Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g068550.1 Solanum lycopersicum HOM05D006357 ORTHO05D007925 2.3e-102 375.6 189 100.0
Sopen11g027270 Solanum pennellii HOM05D006357 ORTHO05D007925 2.3e-102 375.6 189 100.0
Nitab4.5_0006120g0030 Nicotiana tabacum HOM05D006357 ORTHO05D007925 8.8e-94 347.1 189 91.5
Nitab4.5_0005641g0010 Nicotiana tabacum HOM05D006357 ORTHO05D007925 5.7e-93 344.4 189 91.0
Prupe.6G132700 Prunus persica HOM05D006357 ORTHO05D007925 7.8e-74 280.8 178 74.7
Thecc.09G281200 Theobroma cacao HOM05D006357 ORTHO05D007925 1.3e-73 280.0 178 75.8
Dinv22833 Davidia involucrata HOM05D006357 ORTHO05D007925 1.1e-72 276.9 187 67.9
SalBow3G2384 Salvia bowleyana HOM05D006357 ORTHO05D007925 1.5e-72 276.6 178 75.3
ClCG02G022220 Citrullus lanatus HOM05D006357 ORTHO05D007925 3.3e-72 275.4 176 76.1
MSTRG.12374 Avicennia marina HOM05D006357 ORTHO05D007925 5.6e-72 274.6 178 73.6
CSS0003287 Camellia sinensis var. sinensis HOM05D006357 ORTHO05D007925 7.3e-72 274.2 178 73.0
MD03G1147800 Malus domestica HOM05D006357 ORTHO05D007925 9.5e-72 273.9 178 74.7
Migut.N02483 Erythranthe guttata HOM05D006357 ORTHO05D007925 2.1e-71 272.7 174 75.9
MELO3C014499.2 Cucumis melo HOM05D006357 ORTHO05D007925 2.8e-71 272.3 178 74.7
CsaV3_6G038350 Cucumis sativus L. HOM05D006357 ORTHO05D007925 3.6e-71 271.9 187 72.2
VMungo1127G1055 Vigna mungo HOM05D006357 ORTHO05D007925 3.6e-71 271.9 177 72.3
PGR119G0351 Punica granatum HOM05D006357 ORTHO05D007925 4.7e-71 271.6 181 73.5
arahy.Tifrunner.gnm1.ann1.5186VC Arachis hypogaea HOM05D006357 ORTHO05D007925 1.4e-70 270.0 178 74.2
Ciclev10029363m.g Citrus clementina HOM05D006357 ORTHO05D007925 1.8e-70 269.6 178 73.6
Cc01_g08980 Coffea canephora HOM05D006357 ORTHO05D007925 1.8e-70 269.6 173 75.1
Hma1.2p1_0587F.1_g184180 Hydrangea macrophylla HOM05D006357 ORTHO05D007925 1.8e-70 269.6 178 71.3
Lalb_Chr01g0004891 Lupinus albus HOM05D006357 ORTHO05D007925 2.3e-70 269.2 177 71.8
FvH4_3g25140 Fragaria vesca HOM05D006357 ORTHO05D007925 4.0e-70 268.5 182 73.6
arahy.Tifrunner.gnm1.ann1.JXBE2X Arachis hypogaea HOM05D006357 ORTHO05D007925 5.2e-70 268.1 178 73.6
Glyma.11G182400 Glycine max HOM05D006357 ORTHO05D007925 8.9e-70 267.3 176 72.2
Lj2P966T16 Lonicera japonica HOM05D006357 ORTHO05D007925 1.2e-69 266.9 178 72.5
FAN21G3578 Fragaria x ananassa HOM05D006357 ORTHO05D007925 1.5e-69 266.5 182 73.1
Gohir.D08G016000 Gossypium hirsutum HOM05D006357 ORTHO05D007925 1.5e-69 266.5 178 71.9
Gorai.004G010300 Gossypium raimondii HOM05D006357 ORTHO05D007925 1.5e-69 266.5 178 71.9
Phvul.011G095000 Phaseolus vulgaris HOM05D006357 ORTHO05D007925 2.0e-69 266.2 177 71.8
RcHm_v2.0_Chr5g0046241 Rosa chinensis HOM05D006357 ORTHO05D007925 2.0e-69 266.2 184 70.7
GSVIVG01036107001 Vitis vinifera HOM05D006357 ORTHO05D007925 2.0e-69 266.2 177 71.8
CiPaw.13G134700 Carya illinoinensis HOM05D006357 ORTHO05D007925 3.4e-69 265.4 177 72.9
Duzib150G0376 Durio zibethinus HOM05D006357 ORTHO05D007925 3.4e-69 265.4 177 72.3
A06p22010 Brassica napus HOM05D006357 ORTHO05D007925 4.4e-69 265.0 178 70.8
BraA06t25289Z Brassica rapa HOM05D006357 ORTHO05D007925 4.4e-69 265.0 178 70.8
Gohir.A08G005700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 4.4e-69 265.0 178 71.9
THA.LOC104814785 Tarenaya hassleriana HOM05D006357 ORTHO05D007925 5.8e-69 264.6 177 72.3
Lsat_1_v5_gn_1_59200 Lactuca sativa HOM05D006357 ORTHO05D007925 1.3e-68 263.5 178 68.0
Manes.11G162800 Manihot esculenta HOM05D006357 ORTHO05D007925 1.7e-68 263.1 178 70.2
CANSAT54G2809 Cannabis sativa HOM05D006357 ORTHO05D007925 2.2e-68 262.7 177 71.8
CARHR104480 Cardamine hirsuta HOM05D006357 ORTHO05D007925 2.2e-68 262.7 184 69.6
Rhsim01G0204700 Rhododendron simsii HOM05D006357 ORTHO05D007925 2.2e-68 262.7 176 70.5
Atru.chr3.3206 Acer truncatum HOM05D006357 ORTHO05D007925 2.9e-68 262.3 178 71.3
Cfa010003 Carpinus fangiana HOM05D006357 ORTHO05D007925 2.9e-68 262.3 178 70.8
Ah.08g215640 Amaranthus hybridus HOM05D006357 ORTHO05D007925 3.7e-68 261.9 183 68.9
unitig_699.g19178 Utricularia gibba HOM05D006357 ORTHO05D007925 3.7e-68 261.9 185 69.2
BcaB01g01165 Brassica carinata HOM05D006357 ORTHO05D007925 4.9e-68 261.5 184 69.6
Aqoxy2G01095 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 6.4e-68 261.2 178 69.1
Carub.0005s1011 Capsella rubella HOM05D006357 ORTHO05D007925 6.4e-68 261.2 184 69.6
Sp5g16810 Schrenkiella parvula HOM05D006357 ORTHO05D007925 8.3e-68 260.8 178 69.7
SGA_v2.0_scaffold177G39425 Striga asiatica HOM05D006357 ORTHO05D007925 8.3e-68 260.8 179 70.4
EL10Ac7g15835 Beta vulgaris HOM05D006357 ORTHO05D007925 1.4e-67 260.0 180 68.3
AT3G44380 Arabidopsis thaliana HOM05D006357 ORTHO05D007925 1.9e-67 259.6 184 69.0
Gorai.001G122700 Gossypium raimondii HOM05D006357 ORTHO05D007925 1.9e-67 259.6 187 65.2
Lj3g0017887 Lotus japonicus HOM05D006357 ORTHO05D007925 1.9e-67 259.6 186 67.2
Psat7g187640 Pisum sativum HOM05D006357 ORTHO05D007925 1.9e-67 259.6 180 70.0
Gohir.D07G114400 Gossypium hirsutum HOM05D006357 ORTHO05D007925 2.4e-67 259.2 187 65.2
Atru.chr3.3208 Acer truncatum HOM05D006357 ORTHO05D007925 3.2e-67 258.8 178 69.7
BcaC01g02047 Brassica carinata HOM05D006357 ORTHO05D007925 3.2e-67 258.8 178 69.7
C03p69190 Brassica napus HOM05D006357 ORTHO05D007925 3.2e-67 258.8 178 69.7
BolC3t19173H Brassica oleracea HOM05D006357 ORTHO05D007925 3.2e-67 258.8 178 69.7
TPR.G17225 Trifolium pratense HOM05D006357 ORTHO05D007925 5.4e-67 258.1 184 68.5
TWI75G1708 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 9.2e-67 257.3 182 69.8
Ca_19414_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 1.2e-66 256.9 181 68.5
Thhalv10010749m.g Eutrema salsugineum HOM05D006357 ORTHO05D007925 1.2e-66 256.9 178 69.1
AL5G22540 Arabidopsis lyrata HOM05D006357 ORTHO05D007925 1.6e-66 256.5 184 69.0
Prupe.6G132600 Prunus persica HOM05D006357 ORTHO05D007925 1.6e-66 256.5 179 69.3
HanXRQChr01g0024501 Helianthus annuus HOM05D006357 ORTHO05D007925 2.7e-66 255.8 178 68.0
Gohir.A07G110700 Gossypium hirsutum HOM05D006357 ORTHO05D007925 4.6e-66 255.0 178 67.4
Medtr4g052840 Medicago truncatula HOM05D006357 ORTHO05D007925 6.0e-66 254.6 176 69.3
QL01p012073 Quercus lobata HOM05D006357 ORTHO05D007925 7.8e-66 254.2 176 69.9
Eucgr.J00502 Eucalyptus grandis HOM05D006357 ORTHO05D007925 1.0e-65 253.8 176 69.3
TWI79G0514 Tripterygium wilfordii HOM05D006357 ORTHO05D007925 1.3e-65 253.4 182 68.1
Aa31LG4G13870 Aethionema arabicum HOM05D004825 ORTHO05D005415 1.7e-65 253.1 185 68.1
Actinidia37077 Actinidia chinensis HOM05D006357 ORTHO05D007925 2.3e-65 252.7 178 68.5
PSO339G3266 Papaver somniferum HOM05D006357 ORTHO05D007925 3.9e-65 251.9 181 65.2
PSO801G0234 Papaver somniferum HOM05D006357 ORTHO05D007925 6.6e-65 251.1 181 65.2
QL01p012091 Quercus lobata HOM05D006357 ORTHO05D007925 6.6e-65 251.1 176 69.3
Ca_26666_v3 Cicer arietinum L. HOM05D006357 ORTHO05D007925 8.6e-65 250.8 177 68.4
MD11G1166600 Malus domestica HOM05D006357 ORTHO05D007925 1.9e-64 249.6 176 66.5
Sabra16G0125700 Salix brachista HOM05D006357 ORTHO05D007925 2.5e-64 249.2 179 67.0
TAR633G1946 Trochodendron aralioides HOM05D006357 ORTHO05D007925 5.6e-64 248.1 174 66.1
Sc06g0008780 Simmondsia chinensis HOM05D006357 ORTHO05D007925 7.3e-64 247.7 178 62.9
Potri.001G218400 Populus trichocarpa HOM05D006357 ORTHO05D007925 9.5e-64 247.3 179 65.9
MBI01_g14623_MAGBIO Magnolia biondii HOM05D006357 ORTHO05D007925 2.1e-63 246.1 180 63.9
Sed0020794 Sechium edule HOM05D006357 ORTHO05D007925 5.2e-62 241.5 184 66.3
Haze_23361 Corylus avellana HOM05D006357 ORTHO05D007925 6.8e-62 241.1 164 69.5
Nn6g34850 Nelumbo nucifera HOM05D006357 ORTHO05D007925 1.5e-61 240.0 174 64.4
FvH4_3g25160 Fragaria vesca HOM05D006357 ORTHO05D007925 4.4e-61 238.4 184 64.1
FAN25G2095 Fragaria x ananassa HOM05D006357 ORTHO05D007925 7.5e-61 237.7 184 64.1
PGR102G0344 Punica granatum HOM05D006357 ORTHO05D007925 1.7e-60 236.5 175 66.3
Dinv42541 Davidia involucrata HOM05D006357 ORTHO05D007925 1.9e-59 233.0 163 67.5
FAN11G2870 Fragaria x ananassa HOM05D006357 ORTHO05D007925 4.1e-59 231.9 176 64.8
Aqoxy4G02740 Aquilegia oxysepala HOM05D006357 ORTHO05D007925 2.3e-57 226.1 178 60.7
Lalb_Chr03g0028161 Lupinus albus HOM05D006357 ORTHO05D007925 5.6e-56 221.5 175 60.0
PGSC0003DMG400026335 Solanum tuberosum HOM05D006357 ORTHO05D007925 7.3e-56 221.1 108 100.0
Sc21g0007020 Simmondsia chinensis HOM05D006357 ORTHO05D007925 1.8e-54 216.5 185 57.3
DCAR_006168 Daucus carota HOM05D006357 ORTHO05D007925 3.4e-53 212.2 178 58.4
Nn6g34849 Nelumbo nucifera HOM05D006357 ORTHO05D007925 5.8e-53 211.5 176 57.4
AUR62009745 Chenopodium quinoa HOM05D006357 ORTHO05D007925 8.3e-52 207.6 198 52.5
Ah.15g095880 Amaranthus hybridus HOM05D006357 ORTHO05D007925 1.2e-50 203.8 192 52.1
AUR62036192 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.0e-49 200.7 199 51.3
ECA248G3754 Erigeron canadensis HOM05D006357 ORTHO05D007925 6.6e-49 198.0 139 66.9
PSO384G0917 Papaver somniferum HOM05D006357 ORTHO05D007925 1.2e-47 193.7 154 63.6
PSO339G1489 Papaver somniferum HOM05D006357 ORTHO05D007925 3.6e-47 192.2 154 62.3
AUR62036201 Chenopodium quinoa HOM05D006357 ORTHO05D007925 5.2e-46 188.3 142 63.4
Os08g0558300 Oryza sativa ssp. japonica HOM05D006357 ORTHO05D007925 2.2e-44 183.0 173 52.6
RcHm_v2.0_Chr5g0046191 Rosa chinensis HOM05D006357 ORTHO05D007925 2.1e-39 166.4 118 70.3
AagrBONN_evm.TU.Sc2ySwM_117.3687 Anthoceros agrestis HOM05D006357 ORTHO05D007925 1.2e-37 160.6 187 44.9
Mapoly0079s0020 Marchantia polymorpha HOM05D006357 ORTHO05D007925 8.4e-36 154.5 186 44.6
Cpa.g.sc195.8 Carica papaya HOM05D006357 ORTHO05D007925 2.4e-35 152.9 102 72.5
SMO347G0335 Selaginella moellendorffii HOM05D006357 ORTHO05D007925 2.1e-34 149.8 164 48.2
Pp3c2_16750 Physcomitrium patens HOM05D006357 ORTHO05D007925 1.9e-32 143.3 188 44.7
SEGI_40876 Sequoiadendron giganteum HOM05D006357 ORTHO05D007925 2.5e-32 142.9 175 42.3
ATR0820G064 Amborella trichopoda HOM05D006357 ORTHO05D007925 7.3e-32 141.4 180 42.8
Pp3c21_10640 Physcomitrium patens HOM05D006357 ORTHO05D007925 9.6e-32 141.0 181 42.5
Actinidia35469 Actinidia chinensis HOM05D006357 ORTHO05D007925 3.6e-31 139.0 86 74.4
Pp3c9_9450 Physcomitrium patens HOM05D006357 ORTHO05D007925 2.2e-28 129.8 170 39.4
AUR62036200 Chenopodium quinoa HOM05D006357 ORTHO05D007925 1.4e-27 127.1 95 62.1
ATR0820G202 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.6e-23 113.6 132 46.2
AUR62044742 Chenopodium quinoa HOM05D006357 ORTHO05D007925 4.9e-20 102.1 75 64.0
ATR0820G128 Amborella trichopoda HOM05D006357 ORTHO05D007925 1.3e-15 87.4 84 53.6
Glyma.12G090400 Glycine max HOM05D006357 ORTHO05D007925 2.1e-10 70.1 45 73.3
HPP92_019617 Vanilla planifolia HOM05D003111 ORTHO05D003502 6.7e-09 65.1 156 25.6
HPP92_019623 Vanilla planifolia HOM05D003111 ORTHO05D003502 2.5e-08 63.2 138 27.5
Ciclev10009328m.g Citrus clementina HOM05D003111 ORTHO05D003502 5.7e-08 62.0 161 26.7
PSO782G1457 Papaver somniferum HOM05D003111 ORTHO05D003502 8.2e-07 58.2 146 27.4
PSO063G2693 Papaver somniferum HOM05D003111 ORTHO05D003502 1.4e-06 57.4 115 31.3
MD02G1048400 Malus domestica HOM05D003111 ORTHO05D003502 1.8e-06 57.0 151 25.8
TAR624G0200 Trochodendron aralioides HOM05D003111 ORTHO05D003502 2.4e-06 56.6 137 25.5
A08p07040 Brassica napus HOM05D003111 ORTHO05D003502 4.1e-06 55.8 147 25.9
BraA08t32715Z Brassica rapa HOM05D003111 ORTHO05D003502 4.1e-06 55.8 147 25.9
Carub.0007s2934 Capsella rubella HOM05D003111 ORTHO05D003502 4.1e-06 55.8 147 26.5
Aa31sc99G30 Aethionema arabicum HOM05D003111 ORTHO05D003502 5.3e-06 55.5 122 27.0
HPP92_019041 Vanilla planifolia HOM05D000172 ORTHO05D000273 5.3e-06 55.5 151 27.8
C08p08540 Brassica napus HOM05D003111 ORTHO05D003502 6.9e-06 55.1 147 25.9
BolC8t47693H Brassica oleracea HOM05D003111 ORTHO05D003502 6.9e-06 55.1 147 25.9
CARHR218820 Cardamine hirsuta HOM05D003111 ORTHO05D003502 6.9e-06 55.1 161 26.1


User provided reference genes

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