Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g069170.2 Solanum lycopersicum HOM05D006884 ORTHO05D008604 0.0e+00 1332.4 686 100.0
Sopen11g027910 Solanum pennellii HOM05D006884 ORTHO05D008604 0.0e+00 1310.4 686 98.3
PGSC0003DMG400008066 Solanum tuberosum HOM05D006884 ORTHO05D008604 0.0e+00 1243.4 723 90.0
Peaxi162Scf00351g00322 Petunia axillaris HOM05D006884 ORTHO05D008604 0.0e+00 1080.1 699 80.7
Nitab4.5_0000999g0100 Nicotiana tabacum HOM05D006884 ORTHO05D008604 2.7e-310 1068.1 727 78.0
Nitab4.5_0002186g0020 Nicotiana tabacum HOM05D006884 ORTHO05D008604 1.6e-302 1042.3 640 85.0
CAN.G631.5 Capsicum annuum HOM05D006884 ORTHO05D008604 2.3e-293 1011.9 624 84.5
Hma1.2p1_0071F.1_g038150 Hydrangea macrophylla HOM05D006884 ORTHO05D008604 1.5e-263 912.9 683 69.5
CSS0004159 Camellia sinensis var. sinensis HOM05D006884 ORTHO05D008604 1.4e-258 896.3 676 69.1
Oeu005901.1 Olea europaea HOM05D006884 ORTHO05D008604 4.1e-258 894.8 700 68.0
Actinidia07119 Actinidia chinensis HOM05D006884 ORTHO05D008604 2.5e-255 885.6 683 67.5
GSVIVG01025156001 Vitis vinifera HOM05D006884 ORTHO05D008604 4.3e-255 884.8 683 66.9
Cc01_g11430 Coffea canephora HOM05D006884 ORTHO05D008604 2.8e-254 882.1 677 67.4
COL.COLO4_05186 Corchorus olitorius HOM05D006884 ORTHO05D008604 1.0e-253 880.2 681 67.3
Lj2C1032T7 Lonicera japonica HOM05D006884 ORTHO05D008604 1.0e-253 880.2 707 66.5
Duzib168G2304 Durio zibethinus HOM05D006884 ORTHO05D008604 2.6e-252 875.5 680 67.2
QL01p023227 Quercus lobata HOM05D006884 ORTHO05D008604 9.8e-252 873.6 678 67.1
Cfa011353 Carpinus fangiana HOM05D006884 ORTHO05D008604 3.7e-251 871.7 684 67.1
Atru.chr3.3680 Acer truncatum HOM05D006884 ORTHO05D008604 2.8e-246 855.5 680 64.9
Prupe.6G097500 Prunus persica HOM05D006884 ORTHO05D008604 1.1e-245 853.6 676 65.5
MSTRG.12324 Avicennia marina HOM05D006884 ORTHO05D008604 2.3e-245 852.4 685 65.3
vmacro03180 Vaccinium macrocarpon HOM05D006884 ORTHO05D008604 4.0e-245 851.7 681 66.1
Manes.04G024400 Manihot esculenta HOM05D006884 ORTHO05D008604 8.9e-245 850.5 688 64.8
CANSAT54G0393 Cannabis sativa HOM05D006884 ORTHO05D008604 7.5e-244 847.4 682 64.5
Haze_23897 Corylus avellana HOM05D006884 ORTHO05D008604 7.5e-244 847.4 728 63.2
DCAR_018827 Daucus carota HOM05D006884 ORTHO05D008604 4.9e-243 844.7 672 65.5
TAR369G0310 Trochodendron aralioides HOM05D006884 ORTHO05D008604 8.3e-243 844.0 680 64.3
CiPaw.13G108400 Carya illinoinensis HOM05D006884 ORTHO05D008604 4.1e-242 841.6 676 63.6
Migut.N02612 Erythranthe guttata HOM05D006884 ORTHO05D008604 7.1e-242 840.9 686 64.1
Gorai.013G255800 Gossypium raimondii HOM05D006884 ORTHO05D008604 1.0e-240 837.0 685 63.8
Gohir.D13G225000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 3.9e-240 835.1 685 63.8
Gohir.A13G221000 Gossypium hirsutum HOM05D006884 ORTHO05D008604 7.3e-239 830.9 685 63.6
Eucgr.J00944 Eucalyptus grandis HOM05D006884 ORTHO05D008604 3.1e-237 825.5 682 62.0
PGR119G0543 Punica granatum HOM05D006884 ORTHO05D008604 3.1e-237 825.5 678 62.4
Potri.009G014900 Populus trichocarpa HOM05D006884 ORTHO05D008604 9.9e-236 820.5 673 63.7
TWI38G0581 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 2.9e-235 818.9 689 62.7
HanXRQChr07g0197411 Helianthus annuus HOM05D006884 ORTHO05D008604 3.8e-235 818.5 684 62.9
RcHm_v2.0_Chr5g0060051 Rosa chinensis HOM05D006884 ORTHO05D008604 7.8e-233 810.8 681 63.0
ClCG03G002300 Citrullus lanatus HOM05D006884 ORTHO05D008604 2.3e-232 809.3 685 61.5
TWI38G2405 Tripterygium wilfordii HOM05D006884 ORTHO05D008604 4.7e-230 801.6 689 62.1
PSO063G0254 Papaver somniferum HOM05D006884 ORTHO05D008604 5.2e-229 798.1 685 62.6
Aqoxy4G03234 Aquilegia oxysepala HOM05D006884 ORTHO05D008604 7.6e-228 794.3 688 61.3
ECA238G4524 Erigeron canadensis HOM05D006884 ORTHO05D008604 1.1e-226 790.4 667 61.5
MELO3C005036.2 Cucumis melo HOM05D006884 ORTHO05D008604 2.4e-226 789.3 673 60.9
Cpa.g.sc139.78 Carica papaya HOM05D006884 ORTHO05D008604 3.2e-226 788.9 597 67.7
Ciclev10027944m.g Citrus clementina HOM05D006884 ORTHO05D008604 5.4e-226 788.1 669 61.3
arahy.Tifrunner.gnm1.ann1.AY6ICH Arachis hypogaea HOM05D006884 ORTHO05D008604 9.3e-226 787.3 677 60.7
FvH4_3g32920 Fragaria vesca HOM05D006884 ORTHO05D008604 1.2e-225 786.9 675 61.3
FAN11G3181 Fragaria x ananassa HOM05D006884 ORTHO05D008604 1.7e-224 783.1 675 61.5
Lalb_Chr01g0004191 Lupinus albus HOM05D006884 ORTHO05D008604 5.1e-224 781.6 677 60.4
SalBow3G0672 Salvia bowleyana HOM05D006884 ORTHO05D008604 3.3e-223 778.9 685 61.6
Glyma.11G154214 Glycine max HOM05D006884 ORTHO05D008604 4.3e-223 778.5 685 59.7
VMungo1127G0767 Vigna mungo HOM05D006884 ORTHO05D008604 2.8e-222 775.8 681 60.1
Lj3g0026527 Lotus japonicus HOM05D006884 ORTHO05D008604 3.6e-222 775.4 672 60.6
Sed0010984 Sechium edule HOM05D006884 ORTHO05D008604 6.2e-222 774.6 682 59.1
Medtr4g060500 Medicago truncatula HOM05D006884 ORTHO05D008604 2.4e-221 772.7 680 60.0
Psat7g223440 Pisum sativum HOM05D006884 ORTHO05D008604 2.6e-220 769.2 676 60.5
FAN25G2544 Fragaria x ananassa HOM05D006884 ORTHO05D008604 3.4e-220 768.8 680 60.3
Phvul.011G073400 Phaseolus vulgaris HOM05D006884 ORTHO05D008604 8.4e-219 764.2 676 60.1
Lsat_1_v5_gn_2_97900 Lactuca sativa HOM05D006884 ORTHO05D008604 1.2e-217 760.4 676 58.9
SGA_v2.0_scaffold2G00907 Striga asiatica HOM05D006884 ORTHO05D008604 1.2e-217 760.4 637 63.0
Sc06g0010010 Simmondsia chinensis HOM05D006884 ORTHO05D008604 1.0e-216 757.3 678 59.6
TPR.G15554 Trifolium pratense HOM05D006884 ORTHO05D008604 3.0e-216 755.7 677 59.4
CARHR007750 Cardamine hirsuta HOM05D006884 ORTHO05D008604 1.8e-213 746.5 683 57.8
Carub.0001s0732 Capsella rubella HOM05D006884 ORTHO05D008604 1.2e-212 743.8 682 57.6
BraA06t23709Z Brassica rapa HOM05D006884 ORTHO05D008604 2.2e-211 739.6 678 58.1
AT1G07970 Arabidopsis thaliana HOM05D006884 ORTHO05D008604 2.9e-211 739.2 682 57.6
Thhalv10006976m.g Eutrema salsugineum HOM05D006884 ORTHO05D008604 2.9e-211 739.2 679 57.6
A06p05030 Brassica napus HOM05D006884 ORTHO05D008604 4.9e-211 738.4 678 58.0
C05p05970 Brassica napus HOM05D006884 ORTHO05D008604 3.5e-209 732.3 680 58.1
Hund10472 Selenicereus undatus HOM05D006884 ORTHO05D008604 6.0e-209 731.5 673 58.7
BolC5t29358H Brassica oleracea HOM05D003203 ORTHO05D003526 7.9e-209 731.1 680 57.9
THA.LOC104815748 Tarenaya hassleriana HOM05D006884 ORTHO05D008604 2.3e-208 729.6 687 56.9
PSO339G1719 Papaver somniferum HOM05D006884 ORTHO05D008604 3.1e-205 719.2 595 63.7
Thecc.09G259000 Theobroma cacao HOM05D006884 ORTHO05D008604 5.8e-204 714.9 483 73.7
AL1G18300 Arabidopsis lyrata HOM05D006884 ORTHO05D008604 1.0e-203 714.1 680 56.6
ATR0759G051 Amborella trichopoda HOM05D006884 ORTHO05D008604 1.3e-200 703.7 679 57.9
arahy.Tifrunner.gnm1.ann1.H1W27A Arachis hypogaea HOM05D006884 ORTHO05D008604 1.3e-200 703.7 601 61.4
BcaB02g06701 Brassica carinata HOM05D006884 ORTHO05D008604 1.5e-199 700.3 664 56.9
Aa31LG8G13130 Aethionema arabicum HOM05D006884 ORTHO05D008604 6.3e-198 694.9 676 55.2
AUR62025009 Chenopodium quinoa HOM05D006884 ORTHO05D008604 8.5e-195 684.5 681 55.4
BcaC05g24709 Brassica carinata HOM05D006884 ORTHO05D008604 4.2e-194 682.2 683 55.1
Ca_19247_v3 Cicer arietinum L. HOM05D006884 ORTHO05D008604 4.2e-194 682.2 680 55.6
MBI14_g07928_MAGBIO Magnolia biondii HOM05D006884 ORTHO05D008604 1.8e-192 676.8 609 59.8
Sabra09G0009400 Salix brachista HOM05D006884 ORTHO05D008604 1.8e-189 666.8 525 65.1
AUR62006527 Chenopodium quinoa HOM05D006884 ORTHO05D008604 5.9e-188 661.8 674 54.0
SEGI_12216 Sequoiadendron giganteum HOM05D006884 ORTHO05D008604 1.1e-183 647.5 713 51.9
Os03g0288800 Oryza sativa ssp. japonica HOM05D006884 ORTHO05D008604 2.5e-178 629.8 687 52.1
HPP92_025089 Vanilla planifolia HOM05D006884 ORTHO05D008604 9.4e-178 627.9 691 52.7
CsaV3_1G012990 Cucumis sativus L. HOM05D006884 ORTHO05D008604 7.9e-177 624.8 589 57.2
Zm00001eb397080 Zea mays HOM05D006884 ORTHO05D008604 3.9e-176 622.5 690 50.4
CDE09G0273 Ceratophyllum demersum HOM05D006884 ORTHO05D008604 1.7e-166 590.5 645 51.0
Rhsim08G0043200 Rhododendron simsii HOM05D006884 ORTHO05D008604 3.0e-160 569.7 451 64.5
Sp4g05030 Schrenkiella parvula HOM05D006884 ORTHO05D008604 2.2e-158 563.5 706 48.2
unitig_61.g26171 Utricularia gibba HOM05D006884 ORTHO05D008604 8.3e-150 535.0 620 50.2
Mapoly0043s0112 Marchantia polymorpha HOM05D006884 ORTHO05D008604 5.4e-141 505.8 704 43.9
SMO364G0331 Selaginella moellendorffii HOM05D006884 ORTHO05D008604 7.8e-132 475.3 482 52.3
Pp3c12_22070 Physcomitrium patens HOM05D006884 ORTHO05D008604 6.6e-131 472.2 702 44.2
Actinidia24083 Actinidia chinensis HOM05D006884 ORTHO05D008604 3.3e-130 469.9 301 73.4
arahy.Tifrunner.gnm1.ann1.REDW7M Arachis hypogaea HOM05D006884 ORTHO05D008604 8.7e-115 418.7 278 70.1
BcaB07g34161 Brassica carinata HOM05D006884 ORTHO05D008604 4.4e-111 406.4 357 56.0
Glyma.12G071233 Glycine max HOM05D006884 ORTHO05D008604 2.2e-70 271.2 218 63.3
Actinidia24084 Actinidia chinensis HOM05D006884 ORTHO05D008604 7.9e-68 262.7 310 53.2
Nn1g02077 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.1e-36 158.3 109 68.8
Nn1g02428 Nelumbo nucifera HOM05D006884 ORTHO05D008604 2.8e-36 157.9 97 75.3
Nn3g17897 Nelumbo nucifera HOM05D006884 ORTHO05D008604 6.8e-35 153.3 109 66.1
SEGI_34075 Sequoiadendron giganteum HOM05D000114 ORTHO05D008604 3.4e-34 151.0 462 31.6
Nn4g22222 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.7e-33 147.5 105 65.7
Nn4g22225 Nelumbo nucifera HOM05D006884 ORTHO05D008604 1.7e-25 122.1 102 58.8
Nn3g19002 Nelumbo nucifera HOM05D005115 ORTHO05D005703 2.4e-24 118.2 89 64.0
Nitab4.5_0002186g0030 Nicotiana tabacum HOM05D006884 ORTHO05D008604 9.8e-18 96.3 49 91.8
Glyma.12G071167 Glycine max HOM05D006884 ORTHO05D008604 4.9e-17 94.0 200 36.5
Cre12.g555200 Chlamydomonas reinhardtii HOM05D006884 ORTHO05D008604 3.3e-13 81.3 490 22.7
Aa31LG3G16570 Aethionema arabicum HOM05D006884 ORTHO05D008604 8.1e-12 76.6 183 30.6
Nn1g05254 Nelumbo nucifera HOM05D006884 ORTHO05D008604 3.1e-11 74.7 62 58.1
Nn1g03843 Nelumbo nucifera HOM05D006884 ORTHO05D008604 6.0e-07 60.5 51 54.9


User provided reference genes

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