Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g068680.2 Solanum lycopersicum HOM05D005386 ORTHO05D006981 3.7e-177 624.8 319 100.0
Sopen11g027400 Solanum pennellii HOM05D005386 ORTHO05D006981 1.3e-174 616.3 319 98.4
Nitab4.5_0000731g0080 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.0e-134 483.8 318 79.6
Nitab4.5_0008177g0060 Nicotiana tabacum HOM05D005386 ORTHO05D006981 1.0e-134 483.8 318 79.2
Peaxi162Scf00224g00218 Petunia axillaris HOM05D005386 ORTHO05D006981 3.0e-126 455.7 291 79.7
Dinv08924 Davidia involucrata HOM05D005386 ORTHO05D006981 3.8e-105 385.6 287 69.0
GSVIVG01036080001 Vitis vinifera HOM05D005386 ORTHO05D006981 6.0e-103 378.3 314 64.6
Cc01_g08820 Coffea canephora HOM05D005386 ORTHO05D006981 1.1e-101 374.0 303 65.0
CSS0011344 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 6.2e-100 368.2 298 65.1
CSS0028109 Camellia sinensis var. sinensis HOM05D005386 ORTHO05D006981 6.2e-100 368.2 298 65.1
MSTRG.18771 Avicennia marina HOM05D005386 ORTHO05D006981 2.4e-99 366.3 313 62.3
QL01p011847 Quercus lobata HOM05D005386 ORTHO05D006981 2.2e-97 359.8 304 64.1
TAR633G0448 Trochodendron aralioides HOM05D005386 ORTHO05D006981 6.5e-97 358.2 310 60.6
DCAR_022894 Daucus carota HOM05D005386 ORTHO05D006981 1.4e-96 357.1 303 61.1
Ciclev10028837m.g Citrus clementina HOM05D005386 ORTHO05D006981 1.9e-96 356.7 303 61.7
COL.COLO4_34005 Corchorus olitorius HOM05D005386 ORTHO05D006981 3.2e-96 355.9 307 62.5
Migut.D02364 Erythranthe guttata HOM05D005386 ORTHO05D006981 3.2e-96 355.9 311 62.7
TWI31G0673 Tripterygium wilfordii HOM05D005386 ORTHO05D006981 7.1e-96 354.8 293 62.5
Lj1A257T31 Lonicera japonica HOM05D005386 ORTHO05D006981 6.0e-95 351.7 266 67.3
Hma1.2p1_0319F.1_g123920 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 7.9e-95 351.3 291 63.6
CiPaw.14G098000 Carya illinoinensis HOM05D005386 ORTHO05D006981 1.1e-93 347.4 286 64.0
Gorai.009G084000 Gossypium raimondii HOM05D005386 ORTHO05D006981 3.3e-93 345.9 301 61.5
Atru.chr3.3168 Acer truncatum HOM05D005386 ORTHO05D006981 4.3e-93 345.5 288 62.5
Haze_23346 Corylus avellana HOM05D005386 ORTHO05D006981 5.7e-93 345.1 304 62.2
Gohir.D05G082400 Gossypium hirsutum HOM05D005386 ORTHO05D006981 7.4e-93 344.7 301 61.1
Lalb_Chr03g0028241 Lupinus albus HOM05D005386 ORTHO05D006981 1.3e-92 344.0 309 60.2
Cfa009987 Carpinus fangiana HOM05D005386 ORTHO05D006981 2.8e-92 342.8 280 65.0
MD03G1149900 Malus domestica HOM05D005386 ORTHO05D006981 4.8e-92 342.0 302 58.9
PSO339G6531 Papaver somniferum HOM05D005386 ORTHO05D006981 2.4e-91 339.7 284 62.7
EL10Ac9g22916 Beta vulgaris HOM05D005386 ORTHO05D006981 9.0e-91 337.8 305 58.7
Gohir.A05G079500 Gossypium hirsutum HOM05D005386 ORTHO05D006981 9.0e-91 337.8 301 60.5
Prupe.6G135900 Prunus persica HOM05D005386 ORTHO05D006981 9.0e-91 337.8 293 60.4
Manes.04G001400 Manihot esculenta HOM05D005386 ORTHO05D006981 1.5e-90 337.0 300 58.0
Potri.009G160500 Populus trichocarpa HOM05D005386 ORTHO05D006981 1.5e-90 337.0 307 59.9
CANSAT54G1533 Cannabis sativa HOM05D005386 ORTHO05D006981 3.4e-90 335.9 286 61.5
Rhsim01G0203700 Rhododendron simsii HOM05D005386 ORTHO05D006981 2.2e-89 333.2 320 58.4
Eucgr.J00523 Eucalyptus grandis HOM05D005386 ORTHO05D006981 6.5e-89 331.6 294 58.8
PSO384G1357 Papaver somniferum HOM05D005386 ORTHO05D006981 1.9e-88 330.1 293 60.4
Duzib168G0172 Durio zibethinus HOM05D005386 ORTHO05D006981 1.6e-87 327.0 294 59.5
AT5G22340 Arabidopsis thaliana HOM05D005386 ORTHO05D006981 4.6e-87 325.5 317 55.2
Ca_19443_v3 Cicer arietinum L. HOM05D005386 ORTHO05D006981 4.6e-87 325.5 282 61.3
RcHm_v2.0_Chr5g0045261 Rosa chinensis HOM05D005386 ORTHO05D006981 4.6e-87 325.5 294 58.5
Carub.0006s2008 Capsella rubella HOM05D005386 ORTHO05D006981 6.1e-87 325.1 319 55.5
Glyma.11G181300 Glycine max HOM05D005386 ORTHO05D006981 6.1e-87 325.1 286 60.5
THA.LOC104810925 Tarenaya hassleriana HOM05D005386 ORTHO05D006981 7.9e-87 324.7 292 57.2
Psat7g187240 Pisum sativum HOM05D005386 ORTHO05D006981 1.0e-86 324.3 311 57.9
ECA238G0234 Erigeron canadensis HOM05D005386 ORTHO05D006981 1.8e-86 323.6 261 62.1
Nn7g37254 Nelumbo nucifera HOM05D005386 ORTHO05D006981 3.0e-86 322.8 319 53.6
Lsat_1_v5_gn_2_3840 Lactuca sativa HOM05D005386 ORTHO05D006981 3.9e-86 322.4 286 58.7
vmacro14339 Vaccinium macrocarpon HOM05D005386 ORTHO05D006981 5.1e-86 322.0 344 53.5
AL6G33360 Arabidopsis lyrata HOM05D005386 ORTHO05D006981 6.7e-86 321.6 322 56.2
FvH4_2g14080 Fragaria vesca HOM05D005386 ORTHO05D006981 6.7e-86 321.6 297 57.9
TPR.G17201 Trifolium pratense HOM05D005386 ORTHO05D006981 1.9e-85 320.1 289 61.6
Sc06g0008690 Simmondsia chinensis HOM05D005386 ORTHO05D006981 5.7e-85 318.5 298 58.1
A03p10700 Brassica napus HOM05D005386 ORTHO05D006981 2.8e-84 316.2 301 57.5
BolC3t13704H Brassica oleracea HOM05D005386 ORTHO05D006981 2.8e-84 316.2 304 56.9
Thhalv10014124m.g Eutrema salsugineum HOM05D005386 ORTHO05D006981 2.8e-84 316.2 292 56.8
ClCG01G011810 Citrullus lanatus HOM05D005386 ORTHO05D006981 4.8e-84 315.5 272 60.7
Sp6g22900 Schrenkiella parvula HOM05D005386 ORTHO05D006981 4.8e-84 315.5 301 56.8
BraA03t10382Z Brassica rapa HOM05D005386 ORTHO05D006981 1.1e-83 314.3 295 57.3
C03p12310 Brassica napus HOM05D005386 ORTHO05D006981 1.4e-83 313.9 318 54.4
SGA_v2.0_scaffold7G04001 Striga asiatica HOM05D005386 ORTHO05D006981 2.4e-83 313.2 315 58.1
Sed0024067 Sechium edule HOM05D005386 ORTHO05D006981 5.3e-83 312.0 266 61.3
CsaV3_1G015030 Cucumis sativus L. HOM05D005386 ORTHO05D006981 4.5e-82 308.9 294 56.8
Lj3g0020097 Lotus japonicus HOM05D005386 ORTHO05D006981 1.3e-81 307.4 290 58.3
Duzib170G0830 Durio zibethinus HOM05D005386 ORTHO05D006981 2.9e-81 306.2 266 62.0
HanXRQChr06g0183931 Helianthus annuus HOM05D005386 ORTHO05D006981 2.9e-81 306.2 260 60.8
ATR0307G012 Amborella trichopoda HOM05D005386 ORTHO05D006981 4.2e-80 302.4 270 57.4
arahy.Tifrunner.gnm1.ann1.E6G7P2 Arachis hypogaea HOM05D005386 ORTHO05D006981 1.2e-79 300.8 280 57.5
MBI19_g34002_MAGBIO Magnolia biondii HOM05D005386 ORTHO05D006981 1.8e-78 297.0 281 58.0
Medtr4g052500 Medicago truncatula HOM05D005386 ORTHO05D006981 2.3e-78 296.6 297 56.2
Glyma.12G091900 Glycine max HOM05D005386 ORTHO05D006981 3.0e-78 296.2 278 57.9
Actinidia37072 Actinidia chinensis HOM05D005386 ORTHO05D006981 1.5e-77 293.9 297 56.2
Ah.01g001670 Amaranthus hybridus HOM05D005386 ORTHO05D006981 4.3e-77 292.4 278 57.6
FAN20G2771 Fragaria x ananassa HOM05D005386 ORTHO05D006981 5.3e-75 285.4 313 51.4
SEGI_27763 Sequoiadendron giganteum HOM05D005386 ORTHO05D006981 1.3e-73 280.8 278 51.1
BcaB01g04714 Brassica carinata HOM05D005386 ORTHO05D006981 8.5e-73 278.1 298 52.3
PGR119G1266 Punica granatum HOM05D005386 ORTHO05D006981 2.5e-72 276.6 265 60.0
Hund18776 Selenicereus undatus HOM05D005386 ORTHO05D006981 1.4e-70 270.8 381 42.8
Zm00001eb395560 Zea mays HOM05D005386 ORTHO05D006981 1.8e-70 270.4 301 48.8
Os03g0322600 Oryza sativa ssp. japonica HOM05D005386 ORTHO05D006981 2.3e-70 270.0 297 48.8
unitig_736.g22394 Utricularia gibba HOM05D005386 ORTHO05D006981 6.7e-70 268.5 261 55.6
Oeu014472.1 Olea europaea HOM05D005386 ORTHO05D006981 2.6e-69 266.5 161 80.7
BcaC01g06587 Brassica carinata HOM05D005386 ORTHO05D006981 2.8e-68 263.1 335 46.9
MELO3C025590.2 Cucumis melo HOM05D005386 ORTHO05D006981 1.8e-67 260.4 264 55.7
Aqoxy1G00008 Aquilegia oxysepala HOM05D005386 ORTHO05D006981 2.0e-66 256.9 276 50.7
HPP92_001703 Vanilla planifolia HOM05D005386 ORTHO05D006981 1.5e-64 250.8 293 48.5
arahy.Tifrunner.gnm1.ann1.PADK5G Arachis hypogaea HOM05D005386 ORTHO05D006981 2.1e-63 246.9 280 49.6
CDE08G0019 Ceratophyllum demersum HOM05D005386 ORTHO05D006981 2.7e-63 246.5 283 47.7
AUR62015198 Chenopodium quinoa HOM05D005386 ORTHO05D006981 8.8e-62 241.5 275 50.2
Zm00001eb015340 Zea mays HOM05D005386 ORTHO05D006981 3.3e-61 239.6 204 55.9
AUR62017661 Chenopodium quinoa HOM05D005386 ORTHO05D006981 1.3e-60 237.7 279 49.8
FAN24G0713 Fragaria x ananassa HOM05D005386 ORTHO05D006981 5.9e-58 228.8 203 60.6
Cpa.g.sc195.24 Carica papaya HOM05D005386 ORTHO05D006981 1.1e-56 224.6 157 72.6
Zm00001eb285540 Zea mays HOM05D005386 ORTHO05D006981 1.9e-56 223.8 296 43.9
Hma1.2p1_0319F.1_g123910 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 2.1e-55 220.3 152 73.7
Mapoly0094s0013 Marchantia polymorpha HOM05D005386 ORTHO05D006981 4.1e-51 206.1 269 43.5
SalBow6G0611 Salvia bowleyana HOM05D005386 ORTHO05D006981 1.2e-50 204.5 257 49.0
BcaC01g06590 Brassica carinata HOM05D005386 ORTHO05D006981 2.7e-50 203.4 231 49.4
AUR62014970 Chenopodium quinoa HOM05D005386 ORTHO05D006981 2.2e-49 200.3 277 45.1
AagrBONN_evm.TU.Sc2ySwM_228.4159 Anthoceros agrestis HOM05D005386 ORTHO05D006981 2.1e-47 193.7 288 40.6
Aa31LG1G13200 Aethionema arabicum HOM05D005386 ORTHO05D006981 1.0e-46 191.4 222 52.7
FAN15G3687 Fragaria x ananassa HOM05D005386 ORTHO05D006981 1.0e-46 191.4 129 73.6
Phvul.011G096200 Phaseolus vulgaris HOM05D005386 ORTHO05D006981 3.0e-46 189.9 194 53.1
SMO338G0026 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 6.6e-41 172.2 211 46.4
SMO140G0002 Selaginella moellendorffii HOM05D005386 ORTHO05D006981 8.0e-39 165.2 276 38.0
Ciclev10029637m.g Citrus clementina HOM05D005386 ORTHO05D006981 5.2e-38 162.5 105 76.2
TAR633G2192 Trochodendron aralioides HOM05D005386 ORTHO05D006981 3.7e-36 156.4 147 56.5
Pp3c20_23100 Physcomitrium patens HOM05D005386 ORTHO05D006981 2.7e-34 150.2 191 40.8
Ciclev10029895m.g Citrus clementina HOM05D005386 ORTHO05D006981 8.6e-33 145.2 105 70.5
AUR62043809 Chenopodium quinoa HOM05D004271 ORTHO05D006011 5.6e-32 142.5 139 59.0
VMungo1127G0965 Vigna mungo HOM05D005386 ORTHO05D006981 3.1e-30 136.7 143 51.0
Aa31LG1G13190 Aethionema arabicum HOM05D005386 ORTHO05D006981 1.7e-28 131.0 85 72.9
FvH4_2g10370 Fragaria vesca HOM05D005386 ORTHO05D006981 1.7e-28 131.0 129 55.8
VMungo1127G1152 Vigna mungo HOM05D005386 ORTHO05D006981 4.9e-28 129.4 99 69.7
arahy.Tifrunner.gnm1.ann1.M18R9V Arachis hypogaea HOM05D005386 ORTHO05D006981 1.7e-25 120.9 99 64.6
Thecc.09G278700 Theobroma cacao HOM05D005386 ORTHO05D006981 3.9e-25 119.8 183 43.2
CARHR191200 Cardamine hirsuta HOM05D005386 ORTHO05D006981 1.4e-19 101.3 150 40.7
FAN24G3375 Fragaria x ananassa HOM05D005386 ORTHO05D006981 7.8e-18 95.5 145 40.0
arahy.Tifrunner.gnm1.ann1.XDN0DP Arachis hypogaea HOM05D005386 ORTHO05D006981 3.3e-16 90.1 72 66.7
arahy.Tifrunner.gnm1.ann1.J76LRM Arachis hypogaea HOM05D005386 ORTHO05D006981 2.1e-15 87.4 91 57.1
arahy.Tifrunner.gnm1.ann1.TQJ2IB Arachis hypogaea HOM05D005386 ORTHO05D006981 1.7e-12 77.8 82 56.1
AagrBONN_evm.TU.Sc2ySwM_228.3020 Anthoceros agrestis HOM05D006699 ORTHO05D008399 4.1e-11 73.2 160 31.2
Hma1.2p1_0319F.1_g123930 Hydrangea macrophylla HOM05D005386 ORTHO05D006981 1.9e-08 64.3 82 43.9
arahy.Tifrunner.gnm1.ann1.CXSI0G Arachis hypogaea HOM05D000290 ORTHO05D002418 4.3e-08 63.2 56 58.9
arahy.Tifrunner.gnm1.ann1.XD28JK Arachis hypogaea HOM05D005386 ORTHO05D006981 9.6e-08 62.0 66 59.1
MD09G1069600 Malus domestica HOM05D005386 ORTHO05D006981 2.8e-07 60.5 86 41.9
CBR_g22416 Chara braunii HOM05D005386 ORTHO05D006981 4.7e-07 59.7 94 38.3
arahy.Tifrunner.gnm1.ann1.9EB2HI Arachis hypogaea HOM05D005386 ORTHO05D006981 1.1e-06 58.5 60 58.3
Cpa.g.sc195.25 Carica papaya HOM05D005386 ORTHO05D006981 1.1e-06 58.5 57 50.9
Pp3c8_13580 Physcomitrium patens HOM05D006699 ORTHO05D008399 8.9e-06 55.5 167 24.6


User provided reference genes

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