Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g068490.1 Solanum lycopersicum HOM05D007124 ORTHO05D008980 6.9e-27 123.2 63 100.0
Sopen11g027200 Solanum pennellii HOM05D007124 ORTHO05D008980 6.9e-27 123.2 63 100.0
PGSC0003DMG400026339 Solanum tuberosum HOM05D007124 ORTHO05D008980 7.6e-26 119.8 63 98.4
Nitab4.5_0000755g0100 Nicotiana tabacum HOM05D007124 ORTHO05D008980 2.7e-23 111.3 64 92.2
Peaxi162Scf00040g00004 Petunia axillaris HOM05D007124 ORTHO05D008980 3.5e-23 110.9 56 98.2
Nitab4.5_0010969g0020 Nicotiana tabacum HOM05D007124 ORTHO05D008980 4.6e-23 110.5 64 92.2
CSS0008346 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 3.3e-21 104.4 58 89.7
CSS0017817 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 3.3e-21 104.4 58 89.7
Hma1.2p1_1332F.1_g276070 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 5.7e-21 103.6 59 86.4
Hma1.2p1_0036F.1_g023250 Hydrangea macrophylla HOM05D007124 ORTHO05D008980 7.4e-21 103.2 59 86.4
CSS0011277 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 9.6e-21 102.8 58 87.9
CSS0015017 Camellia sinensis var. sinensis HOM05D007124 ORTHO05D008980 9.6e-21 102.8 58 87.9
Lsat_1_v5_gn_5_3160 Lactuca sativa HOM05D007124 ORTHO05D008980 9.6e-21 102.8 63 82.5
Nn1g07252 Nelumbo nucifera HOM05D007124 ORTHO05D008980 3.7e-20 100.9 58 87.9
HanXRQChr08g0233551 Helianthus annuus HOM05D007124 ORTHO05D008980 6.3e-20 100.1 56 83.9
Migut.H01802 Erythranthe guttata HOM05D007124 ORTHO05D008980 1.8e-19 98.6 56 85.7
ATR0317G094 Amborella trichopoda HOM05D007124 ORTHO05D008980 2.4e-19 98.2 56 85.7
Manes.12G070300 Manihot esculenta HOM05D007124 ORTHO05D008980 2.4e-19 98.2 55 83.6
Actinidia32270 Actinidia chinensis HOM05D002089 ORTHO05D002848 3.1e-19 97.8 58 81.0
Oeu013124.1 Olea europaea HOM05D007124 ORTHO05D008980 5.3e-19 97.1 56 83.9
SGA_v2.0_scaffold363G49951 Striga asiatica HOM05D007124 ORTHO05D008980 5.3e-19 97.1 55 85.5
PGR004G2244 Punica granatum HOM05D007124 ORTHO05D008980 9.0e-19 96.3 63 77.8
Sed0025305 Sechium edule HOM05D007124 ORTHO05D008980 1.2e-18 95.9 63 77.8
THA.LOC104811625 Tarenaya hassleriana HOM05D007124 ORTHO05D008980 1.2e-18 95.9 62 74.2
Ciclev10009664m.g Citrus clementina HOM05D007124 ORTHO05D008980 1.5e-18 95.5 63 76.2
Eucgr.F00713 Eucalyptus grandis HOM05D007124 ORTHO05D008980 1.5e-18 95.5 60 81.7
Ciclev10010691m.g Citrus clementina HOM05D007124 ORTHO05D008980 2.6e-18 94.7 63 76.2
QL08p007019 Quercus lobata HOM05D007124 ORTHO05D008980 2.6e-18 94.7 59 78.0
Sp6g17060 Schrenkiella parvula HOM05D007124 ORTHO05D008980 2.6e-18 94.7 59 78.0
TWI39G0219 Tripterygium wilfordii HOM05D007124 ORTHO05D008980 2.6e-18 94.7 60 81.7
DCAR_009645 Daucus carota HOM05D007124 ORTHO05D008980 3.4e-18 94.4 56 82.1
BcaC03g14263 Brassica carinata HOM05D007124 ORTHO05D008980 4.5e-18 94.0 56 80.4
A02p09870 Brassica napus HOM05D007124 ORTHO05D008980 4.5e-18 94.0 56 80.4
A10p12390 Brassica napus HOM05D007124 ORTHO05D008980 4.5e-18 94.0 56 80.4
C02p16400 Brassica napus HOM05D007124 ORTHO05D008980 4.5e-18 94.0 56 80.4
C09p45870 Brassica napus HOM05D007124 ORTHO05D008980 4.5e-18 94.0 56 80.4
BolC2t07742H Brassica oleracea HOM05D007124 ORTHO05D008980 4.5e-18 94.0 56 80.4
BraA02t06051Z Brassica rapa HOM05D007124 ORTHO05D008980 4.5e-18 94.0 56 80.4
BraA10t43334Z Brassica rapa HOM05D007124 ORTHO05D008980 4.5e-18 94.0 56 80.4
CiPaw.12G132500 Carya illinoinensis HOM05D007124 ORTHO05D008980 4.5e-18 94.0 53 83.0
Carub.0008s1542 Capsella rubella HOM05D007124 ORTHO05D008980 5.9e-18 93.6 63 76.2
Sabra16G0198600 Salix brachista HOM05D007124 ORTHO05D008980 7.6e-18 93.2 54 81.5
AL8G30630 Arabidopsis lyrata HOM05D007124 ORTHO05D008980 1.0e-17 92.8 56 80.4
AT5G55125 Arabidopsis thaliana HOM05D007124 ORTHO05D008980 1.0e-17 92.8 56 80.4
BcaB08g35876 Brassica carinata HOM05D007124 ORTHO05D008980 1.0e-17 92.8 56 78.6
BcaC04g20268 Brassica carinata HOM05D007124 ORTHO05D008980 1.0e-17 92.8 56 80.4
BolC9t57437H Brassica oleracea HOM05D007124 ORTHO05D008980 1.0e-17 92.8 56 80.4
CiPaw.11G193400 Carya illinoinensis HOM05D007124 ORTHO05D008980 1.3e-17 92.4 53 81.1
SGA_v2.0_scaffold120G32846 Striga asiatica HOM05D007124 ORTHO05D008980 1.3e-17 92.4 51 86.3
Duzib170G0848 Durio zibethinus HOM05D007124 ORTHO05D008980 1.7e-17 92.0 63 74.6
Duzib213G1022 Durio zibethinus HOM05D007124 ORTHO05D008980 1.7e-17 92.0 63 74.6
MBI08_g04916_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 1.7e-17 92.0 60 80.0
MBI15_g24201_MAGBIO Magnolia biondii HOM05D007124 ORTHO05D008980 1.7e-17 92.0 60 80.0
Potri.001G314100 Populus trichocarpa HOM05D007124 ORTHO05D008980 1.7e-17 92.0 60 78.3
Atru.chr2.3503 Acer truncatum HOM05D007124 ORTHO05D008980 2.2e-17 91.7 61 72.1
Aa31LG3G11120 Aethionema arabicum HOM05D007124 ORTHO05D008980 2.2e-17 91.7 62 72.6
Glyma.10G051000 Glycine max HOM05D007124 ORTHO05D008980 2.2e-17 91.7 58 75.9
Medtr2g014910 Medicago truncatula HOM05D007124 ORTHO05D008980 2.2e-17 91.7 55 80.0
Glyma.13G138500 Glycine max HOM05D007124 ORTHO05D008980 2.9e-17 91.3 58 75.9
Glyma.13G152338 Glycine max HOM05D007124 ORTHO05D008980 2.9e-17 91.3 58 75.9
Lj6g0008322 Lotus japonicus HOM05D007124 ORTHO05D008980 2.9e-17 91.3 58 75.9
Lalb_Chr15g0089611 Lupinus albus HOM05D007124 ORTHO05D008980 2.9e-17 91.3 58 75.9
Lalb_Chr18g0059321 Lupinus albus HOM05D007124 ORTHO05D008980 2.9e-17 91.3 58 75.9
Psat0s3039g0080 Pisum sativum HOM05D007124 ORTHO05D008980 2.9e-17 91.3 59 79.7
EL10Ac7g17641 Beta vulgaris HOM05D007124 ORTHO05D008980 3.8e-17 90.9 56 78.6
Cpa.g.sc12.260 Carica papaya HOM05D007124 ORTHO05D008980 3.8e-17 90.9 61 77.0
Sabra16G0233800 Salix brachista HOM05D000336 ORTHO05D000593 3.8e-17 90.9 62 72.6
arahy.Tifrunner.gnm1.ann1.902QMU Arachis hypogaea HOM05D007124 ORTHO05D008980 5.0e-17 90.5 55 80.0
Medtr2g014940 Medicago truncatula HOM05D007124 ORTHO05D008980 5.0e-17 90.5 55 80.0
Sc12g0005860 Simmondsia chinensis HOM05D007124 ORTHO05D008980 5.0e-17 90.5 55 81.8
FvH4_3g23350 Fragaria vesca HOM05D007124 ORTHO05D008980 6.5e-17 90.1 50 80.0
Os11g0516100 Oryza sativa ssp. japonica HOM05D007124 ORTHO05D008980 6.5e-17 90.1 59 72.9
CARHR268480 Cardamine hirsuta HOM05D007124 ORTHO05D008980 8.5e-17 89.7 56 78.6
Psat1g201480 Pisum sativum HOM05D007124 ORTHO05D008980 8.5e-17 89.7 59 78.0
arahy.Tifrunner.gnm1.ann1.E6QS8A Arachis hypogaea HOM05D007124 ORTHO05D008980 1.1e-16 89.4 55 78.2
CANSAT11G2294 Cannabis sativa HOM05D007124 ORTHO05D008980 1.4e-16 89.0 57 75.4
FAN02G4031 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.4e-16 89.0 50 78.0
FAN05G4905 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.4e-16 89.0 50 78.0
FAN11G2242 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.4e-16 89.0 50 78.0
FAN21G2784 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.4e-16 89.0 50 78.0
FAN25G2055 Fragaria x ananassa HOM05D007124 ORTHO05D008980 1.4e-16 89.0 50 78.0
Phvul.006G180400 Phaseolus vulgaris HOM05D007124 ORTHO05D008980 1.4e-16 89.0 59 76.3
RcHm_v2.0_Chr5g0041121 Rosa chinensis HOM05D007124 ORTHO05D008980 1.4e-16 89.0 50 78.0
Thecc.07G030700 Theobroma cacao HOM05D007124 ORTHO05D008980 1.4e-16 89.0 64 75.0
Ah.15g092770 Amaranthus hybridus HOM05D007124 ORTHO05D008980 2.5e-16 88.2 65 72.3
Ca_00376_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 2.5e-16 88.2 55 76.4
Ca_00400_v3 Cicer arietinum L. HOM05D007124 ORTHO05D008980 2.5e-16 88.2 55 76.4
Thhalv10015372m.g Eutrema salsugineum HOM05D007124 ORTHO05D008980 3.2e-16 87.8 56 76.8
Prupe.4G220900 Prunus persica HOM05D007124 ORTHO05D008980 3.2e-16 87.8 50 78.0
BcaB05g22183 Brassica carinata HOM05D007124 ORTHO05D008980 4.2e-16 87.4 56 75.0
Cfa020296 Carpinus fangiana HOM05D007124 ORTHO05D008980 4.2e-16 87.4 56 76.8
Haze_09723 Corylus avellana HOM05D007124 ORTHO05D008980 4.2e-16 87.4 57 77.2
FAN16G3348 Fragaria x ananassa HOM05D007124 ORTHO05D008980 4.2e-16 87.4 61 70.5
Glyma.10G069200 Glycine max HOM05D007124 ORTHO05D008980 4.2e-16 87.4 58 74.1
SHI10538 Sapria himalayana HOM05D007124 ORTHO05D008980 5.5e-16 87.0 60 73.3
Gohir.1Z049637 Gossypium hirsutum HOM05D007124 ORTHO05D008980 7.2e-16 86.7 63 69.8
Gohir.D05G373400 Gossypium hirsutum HOM05D007124 ORTHO05D008980 7.2e-16 86.7 67 67.2
Gorai.009G442100 Gossypium raimondii HOM05D007124 ORTHO05D008980 7.2e-16 86.7 67 67.2
MD03G1195200 Malus domestica HOM05D007124 ORTHO05D008980 9.3e-16 86.3 50 78.0
Aqoxy1G03004 Aquilegia oxysepala HOM05D007124 ORTHO05D008980 1.2e-15 85.9 57 71.9
AUR62008759 Chenopodium quinoa HOM05D007124 ORTHO05D008980 1.2e-15 85.9 64 73.4
AUR62025479 Chenopodium quinoa HOM05D007124 ORTHO05D008980 1.2e-15 85.9 64 73.4
PSO675G6679 Papaver somniferum HOM05D007124 ORTHO05D008980 2.1e-15 85.1 56 71.4
FvH4_6g31480 Fragaria vesca HOM05D007124 ORTHO05D008980 2.7e-15 84.7 50 76.0
HPP92_015305 Vanilla planifolia HOM05D007124 ORTHO05D008980 2.7e-15 84.7 59 67.8
vmacro13375 Vaccinium macrocarpon HOM05D007124 ORTHO05D008980 7.9e-15 83.2 56 76.8
Cc05_g14150 Coffea canephora HOM05D007124 ORTHO05D008980 1.3e-14 82.4 55 70.9
ECA246G4235 Erigeron canadensis HOM05D007124 ORTHO05D008980 5.1e-14 80.5 42 88.1
MELO3C004505.2 Cucumis melo HOM05D007124 ORTHO05D008980 1.3e-12 75.9 50 70.0
CsaV3_2G002880 Cucumis sativus L. HOM05D007124 ORTHO05D008980 1.8e-11 72.0 56 60.7
unitig_0.g1624 Utricularia gibba HOM05D007124 ORTHO05D008980 1.6e-07 58.9 47 59.6
MD11G1211600 Malus domestica HOM05D007124 ORTHO05D008980 8.8e-06 53.1 37 62.2


User provided reference genes

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