6e-48 196.1 164 64.0
Gohir.A05G073900 Gossypium hirsutum HOM05D000055 ORTHO05D003892 4.4e-48 195.3 177 58.8
CiPaw.14G079900 Carya illinoinensis HOM05D000055 ORTHO05D003892 9.7e-48 194.1 183 59.0
DCAR_015541 Daucus carota HOM05D000055 ORTHO05D003892 1.1e-46 190.7 153 63.4
DCAR_006057 Daucus carota HOM05D000055 ORTHO05D003892 1.4e-46 190.3 183 57.4
Duzib150G1261 Durio zibethinus HOM05D000055 ORTHO05D003892 1.4e-46 190.3 181 57.5
Atru.chr3.3642 Acer truncatum HOM05D000055 ORTHO05D003892 1.8e-46 189.9 177 59.3
Phvul.011G078300 Phaseolus vulgaris HOM05D000055 ORTHO05D003892 7.0e-46 188.0 179 55.3
Cpa.g.sc216.16 Carica papaya HOM05D000055 ORTHO05D003892 9.1e-46 187.6 177 57.6
Ciclev10028546m.g Citrus clementina HOM05D000055 ORTHO05D003892 1.5e-45 186.8 180 53.9
Aqoxy1G01251 Aquilegia oxysepala HOM05D000055 ORTHO05D003892 3.4e-45 185.7 171 57.3
Phvul.005G135922 Phaseolus vulgaris HOM05D000055 ORTHO05D003892 4.5e-45 185.3 178 57.3
CANSAT54G2619 Cannabis sativa HOM05D000055 ORTHO05D003892 1.7e-44 183.3 178 56.2
Duzib168G0484 Durio zibethinus HOM05D000055 ORTHO05D003892 1.7e-44 183.3 177 55.9
VMungo1127G1522 Vigna mungo HOM05D000055 ORTHO05D003892 2.2e-44 183.0 180 55.0
vmacro14443 Vaccinium macrocarpon HOM05D000055 ORTHO05D003892 2.9e-44 182.6 208 50.0
Sed0006682 Sechium edule HOM05D000614 ORTHO05D003892 3.8e-44 182.2 177 55.4
Hund05740 Selenicereus undatus HOM05D000055 ORTHO05D003892 6.5e-44 181.4 184 56.5
Medtr4g059560 Medicago truncatula HOM05D000055 ORTHO05D003892 8.5e-44 181.0 175 55.4
Sabra04G0142300 Salix brachista HOM05D000055 ORTHO05D003892 8.5e-44 181.0 180 56.7
Gohir.A08G008700 Gossypium hirsutum HOM05D000055 ORTHO05D003892 3.2e-43 179.1 186 52.7
VMungo1080G1375 Vigna mungo HOM05D000055 ORTHO05D003892 3.2e-43 179.1 178 55.1
arahy.Tifrunner.gnm1.ann1.E5GBGH Arachis hypogaea HOM05D000055 ORTHO05D003892 4.2e-43 178.7 168 54.2
Manes.04G022100 Manihot esculenta HOM05D000055 ORTHO05D003892 5.5e-43 178.3 177 55.4
arahy.Tifrunner.gnm1.ann1.E1CD9Y Arachis hypogaea HOM05D000055 ORTHO05D003892 7.2e-43 177.9 168 53.6
Glyma.12G068500 Glycine max HOM05D000055 ORTHO05D003892 7.2e-43 177.9 178 53.9
Glyma.13G326900 Glycine max HOM05D000055 ORTHO05D003892 7.2e-43 177.9 178 55.6
Glyma.11G147500 Glycine max HOM05D000055 ORTHO05D003892 9.4e-43 177.6 179 52.5
PSO063G7525 Papaver somniferum HOM05D000055 ORTHO05D003892 9.4e-43 177.6 180 55.0
Glyma.12G173600 Glycine max HOM05D000055 ORTHO05D003892 2.1e-42 176.4 179 56.4
TPR.G15553 Trifolium pratense HOM05D000055 ORTHO05D003892 4.7e-42 175.3 180 53.9
Lalb_Chr01g0004251 Lupinus albus HOM05D000055 ORTHO05D003892 8.0e-42 174.5 177 53.7
PSO339G0350 Papaver somniferum HOM05D000055 ORTHO05D003892 1.4e-41 173.7 180 53.9
Gohir.D08G018700 Gossypium hirsutum HOM05D000055 ORTHO05D003892 2.3e-41 172.9 185 51.4
Gorai.004G013200 Gossypium raimondii HOM05D000055 ORTHO05D003892 2.3e-41 172.9 185 51.4
Sabra09G0008400 Salix brachista HOM05D000055 ORTHO05D003892 1.1e-40 170.6 187 54.0
EL10Ac7g16406 Beta vulgaris HOM05D000055 ORTHO05D003892 3.3e-40 169.1 178 52.8
Gohir.D07G122200 Gossypium hirsutum HOM05D000055 ORTHO05D003892 3.3e-40 169.1 178 52.2
Lj3g0014873 Lotus japonicus HOM05D000055 ORTHO05D003892 3.3e-40 169.1 147 59.9
Lalb_Chr19g0137341 Lupinus albus HOM05D000055 ORTHO05D003892 4.4e-40 168.7 179 54.2
Gorai.001G132000 Gossypium raimondii HOM05D000055 ORTHO05D003892 5.7e-40 168.3 178 52.2
THA.LOC104799499 Tarenaya hassleriana HOM05D000055 ORTHO05D003892 5.7e-40 168.3 188 50.0
AT3G45240 Arabidopsis thaliana HOM05D000055 ORTHO05D003892 9.7e-40 167.5 184 51.6
Ca_01420_v3 Cicer arietinum L. HOM05D000055 ORTHO05D003892 1.7e-39 166.8 179 53.6
Gohir.A07G117900 Gossypium hirsutum HOM05D000055 ORTHO05D003892 1.7e-39 166.8 178 52.2
Potri.009G012900 Populus trichocarpa HOM05D000055 ORTHO05D003892 1.7e-39 166.8 188 52.1
Lalb_Chr22g0350221 Lupinus albus HOM05D000055 ORTHO05D003892 2.2e-39 166.4 126 67.5
PSO339G3375 Papaver somniferum HOM05D000055 ORTHO05D003892 2.2e-39 166.4 177 54.8
PSO384G4136 Papaver somniferum HOM05D000055 ORTHO05D003892 2.2e-39 166.4 177 54.8
Medtr2g094090 Medicago truncatula HOM05D000055 ORTHO05D003892 2.8e-39 166.0 178 53.9
TPR.G11565 Trifolium pratense HOM05D000055 ORTHO05D003892 2.8e-39 166.0 177 52.0
HPP92_005398 Vanilla planifolia HOM05D000055 ORTHO05D003892 4.8e-39 165.2 180 50.6
BolC9t58195H Brassica oleracea HOM05D000055 ORTHO05D003892 1.1e-38 164.1 178 52.2
MBI07_g19318_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D003892 1.1e-38 164.1 191 50.3
BcaB08g36351 Brassica carinata HOM05D000055 ORTHO05D003892 1.4e-38 163.7 178 51.7
BcaC04g19713 Brassica carinata HOM05D000055 ORTHO05D003892 1.4e-38 163.7 178 51.7
C09p53200 Brassica napus HOM05D000055 ORTHO05D003892 1.4e-38 163.7 178 51.7
Migut.D02211 Erythranthe guttata HOM05D000055 ORTHO05D003892 1.4e-38 163.7 125 64.8
THA.LOC104810850 Tarenaya hassleriana HOM05D000055 ORTHO05D003892 1.4e-38 163.7 183 49.7
Ah.08g216770 Amaranthus hybridus HOM05D000055 ORTHO05D003892 1.8e-38 163.3 182 51.6
Ah.15g094100 Amaranthus hybridus HOM05D000055 ORTHO05D003892 1.8e-38 163.3 175 52.6
Psat5g277920 Pisum sativum HOM05D000055 ORTHO05D003892 1.8e-38 163.3 179 52.5
A10p17740 Brassica napus HOM05D000055 ORTHO05D003892 2.4e-38 162.9 178 52.2
BraA10t43852Z Brassica rapa HOM05D000055 ORTHO05D003892 2.4e-38 162.9 178 52.2
CDE07G1595 Ceratophyllum demersum HOM05D000055 ORTHO05D003892 4.1e-38 162.2 170 50.6
HPP92_012805 Vanilla planifolia HOM05D000055 ORTHO05D003892 4.1e-38 162.2 180 52.8
Ca_05252_v3 Cicer arietinum L. HOM05D000055 ORTHO05D003892 5.3e-38 161.8 237 40.9
Lj3g0023786 Lotus japonicus HOM05D000055 ORTHO05D003892 4.5e-37 158.7 177 50.8
Aa31LG1G12540 Aethionema arabicum HOM05D000055 ORTHO05D003892 2.2e-36 156.4 185 50.3
Sp6g22120 Schrenkiella parvula HOM05D000055 ORTHO05D003892 2.2e-36 156.4 184 50.5
Thhalv10013666m.g Eutrema salsugineum HOM05D000055 ORTHO05D003892 3.8e-36 155.6 110 70.0
AL5G23810 Arabidopsis lyrata HOM05D000055 ORTHO05D003892 5.0e-36 155.2 187 49.7
unitig_747.g22000 Utricularia gibba HOM05D000055 ORTHO05D003892 5.0e-36 155.2 162 55.6
Psat7g224720 Pisum sativum HOM05D000055 ORTHO05D003892 6.5e-36 154.8 181 49.7
GSVIVG01025173001 Vitis vinifera HOM05D000055 ORTHO05D003892 6.5e-36 154.8 103 72.8
Sp5g16060 Schrenkiella parvula HOM05D000055 ORTHO05D003892 1.5e-35 153.7 110 68.2
CARHR150700 Cardamine hirsuta HOM05D000055 ORTHO05D003892 2.5e-35 152.9 183 48.6
ATR0115G016 Amborella trichopoda HOM05D000055 ORTHO05D003892 5.5e-35 151.8 166 51.8
Carub.0005s1102 Capsella rubella HOM05D000055 ORTHO05D003892 9.4e-35 151.0 110 67.3
Aa31LG4G14560 Aethionema arabicum HOM05D000055 ORTHO05D003892 1.2e-34 150.6 144 54.9
SEGI_17972 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 1.2e-34 150.6 182 50.0
CARHR274210 Cardamine hirsuta HOM05D000055 ORTHO05D003892 1.6e-34 150.2 177 50.3
Thhalv10002549m.g Eutrema salsugineum HOM05D000055 ORTHO05D003892 1.6e-34 150.2 110 68.2
AL8G37140 Arabidopsis lyrata HOM05D000055 ORTHO05D003892 2.1e-34 149.8 184 47.3
Actinidia20449 Actinidia chinensis HOM05D000055 ORTHO05D003892 8.0e-34 147.9 185 46.5
Os03g0711300 Oryza sativa ssp. japonica HOM05D000055 ORTHO05D003892 8.0e-34 147.9 213 43.7
BcaC03g13960 Brassica carinata HOM05D000055 ORTHO05D003892 2.3e-33 146.4 177 48.6
BcaB05g22653 Brassica carinata HOM05D000055 ORTHO05D003892 3.0e-33 146.0 110 66.4
BolC2t07246H Brassica oleracea HOM05D000055 ORTHO05D003892 3.0e-33 146.0 177 48.6
AT5G60550 Arabidopsis thaliana HOM05D000055 ORTHO05D003892 5.2e-33 145.2 110 65.5
BraA02t05716Z Brassica rapa HOM05D000055 ORTHO05D003892 6.7e-33 144.8 182 48.9
Carub.0008s2124 Capsella rubella HOM05D000055 ORTHO05D003892 6.7e-33 144.8 184 46.2
C02p11590 Brassica napus HOM05D000055 ORTHO05D003892 2.0e-32 143.3 177 48.0
Zm00001eb427480 Zea mays HOM05D000055 ORTHO05D003892 9.7e-32 141.0 213 41.8
TPR.G23906 Trifolium pratense HOM05D000055 ORTHO05D003892 2.2e-31 139.8 93 71.0
Lj2A1030G59 Lonicera japonica HOM05D000055 ORTHO05D003892 3.7e-31 139.0 94 75.5
Zm00001eb075500 Zea mays HOM05D000055 ORTHO05D003892 4.8e-31 138.7 205 41.0
AUR62001489 Chenopodium quinoa HOM05D000055 ORTHO05D003892 1.1e-30 137.5 110 63.6
Gohir.D05G076800 Gossypium hirsutum HOM05D000055 ORTHO05D003892 3.1e-30 136.0 177 46.3
TPR.G27044 Trifolium pratense HOM05D000055 ORTHO05D003892 4.4e-24 115.5 78 70.5
MBI19_g17414_MAGBIO Magnolia biondii HOM05D000055 ORTHO05D003892 5.7e-24 115.2 187 40.6
Pp3c22_18850 Physcomitrium patens HOM05D000055 ORTHO05D003892 5.7e-24 115.2 206 38.8
Pp3c2_14270 Physcomitrium patens HOM05D000055 ORTHO05D003892 1.3e-23 114.0 199 42.2
Mapoly0069s0064 Marchantia polymorpha HOM05D000055 ORTHO05D003892 2.8e-23 112.8 190 41.1
HPP92_020313 Vanilla planifolia HOM05D010659 ORTHO05D003892 1.2e-21 107.5 165 43.6
Oeu025527.2 Olea europaea HOM05D000055 ORTHO05D003892 7.7e-21 104.8 99 57.6
Migut.O00632 Erythranthe guttata HOM05D000055 ORTHO05D003892 2.3e-20 103.2 78 66.7
Pp3c10_8000 Physcomitrium patens HOM05D000055 ORTHO05D003892 2.5e-19 99.8 108 52.8
Pp3c1_23490 Physcomitrium patens HOM05D000055 ORTHO05D003892 3.3e-19 99.4 165 43.0
Sabra03G0160600 Salix brachista HOM05D000055 ORTHO05D003892 9.5e-19 97.8 170 39.4
SEGI_38168 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 2.8e-18 96.3 79 60.8
Potri.003G215201 Populus trichocarpa HOM05D000055 ORTHO05D003892 1.4e-17 94.0 170 36.5
TAR633G1429 Trochodendron aralioides HOM05D000055 ORTHO05D414604 1.4e-17 94.0 141 44.0
Duzib106G1552 Durio zibethinus HOM05D000055 ORTHO05D003892 5.2e-17 92.0 94 52.1
Potri.001G010700 Populus trichocarpa HOM05D000055 ORTHO05D003892 6.8e-17 91.7 94 50.0
Atru.chr3.2173 Acer truncatum HOM05D000055 ORTHO05D003892 1.2e-16 90.9 84 53.6
SEGI_01883 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 3.4e-16 89.4 73 61.6
SMO275G0017 Selaginella moellendorffii HOM05D000055 ORTHO05D003892 4.4e-16 89.0 63 69.8
SEGI_03957 Sequoiadendron giganteum HOM05D000055 ORTHO05D003892 1.7e-12 77.0 80 52.5
Thecc.10G171700 Theobroma cacao HOM05D000055 ORTHO05D003892 1.1e-11 74.3 72 55.6
GSVIVG01025378001 Vitis vinifera HOM05D000055 ORTHO05D003892 1.1e-11 74.3 72 51.4
Actinidia24094 Actinidia chinensis HOM05D000055 ORTHO05D003892 3.6e-10 69.3 43 76.7
TPR.G31308 Trifolium pratense HOM05D000055 ORTHO05D003892 4.0e-09 65.9 37 81.1


User provided reference genes

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