Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g069210.2 Solanum lycopersicum HOM05D008415 ORTHO05D010601 8.3e-152 540.4 289 100.0
Sopen11g027940 Solanum pennellii HOM05D008415 ORTHO05D010601 6.8e-138 494.2 289 93.1
PGSC0003DMG400008064 Solanum tuberosum HOM05D008415 ORTHO05D010601 5.8e-137 491.1 296 89.2
CAN.G631.8 Capsicum annuum HOM05D008415 ORTHO05D010601 9.0e-106 387.5 285 75.1
Nitab4.5_0000650g0050 Nicotiana tabacum HOM05D008415 ORTHO05D010601 2.1e-99 366.3 290 71.0
Peaxi162Scf00351g00214 Petunia axillaris HOM05D008415 ORTHO05D010601 1.3e-93 347.1 290 67.2
Oeu059099.1 Olea europaea HOM05D008415 ORTHO05D010601 1.4e-61 240.7 262 53.8
Dinv32770 Davidia involucrata HOM05D008415 ORTHO05D010601 9.1e-58 228.0 248 55.6
QL01p023166 Quercus lobata HOM05D008415 ORTHO05D010601 5.2e-53 212.2 245 52.2
SalBow3G0300 Salvia bowleyana HOM05D008415 ORTHO05D010601 2.6e-52 209.9 251 49.8
Cc01_g11390 Coffea canephora HOM05D008415 ORTHO05D010601 4.4e-52 209.1 256 49.2
Migut.D02196 Erythranthe guttata HOM05D008415 ORTHO05D010601 9.8e-52 208.0 254 48.4
GSVIVG01025161001 Vitis vinifera HOM05D008415 ORTHO05D010601 6.3e-51 205.3 248 48.8
MSTRG.18650 Avicennia marina HOM05D008415 ORTHO05D010601 1.1e-50 204.5 276 47.1
SGA_v2.0_scaffold61G21159 Striga asiatica HOM05D008415 ORTHO05D010601 2.4e-50 203.4 237 52.3
TAR633G1891 Trochodendron aralioides HOM05D008415 ORTHO05D010601 9.1e-50 201.4 258 49.6
Rhsim01G0218700 Rhododendron simsii HOM05D008415 ORTHO05D010601 2.3e-48 196.8 266 48.9
Sed0001336 Sechium edule HOM05D008415 ORTHO05D010601 4.7e-46 189.1 233 48.1
MELO3C025762.2 Cucumis melo HOM05D008415 ORTHO05D010601 6.8e-45 185.3 242 46.3
CsaV3_6G021730 Cucumis sativus L. HOM05D008415 ORTHO05D010601 6.8e-45 185.3 242 47.5
ClCG02G021040 Citrullus lanatus HOM05D008415 ORTHO05D010601 1.2e-44 184.5 245 47.8
Lsat_1_v5_gn_2_98161 Lactuca sativa HOM05D008415 ORTHO05D010601 2.0e-44 183.7 255 49.0
Eucgr.J00943 Eucalyptus grandis HOM05D008415 ORTHO05D010601 3.4e-44 183.0 305 39.0
vmacro14451 Vaccinium macrocarpon HOM05D008415 ORTHO05D010601 9.8e-44 181.4 272 44.5
ECA238G2082 Erigeron canadensis HOM05D008415 ORTHO05D010601 8.3e-43 178.3 236 47.9
CSS0041118 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 7.8e-41 171.8 244 44.7
Glyma.12G070700 Glycine max HOM05D008415 ORTHO05D010601 5.0e-40 169.1 240 46.7
Actinidia03741 Actinidia chinensis HOM05D008415 ORTHO05D010601 1.5e-39 167.5 238 46.6
PGR119G0199 Punica granatum HOM05D008415 ORTHO05D010601 1.5e-39 167.5 214 46.7
Lj3g0013437 Lotus japonicus HOM05D008415 ORTHO05D010601 4.3e-39 166.0 249 41.8
Psat7g223880 Pisum sativum HOM05D008415 ORTHO05D010601 2.8e-38 163.3 242 46.7
Glyma.11G154841 Glycine max HOM05D008415 ORTHO05D010601 6.1e-38 162.2 237 46.4
arahy.Tifrunner.gnm1.ann1.C7LIDW Arachis hypogaea HOM05D008415 ORTHO05D010601 1.8e-37 160.6 255 44.7
Lalb_Chr19g0137361 Lupinus albus HOM05D008415 ORTHO05D010601 3.1e-37 159.8 244 43.9
arahy.Tifrunner.gnm1.ann1.TY33PY Arachis hypogaea HOM05D008415 ORTHO05D010601 2.0e-36 157.1 255 43.1
HanXRQChr14g0445691 Helianthus annuus HOM05D008415 ORTHO05D010601 3.4e-36 156.4 248 42.3
Haze_23892 Corylus avellana HOM05D008415 ORTHO05D010601 1.7e-35 154.1 241 43.6
CSS0005479 Camellia sinensis var. sinensis HOM05D008415 ORTHO05D010601 1.5e-31 141.0 201 45.8
unitig_46.g18232 Utricularia gibba HOM05D008415 ORTHO05D010601 2.5e-31 140.2 236 41.1
CANSAT54G1687 Cannabis sativa HOM05D008415 ORTHO05D010601 2.1e-30 137.1 256 40.2
Hma1.2p1_2585F.1_g324920 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 8.0e-30 135.2 444 29.3
Hma1.2p1_1931F.1_g307990 Hydrangea macrophylla HOM05D008415 ORTHO05D010601 1.1e-29 134.8 444 29.3
Ca_19250_v3 Cicer arietinum L. HOM05D008415 ORTHO05D010601 5.2e-29 132.5 111 56.8
VMungo1127G1728 Vigna mungo HOM05D008415 ORTHO05D010601 1.3e-27 127.9 209 40.7
Medtr4g060050 Medicago truncatula HOM05D008415 ORTHO05D010601 1.3e-24 117.9 187 43.9
Aqoxy2G01080 Aquilegia oxysepala HOM05D008415 ORTHO05D010601 3.1e-21 106.7 92 56.5
CiPaw.14G078500 Carya illinoinensis HOM05D008415 ORTHO05D010601 3.1e-21 106.7 104 58.7
Phvul.011G073700 Phaseolus vulgaris HOM05D008415 ORTHO05D010601 8.9e-21 105.1 94 54.3
Potri.016G129250 Populus trichocarpa HOM05D008415 ORTHO05D010601 4.9e-19 99.4 226 36.3
Cc07_g02980 Coffea canephora HOM05D008415 ORTHO05D010601 6.4e-19 99.0 81 58.0
TPR.G15532 Trifolium pratense HOM05D008415 ORTHO05D010601 3.0e-16 90.1 118 47.5
Os03g0288900 Oryza sativa ssp. japonica HOM05D008415 ORTHO05D010601 3.6e-14 83.2 129 40.3
Gohir.D12G178800 Gossypium hirsutum HOM05D005535 ORTHO05D006753 1.2e-12 78.2 123 37.4
Gorai.008G191600 Gossypium raimondii HOM05D005535 ORTHO05D006753 2.0e-12 77.4 123 36.6
Nitab4.5_0004931g0020 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.2e-11 73.9 187 34.2
SEGI_01090 Sequoiadendron giganteum HOM05D005535 ORTHO05D006753 2.2e-11 73.9 255 29.8
HPP92_024074 Vanilla planifolia HOM05D005535 ORTHO05D006753 2.2e-11 73.9 180 32.8
TPR.G27376 Trifolium pratense HOM05D005535 ORTHO05D006753 2.9e-11 73.6 185 31.4
Hma1.2p1_0104F.1_g050150 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 3.8e-11 73.2 91 40.7
Lj4g0008602 Lotus japonicus HOM05D005535 ORTHO05D006753 4.9e-11 72.8 80 42.5
Medtr4g108100 Medicago truncatula HOM05D005535 ORTHO05D006753 4.9e-11 72.8 240 29.6
Phvul.003G191800 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 4.9e-11 72.8 89 46.1
Glyma.05G028700 Glycine max HOM05D005535 ORTHO05D006753 6.4e-11 72.4 208 30.8
CSS0007804 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 1.1e-10 71.6 180 29.4
MBI01_g12912_MAGBIO Magnolia biondii HOM05D005535 ORTHO05D006753 1.4e-10 71.2 200 30.5
CSS0007998 Camellia sinensis var. sinensis HOM05D005535 ORTHO05D006753 2.4e-10 70.5 192 30.7
Peaxi162Scf00009g00219 Petunia axillaris HOM05D005535 ORTHO05D006753 2.4e-10 70.5 183 32.8
Duzib084G1387 Durio zibethinus HOM05D005535 ORTHO05D006753 7.1e-10 68.9 182 33.0
Ca_21840_v3 Cicer arietinum L. HOM05D005535 ORTHO05D006753 9.3e-10 68.6 212 30.7
PGSC0003DMG400033073 Solanum tuberosum HOM05D005535 ORTHO05D006753 9.3e-10 68.6 92 38.0
Actinidia34981 Actinidia chinensis HOM05D005535 ORTHO05D006753 1.2e-09 68.2 211 28.4
Hma1.2p1_1617F.1_g293810 Hydrangea macrophylla HOM05D005535 ORTHO05D006753 1.6e-09 67.8 186 33.9
Lalb_Chr13g0303381 Lupinus albus HOM05D005535 ORTHO05D006753 1.6e-09 67.8 212 29.7
QL10p015851 Quercus lobata HOM05D005535 ORTHO05D006753 1.6e-09 67.8 179 31.3
arahy.Tifrunner.gnm1.ann1.WGP01G Arachis hypogaea HOM05D005535 ORTHO05D006753 2.1e-09 67.4 181 32.6
CAN.G628.33 Capsicum annuum HOM05D005535 ORTHO05D006753 2.1e-09 67.4 117 32.5
Duzib205G0302 Durio zibethinus HOM05D005535 ORTHO05D006753 2.1e-09 67.4 199 29.6
Nitab4.5_0000269g0110 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.1e-09 67.4 197 32.0
arahy.Tifrunner.gnm1.ann1.G5WMYY Arachis hypogaea HOM05D005535 ORTHO05D006753 2.7e-09 67.0 180 33.3
EL10Ac5g10956 Beta vulgaris HOM05D005535 ORTHO05D006753 2.7e-09 67.0 216 27.3
PSO832G1146 Papaver somniferum HOM05D005535 ORTHO05D006753 2.7e-09 67.0 197 31.5
Peaxi162Scf00013g00129 Petunia axillaris HOM05D005535 ORTHO05D006753 3.5e-09 66.6 159 34.6
Psat4g052400 Pisum sativum HOM05D005535 ORTHO05D006753 3.5e-09 66.6 196 31.6
TAR371G0260 Trochodendron aralioides HOM05D005535 ORTHO05D006753 3.5e-09 66.6 212 31.6
Migut.I00138 Erythranthe guttata HOM05D005535 ORTHO05D006753 4.6e-09 66.2 224 30.4
PGSC0003DMG401018143 Solanum tuberosum HOM05D005535 ORTHO05D006753 4.6e-09 66.2 182 32.4
Glyma.17G098100 Glycine max HOM05D005535 ORTHO05D006753 6.0e-09 65.9 212 29.7
Lj9A460T58 Lonicera japonica HOM05D005535 ORTHO05D006753 6.0e-09 65.9 194 28.9
Oeu006178.3 Olea europaea HOM05D005535 ORTHO05D006753 6.0e-09 65.9 203 30.0
Actinidia19054 Actinidia chinensis HOM05D005535 ORTHO05D006753 7.8e-09 65.5 180 28.9
AUR62021726 Chenopodium quinoa HOM05D005535 ORTHO05D006753 7.8e-09 65.5 202 28.7
Dinv19929 Davidia involucrata HOM05D005535 ORTHO05D006753 7.8e-09 65.5 204 27.9
Atru.chr9.2302 Acer truncatum HOM05D005535 ORTHO05D006753 1.0e-08 65.1 192 30.7
CANSAT80G1786 Cannabis sativa HOM05D005535 ORTHO05D006753 1.0e-08 65.1 193 33.7
AUR62008371 Chenopodium quinoa HOM05D005535 ORTHO05D006753 1.0e-08 65.1 202 28.2
Gohir.A12G175600 Gossypium hirsutum HOM05D005535 ORTHO05D006753 1.0e-08 65.1 190 32.1
Lalb_Chr12g0196771 Lupinus albus HOM05D005535 ORTHO05D006753 1.0e-08 65.1 197 28.4
Solyc03g113090.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 1.0e-08 65.1 182 31.9
SGA_v2.0_scaffold56G20044 Striga asiatica HOM05D005535 ORTHO05D006753 1.0e-08 65.1 167 33.5
Lj5A114T27 Lonicera japonica HOM05D005535 ORTHO05D006753 1.7e-08 64.3 149 30.9
Rhsim08G0158400 Rhododendron simsii HOM05D005535 ORTHO05D006753 1.7e-08 64.3 215 31.6
Sc10g0009960 Simmondsia chinensis HOM05D005535 ORTHO05D006753 1.7e-08 64.3 181 30.4
Sabra15G0089300 Salix brachista HOM05D005535 ORTHO05D006753 2.3e-08 63.9 194 30.4
Sopen03g032160 Solanum pennellii HOM05D005535 ORTHO05D006753 2.3e-08 63.9 182 31.3
VMungo1215G1657 Vigna mungo HOM05D005535 ORTHO05D006753 2.3e-08 63.9 192 28.1
COL.COLO4_14041 Corchorus olitorius HOM05D005535 ORTHO05D006753 3.0e-08 63.5 202 29.7
Potri.015G063700 Populus trichocarpa HOM05D005535 ORTHO05D006753 3.0e-08 63.5 191 31.4
Ah.02g113290 Amaranthus hybridus HOM05D005535 ORTHO05D006753 3.9e-08 63.2 193 32.1
vmacro16564 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 3.9e-08 63.2 189 29.1
MSTRG.11394 Avicennia marina HOM05D005535 ORTHO05D006753 5.1e-08 62.8 191 36.1
Cfa018977 Carpinus fangiana HOM05D005535 ORTHO05D006753 5.1e-08 62.8 179 31.3
CsaV3_1G002190 Cucumis sativus L. HOM05D005535 ORTHO05D006753 5.1e-08 62.8 215 30.7
PSO017G0680 Papaver somniferum HOM05D005535 ORTHO05D006753 5.1e-08 62.8 135 33.3
Thecc.03G081300 Theobroma cacao HOM05D005535 ORTHO05D006753 5.1e-08 62.8 169 33.7
Dinv38677 Davidia involucrata HOM05D005535 ORTHO05D006753 6.6e-08 62.4 183 32.8
Lj1g0015301 Lotus japonicus HOM05D005535 ORTHO05D006753 6.6e-08 62.4 203 30.0
Nn3g17153 Nelumbo nucifera HOM05D005535 ORTHO05D006753 6.6e-08 62.4 201 28.4
Nitab4.5_0000785g0140 Nicotiana tabacum HOM05D005535 ORTHO05D006753 6.6e-08 62.4 176 31.2
Oeu022201.1 Olea europaea HOM05D005535 ORTHO05D006753 6.6e-08 62.4 173 31.8
PSO591G0334 Papaver somniferum HOM05D005535 ORTHO05D006753 6.6e-08 62.4 197 29.4
Actinidia04914 Actinidia chinensis HOM05D005535 ORTHO05D006753 8.7e-08 62.0 193 30.1
FAN13G1299 Fragaria x ananassa HOM05D005535 ORTHO05D006753 8.7e-08 62.0 97 43.3
MELO3C017158.2 Cucumis melo HOM05D005535 ORTHO05D006753 1.5e-07 61.2 146 34.9
Aqoxy3G03311 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 1.9e-07 60.8 202 31.7
Phvul.009G189600 Phaseolus vulgaris HOM05D005535 ORTHO05D006753 1.9e-07 60.8 132 31.8
Nitab4.5_0004785g0010 Nicotiana tabacum HOM05D005535 ORTHO05D006753 2.5e-07 60.5 182 30.2
TAR629G1161 Trochodendron aralioides HOM05D005535 ORTHO05D006753 2.5e-07 60.5 197 28.4
CiPaw.12G015700 Carya illinoinensis HOM05D005535 ORTHO05D006753 3.3e-07 60.1 195 29.7
Eucgr.B00441 Eucalyptus grandis HOM05D005535 ORTHO05D006753 3.3e-07 60.1 209 31.6
SGA_v2.0_scaffold162G37926 Striga asiatica HOM05D005535 ORTHO05D006753 3.3e-07 60.1 202 31.2
Aqoxy3G00718 Aquilegia oxysepala HOM05D005535 ORTHO05D006753 4.3e-07 59.7 217 29.5
Thecc.09G258600 Theobroma cacao HOM05D008415 ORTHO05D010601 4.3e-07 59.7 178 30.9
TWI60G0583 Tripterygium wilfordii HOM05D005535 ORTHO05D006753 4.3e-07 59.7 203 31.5
vmacro17524 Vaccinium macrocarpon HOM05D005535 ORTHO05D006753 4.3e-07 59.7 190 31.6
ATR1120G167 Amborella trichopoda HOM05D005535 ORTHO05D006753 7.3e-07 58.9 224 26.3
Ciclev10020848m.g Citrus clementina HOM05D005535 ORTHO05D006753 7.3e-07 58.9 204 29.4
Manes.06G095400 Manihot esculenta HOM05D005535 ORTHO05D006753 7.3e-07 58.9 192 29.7
Rhsim12G0158200 Rhododendron simsii HOM05D005535 ORTHO05D006753 7.3e-07 58.9 180 31.7
RcHm_v2.0_Chr7g0180761 Rosa chinensis HOM05D005535 ORTHO05D006753 9.6e-07 58.5 200 31.0
Solyc06g070970.3 Solanum lycopersicum HOM05D005535 ORTHO05D006753 9.6e-07 58.5 219 32.0
AL8G39440 Arabidopsis lyrata HOM05D005535 ORTHO05D006753 1.6e-06 57.8 220 29.5
A06p29250 Brassica napus HOM05D005535 ORTHO05D006753 1.6e-06 57.8 171 29.2
SalBow5G2281 Salvia bowleyana HOM05D005535 ORTHO05D006753 1.6e-06 57.8 199 29.1
Sopen06g027240 Solanum pennellii HOM05D005535 ORTHO05D006753 1.6e-06 57.8 218 28.9
Cpa.g.sc17.224 Carica papaya HOM05D005535 ORTHO05D006753 2.1e-06 57.4 201 25.4
ClCG06G016340 Citrullus lanatus HOM05D005535 ORTHO05D006753 2.1e-06 57.4 193 30.1
SalBow5G0107 Salvia bowleyana HOM05D005535 ORTHO05D006753 2.1e-06 57.4 199 29.1
VMungo1309G2126 Vigna mungo HOM05D005535 ORTHO05D006753 2.1e-06 57.4 201 26.4
Sed0009946 Sechium edule HOM05D005535 ORTHO05D006753 2.8e-06 57.0 201 28.9
Hund09363 Selenicereus undatus HOM05D005535 ORTHO05D006753 2.8e-06 57.0 201 30.8
Actinidia37646 Actinidia chinensis HOM05D005535 ORTHO05D006753 3.6e-06 56.6 179 31.3
Thhalv10004313m.g Eutrema salsugineum HOM05D005535 ORTHO05D006753 3.6e-06 56.6 284 26.1
Glyma.06G191000 Glycine max HOM05D005535 ORTHO05D006753 3.6e-06 56.6 187 27.8
PSO478G1818 Papaver somniferum HOM05D005535 ORTHO05D006753 3.6e-06 56.6 190 29.5
Glyma.04G173200 Glycine max HOM05D005535 ORTHO05D006753 4.8e-06 56.2 165 27.3
Haze_07363 Corylus avellana HOM05D005535 ORTHO05D006753 6.2e-06 55.8 179 30.2
unitig_26.g9639 Utricularia gibba HOM05D005535 ORTHO05D006753 8.1e-06 55.5 159 30.2


User provided reference genes

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