Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g066870.3 Solanum lycopersicum HOM05D007000 ORTHO05D009020 0.0e+00 1570.8 842 100.0
Sopen11g026580 Solanum pennellii HOM05D007000 ORTHO05D009020 0.0e+00 1544.6 847 98.3
PGSC0003DMG400026534 Solanum tuberosum HOM05D007000 ORTHO05D009020 0.0e+00 1501.9 842 94.8
CAN.G644.32 Capsicum annuum HOM05D007000 ORTHO05D009020 0.0e+00 1362.1 770 86.8
Nitab4.5_0001453g0060 Nicotiana tabacum HOM05D007000 ORTHO05D009020 0.0e+00 1310.4 779 86.0
Nitab4.5_0007303g0050 Nicotiana tabacum HOM05D007000 ORTHO05D009020 0.0e+00 1285.0 818 81.3
Oeu050179.1 Olea europaea HOM05D007000 ORTHO05D009020 2.2e-309 1065.4 767 72.9
Dinv12525 Davidia involucrata HOM05D007000 ORTHO05D009020 4.2e-305 1051.2 764 71.3
Cc01_g09830 Coffea canephora HOM05D007000 ORTHO05D009020 5.2e-303 1044.3 776 68.8
MSTRG.18732 Avicennia marina HOM05D007000 ORTHO05D009020 1.7e-298 1029.2 764 69.0
Migut.D02336 Erythranthe guttata HOM05D007000 ORTHO05D009020 2.1e-296 1022.3 769 67.2
QL01p013748 Quercus lobata HOM05D007000 ORTHO05D009020 3.1e-292 1008.4 760 68.9
CSS0049563 Camellia sinensis var. sinensis HOM05D007000 ORTHO05D009020 6.5e-290 1000.7 598 80.1
GSVIVG01031401001 Vitis vinifera HOM05D007000 ORTHO05D009020 1.9e-289 999.2 802 65.1
Eucgr.J00424 Eucalyptus grandis HOM05D007000 ORTHO05D009020 5.2e-287 991.1 738 68.0
Potri.009G149100 Populus trichocarpa HOM05D007000 ORTHO05D009020 4.1e-284 981.5 761 66.4
Nn6g35052 Nelumbo nucifera HOM05D007000 ORTHO05D009020 1.3e-282 976.5 782 65.6
MD03G1134600 Malus domestica HOM05D007000 ORTHO05D009020 3.8e-282 974.9 731 68.1
Prupe.6G118900 Prunus persica HOM05D007000 ORTHO05D009020 9.5e-281 970.3 782 64.7
Sabra09G0117700 Salix brachista HOM05D007000 ORTHO05D009020 2.8e-280 968.8 766 65.5
Gohir.A07G107200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 2.0e-278 962.6 738 67.6
Gorai.001G119400 Gossypium raimondii HOM05D007000 ORTHO05D009020 7.5e-278 960.7 799 64.2
PGR119G0747 Punica granatum HOM05D007000 ORTHO05D009020 8.3e-277 957.2 739 67.3
TWI75G0014 Tripterygium wilfordii HOM05D007000 ORTHO05D009020 5.4e-276 954.5 764 65.8
RcHm_v2.0_Chr5g0055251 Rosa chinensis HOM05D007000 ORTHO05D009020 9.2e-276 953.7 759 65.5
TAR623G0382 Trochodendron aralioides HOM05D007000 ORTHO05D009020 2.0e-275 952.6 733 64.8
FvH4_3g29910 Fragaria vesca HOM05D007000 ORTHO05D009020 3.5e-275 951.8 769 63.6
FAN11G3012 Fragaria x ananassa HOM05D007000 ORTHO05D009020 3.5e-275 951.8 769 63.6
FAN21G0141 Fragaria x ananassa HOM05D007000 ORTHO05D009020 1.3e-274 949.9 772 64.0
Gohir.A07G107100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 3.9e-274 948.3 795 63.9
Gorai.001G119500 Gossypium raimondii HOM05D007000 ORTHO05D009020 1.9e-273 946.0 744 66.8
CiPaw.14G103700 Carya illinoinensis HOM05D007000 ORTHO05D009020 5.6e-273 944.5 730 65.6
Gohir.D07G111200 Gossypium hirsutum HOM05D007000 ORTHO05D009020 5.6e-273 944.5 744 66.5
ClCG02G021900 Citrullus lanatus HOM05D007000 ORTHO05D009020 2.1e-272 942.6 746 65.7
Sc12g0004140 Simmondsia chinensis HOM05D007000 ORTHO05D009020 1.5e-270 936.4 667 69.6
FAN16G1383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 1.1e-268 930.2 785 62.0
Duzib150G0107 Durio zibethinus HOM05D007000 ORTHO05D009020 2.4e-268 929.1 722 67.6
Sed0022610 Sechium edule HOM05D007000 ORTHO05D009020 5.4e-268 927.9 742 64.6
Peaxi162Scf00789g00534 Petunia axillaris HOM05D007000 ORTHO05D009020 7.0e-268 927.5 558 84.6
CANSAT54G2429 Cannabis sativa HOM05D007000 ORTHO05D009020 1.6e-264 916.4 790 61.5
Manes.04G009000 Manihot esculenta HOM05D007000 ORTHO05D009020 6.2e-264 914.4 742 65.9
Sp6g22700 Schrenkiella parvula HOM05D007000 ORTHO05D009020 1.4e-263 913.3 751 64.6
AL6G33670 Arabidopsis lyrata HOM05D007000 ORTHO05D009020 2.3e-263 912.5 734 64.6
DCAR_012163 Daucus carota HOM05D007000 ORTHO05D009020 7.5e-262 907.5 762 62.1
Thhalv10012645m.g Eutrema salsugineum HOM05D007000 ORTHO05D009020 7.5e-262 907.5 739 64.0
COL.COLO4_19295 Corchorus olitorius HOM05D007000 ORTHO05D009020 2.2e-261 906.0 682 67.9
BraA10t43904Z Brassica rapa HOM05D007000 ORTHO05D009020 1.4e-260 903.3 785 61.8
A10p18280 Brassica napus HOM05D007000 ORTHO05D009020 6.0e-259 897.9 794 60.8
Carub.0006s2036 Capsella rubella HOM05D007000 ORTHO05D009020 6.0e-259 897.9 723 64.3
AT5G22640 Arabidopsis thaliana HOM05D007000 ORTHO05D009020 1.0e-258 897.1 738 63.3
AUR62038302 Chenopodium quinoa HOM05D007000 ORTHO05D009020 5.1e-258 894.8 789 59.7
BolC9t58265H Brassica oleracea HOM05D007000 ORTHO05D009020 6.6e-258 894.4 797 60.6
BcaB08g36412 Brassica carinata HOM05D007000 ORTHO05D009020 2.5e-257 892.5 739 63.1
AUR62023939 Chenopodium quinoa HOM05D007000 ORTHO05D009020 2.5e-257 892.5 610 71.5
CARHR190940 Cardamine hirsuta HOM05D007000 ORTHO05D009020 1.6e-256 889.8 780 60.4
unitig_747.g21960 Utricularia gibba HOM05D007000 ORTHO05D009020 2.1e-256 889.4 772 61.3
Ciclev10027793m.g Citrus clementina HOM05D007000 ORTHO05D009020 4.7e-256 888.3 796 59.9
Lj3g0010220 Lotus japonicus HOM05D007000 ORTHO05D009020 1.5e-254 883.2 728 63.0
EL10Ac9g21077 Beta vulgaris HOM05D007000 ORTHO05D009020 4.4e-254 881.7 721 65.2
C09p53930 Brassica napus HOM05D007000 ORTHO05D009020 4.4e-254 881.7 764 61.3
PSO339G5428 Papaver somniferum HOM05D007000 ORTHO05D009020 9.9e-254 880.6 796 59.9
Lalb_Chr24g0395131 Lupinus albus HOM05D007000 ORTHO05D009020 1.1e-252 877.1 782 58.4
MELO3C021453.2 Cucumis melo HOM05D007000 ORTHO05D009020 4.1e-252 875.2 754 59.8
Aa31LG1G12980 Aethionema arabicum HOM05D007000 ORTHO05D009020 1.2e-251 873.6 764 61.8
Aqoxy1G00944 Aquilegia oxysepala HOM05D007000 ORTHO05D009020 1.6e-251 873.2 784 59.1
ECA238G2375 Erigeron canadensis HOM05D007000 ORTHO05D009020 2.3e-250 869.4 794 61.3
Lj1A221T47 Lonicera japonica HOM05D007000 ORTHO05D009020 5.1e-250 868.2 770 61.6
PSO063G0097 Papaver somniferum HOM05D007000 ORTHO05D009020 8.6e-250 867.5 796 60.4
SGA_v2.0_scaffold193G40708 Striga asiatica HOM05D007000 ORTHO05D009020 1.9e-249 866.3 775 60.6
Glyma.13G319300 Glycine max HOM05D007000 ORTHO05D009020 2.8e-248 862.4 730 62.1
CsaV3_6G014720 Cucumis sativus L. HOM05D007000 ORTHO05D009020 6.2e-248 861.3 766 62.3
HanXRQChr14g0451961 Helianthus annuus HOM05D007000 ORTHO05D009020 7.6e-246 854.4 801 58.7
Phvul.005G127300 Phaseolus vulgaris HOM05D007000 ORTHO05D009020 2.9e-245 852.4 753 59.9
Glyma.12G181600 Glycine max HOM05D007000 ORTHO05D009020 3.8e-245 852.0 736 60.7
CDE02G4201 Ceratophyllum demersum HOM05D007000 ORTHO05D009020 3.2e-244 849.0 779 58.3
VMungo1080G1560 Vigna mungo HOM05D007000 ORTHO05D009020 3.3e-241 839.0 745 59.3
Medtr2g084835 Medicago truncatula HOM05D007000 ORTHO05D009020 6.2e-240 834.7 742 57.7
ATR0820G103 Amborella trichopoda HOM05D007000 ORTHO05D009020 1.2e-238 830.5 724 59.5
Lsat_1_v5_gn_2_96400 Lactuca sativa HOM05D007000 ORTHO05D009020 1.3e-237 827.0 697 63.4
FAN16G0383 Fragaria x ananassa HOM05D007000 ORTHO05D009020 9.3e-236 820.8 849 54.7
Ah.01g004600 Amaranthus hybridus HOM05D007000 ORTHO05D009020 4.6e-235 818.5 786 57.8
Hund00783 Selenicereus undatus HOM05D007000 ORTHO05D009020 1.5e-233 813.5 772 58.9
arahy.Tifrunner.gnm1.ann1.0Z9K9L Arachis hypogaea HOM05D007000 ORTHO05D009020 2.5e-225 786.2 854 51.8
arahy.Tifrunner.gnm1.ann1.K5NCJW Arachis hypogaea HOM05D007000 ORTHO05D009020 2.5e-225 786.2 852 51.4
TPR.G32364 Trifolium pratense HOM05D007000 ORTHO05D009020 4.5e-222 775.4 775 54.3
Ca_01679_v3 Cicer arietinum L. HOM05D007000 ORTHO05D009020 2.2e-221 773.1 727 56.0
Psat5g254800 Pisum sativum HOM05D007000 ORTHO05D009020 3.2e-212 742.7 715 55.9
Thecc.09G291900 Theobroma cacao HOM05D007000 ORTHO05D009020 9.0e-207 724.5 544 70.2
Actinidia37100 Actinidia chinensis HOM05D007000 ORTHO05D009020 1.4e-167 594.3 794 46.1
HPP92_011511 Vanilla planifolia HOM05D007000 ORTHO05D009020 3.0e-157 560.1 335 74.9
Gohir.D07G111100 Gossypium hirsutum HOM05D007000 ORTHO05D009020 1.2e-155 554.7 581 55.9
Mapoly0021s0145 Marchantia polymorpha HOM05D007000 ORTHO05D009020 4.4e-153 546.2 605 46.6
Pp3c14_2260 Physcomitrium patens HOM05D007000 ORTHO05D009020 5.8e-153 545.8 463 57.5
Haze_23451 Corylus avellana HOM05D007000 ORTHO05D009020 2.7e-150 537.0 388 66.2
Atru.chr3.3385 Acer truncatum HOM05D007000 ORTHO05D009020 4.3e-148 529.6 472 59.1
ScUNg0001440 Simmondsia chinensis HOM05D007000 ORTHO05D009020 1.3e-141 508.1 400 65.8
SEGI_23936 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 2.0e-137 494.2 584 47.6
HPP92_011563 Vanilla planifolia HOM05D007000 ORTHO05D009020 2.2e-128 464.2 265 78.1
Oeu050178.1 Olea europaea HOM05D007000 ORTHO05D009020 2.5e-116 424.1 406 63.1
HPP92_011520 Vanilla planifolia HOM05D007000 ORTHO05D009020 2.6e-113 414.1 409 53.1
AagrBONN_evm.TU.Sc2ySwM_344.1665 Anthoceros agrestis HOM05D007000 ORTHO05D009020 2.5e-108 397.5 471 45.6
Peaxi162Scf00789g00535 Petunia axillaris HOM05D007000 ORTHO05D009020 6.9e-106 389.4 195 91.8
MD11G1157100 Malus domestica HOM05D007000 ORTHO05D009020 7.7e-89 332.8 451 49.7
Atru.chr3.3384 Acer truncatum HOM05D007000 ORTHO05D009020 3.8e-88 330.5 188 77.7
Cpa.g.sc47.64 Carica papaya HOM05D007000 ORTHO05D009020 4.1e-82 310.5 341 49.3
BcaC04g19594 Brassica carinata HOM05D007000 ORTHO05D009020 4.8e-67 260.4 185 64.9
Cpa.g.sc47.63 Carica papaya HOM05D007000 ORTHO05D009020 4.4e-60 237.3 258 58.1
TWI75G1888 Tripterygium wilfordii HOM05D007893 ORTHO05D010042 1.0e-32 146.4 117 62.4
CBR_g22485 Chara braunii HOM05D000019 ORTHO05D000048 3.3e-31 141.4 352 30.7
Actinidia35447 Actinidia chinensis HOM05D007000 ORTHO05D009020 1.2e-30 139.4 83 75.9
Aqoxy5G03114 Aquilegia oxysepala HOM05D003707 ORTHO05D004309 2.9e-19 101.7 77 63.6
Actinidia27040 Actinidia chinensis HOM05D007000 ORTHO05D030830 8.4e-19 100.1 281 35.9
HPP92_011562 Vanilla planifolia HOM05D007000 ORTHO05D009020 1.9e-18 99.0 114 43.0
SEGI_03022 Sequoiadendron giganteum HOM05D007000 ORTHO05D009020 4.6e-17 94.4 72 54.2
Potri.004G188432 Populus trichocarpa HOM05D007000 ORTHO05D030830 3.5e-09 68.2 170 34.7


User provided reference genes

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