Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g066610.2 Solanum lycopersicum HOM05D005360 ORTHO05D006501 3.6e-149 531.6 273 100.0
Sopen11g026340 Solanum pennellii HOM05D005360 ORTHO05D006501 5.8e-147 524.2 273 98.2
PGSC0003DMG400000427 Solanum tuberosum HOM05D005360 ORTHO05D006501 4.3e-142 508.1 273 94.5
Nitab4.5_0000442g0050 Nicotiana tabacum HOM05D005360 ORTHO05D006501 3.2e-121 438.7 270 83.7
CAN.G546.64 Capsicum annuum HOM05D005360 ORTHO05D006501 4.3e-118 428.3 273 83.2
Hma1.2p1_0051F.1_g029700 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 3.7e-101 372.1 271 69.4
CSS0014580 Camellia sinensis var. sinensis HOM05D005360 ORTHO05D006501 4.1e-100 368.6 270 68.9
Dinv29396 Davidia involucrata HOM05D005360 ORTHO05D006501 3.8e-98 362.1 270 67.4
Cc04_g14880 Coffea canephora HOM05D005360 ORTHO05D006501 6.1e-96 354.8 276 66.3
Lj1A216T24 Lonicera japonica HOM05D005360 ORTHO05D006501 6.1e-96 354.8 268 67.2
Peaxi162Scf00150g00315 Petunia axillaris HOM05D005360 ORTHO05D006501 6.7e-95 351.3 228 79.8
HanXRQChr13g0403531 Helianthus annuus HOM05D005360 ORTHO05D006501 8.8e-95 350.9 270 67.0
TAR633G1180 Trochodendron aralioides HOM05D005360 ORTHO05D006501 2.6e-94 349.4 251 70.5
GSVIVG01031434001 Vitis vinifera HOM05D005360 ORTHO05D006501 3.3e-94 349.0 273 66.3
SGA_v2.0_scaffold193G40720 Striga asiatica HOM05D005360 ORTHO05D006501 1.3e-93 347.1 270 64.8
DCAR_015495 Daucus carota HOM05D005360 ORTHO05D006501 3.7e-93 345.5 269 66.9
Actinidia24162 Actinidia chinensis HOM05D005360 ORTHO05D006501 1.4e-92 343.6 259 68.0
Hund07728 Selenicereus undatus HOM05D005360 ORTHO05D006501 1.4e-92 343.6 253 67.6
MSTRG.21078 Avicennia marina HOM05D005360 ORTHO05D006501 1.8e-92 343.2 269 63.6
CiPaw.14G105400 Carya illinoinensis HOM05D005360 ORTHO05D006501 3.1e-92 342.4 250 70.0
vmacro03239 Vaccinium macrocarpon HOM05D005360 ORTHO05D006501 3.1e-92 342.4 270 65.2
Thecc.09G295200 Theobroma cacao HOM05D005360 ORTHO05D006501 5.3e-92 341.7 270 66.3
Rhsim13G0102900 Rhododendron simsii HOM05D005360 ORTHO05D006501 7.0e-92 341.3 271 65.7
TWI31G0773 Tripterygium wilfordii HOM05D005360 ORTHO05D006501 1.2e-91 340.5 256 66.8
Migut.D02306 Erythranthe guttata HOM05D005360 ORTHO05D006501 2.9e-90 335.9 270 64.1
QL01p014311 Quercus lobata HOM05D005360 ORTHO05D006501 2.9e-90 335.9 229 74.2
Ah.01g016120 Amaranthus hybridus HOM05D005360 ORTHO05D006501 2.5e-89 332.8 278 62.9
Manes.11G154700 Manihot esculenta HOM05D005360 ORTHO05D006501 2.5e-89 332.8 250 66.8
Ciclev10029076m.g Citrus clementina HOM05D005360 ORTHO05D006501 6.1e-88 328.2 270 61.9
Sc21g0004290 Simmondsia chinensis HOM05D005360 ORTHO05D006501 1.8e-87 326.6 273 61.5
Haze_23502 Corylus avellana HOM05D005360 ORTHO05D006501 4.0e-87 325.5 258 65.5
Nn6g35157 Nelumbo nucifera HOM05D005360 ORTHO05D006501 4.0e-87 325.5 275 62.9
MD03G1130500 Malus domestica HOM05D005360 ORTHO05D006501 2.6e-86 322.8 232 72.4
Aqoxy1G01027 Aquilegia oxysepala HOM05D005360 ORTHO05D006501 1.3e-85 320.5 237 67.5
MD11G1152100 Malus domestica HOM05D005360 ORTHO05D006501 1.3e-85 320.5 231 71.4
MBI01_g19099_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 8.3e-85 317.8 227 69.6
Eucgr.B03910 Eucalyptus grandis HOM05D005360 ORTHO05D006501 1.8e-84 316.6 244 65.6
EL10Ac9g21036 Beta vulgaris HOM05D005360 ORTHO05D006501 4.1e-84 315.5 276 60.1
FvH4_3g30230 Fragaria vesca HOM05D005360 ORTHO05D006501 4.1e-84 315.5 231 66.7
Lsat_1_v5_gn_6_42160 Lactuca sativa HOM05D005360 ORTHO05D006501 9.1e-84 314.3 270 61.5
RcHm_v2.0_Chr5g0056101 Rosa chinensis HOM05D005360 ORTHO05D006501 9.1e-84 314.3 231 68.0
Atru.chr3.3432 Acer truncatum HOM05D005360 ORTHO05D006501 2.0e-83 313.2 229 69.0
Gohir.D07G110200 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.7e-83 312.8 229 67.2
Sabra09G0000500 Salix brachista HOM05D005360 ORTHO05D006501 4.5e-83 312.0 229 69.0
Gorai.001G118400 Gossypium raimondii HOM05D005360 ORTHO05D006501 1.0e-82 310.8 229 66.8
Glyma.13G219600 Glycine max HOM05D005360 ORTHO05D006501 1.3e-82 310.5 245 62.9
Potri.009G002000 Populus trichocarpa HOM05D005360 ORTHO05D006501 1.7e-82 310.1 227 68.7
Ca_01695_v3 Cicer arietinum L. HOM05D005360 ORTHO05D006501 2.9e-82 309.3 236 65.7
ATR0665G582 Amborella trichopoda HOM05D005360 ORTHO05D006501 3.3e-81 305.8 241 63.5
CANSAT64G2904 Cannabis sativa HOM05D005360 ORTHO05D006501 2.8e-80 302.8 232 66.8
CANSAT64G2995 Cannabis sativa HOM05D005360 ORTHO05D006501 2.8e-80 302.8 232 66.4
CARHR008050 Cardamine hirsuta HOM05D005360 ORTHO05D006501 1.4e-79 300.4 271 56.8
Lj3g0014716 Lotus japonicus HOM05D005360 ORTHO05D006501 1.4e-79 300.4 244 62.7
TPR.G32397 Trifolium pratense HOM05D005360 ORTHO05D006501 3.0e-79 299.3 259 58.7
Medtr2g084545 Medicago truncatula HOM05D005360 ORTHO05D006501 4.0e-79 298.9 254 57.9
MBI01_g31369_MAGBIO Magnolia biondii HOM05D005360 ORTHO05D006501 2.0e-78 296.6 227 66.5
THA.LOC104826399 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 2.6e-78 296.2 274 59.5
Phvul.006G166300 Phaseolus vulgaris HOM05D005360 ORTHO05D006501 4.4e-78 295.4 236 62.7
Thhalv10008429m.g Eutrema salsugineum HOM05D005360 ORTHO05D006501 1.7e-77 293.5 271 56.5
Aa31LG1G18020 Aethionema arabicum HOM05D005360 ORTHO05D006501 4.9e-77 292.0 237 62.4
AL1G18630 Arabidopsis lyrata HOM05D005360 ORTHO05D006501 8.3e-77 291.2 271 55.7
Sp1g06870 Schrenkiella parvula HOM05D005360 ORTHO05D006501 1.1e-76 290.8 251 59.0
BraA08t35436Z Brassica rapa HOM05D005360 ORTHO05D006501 1.4e-76 290.4 271 55.0
C08p50100 Brassica napus HOM05D005360 ORTHO05D006501 1.8e-76 290.0 271 57.9
BolC8t52540H Brassica oleracea HOM05D005360 ORTHO05D006501 1.8e-76 290.0 271 57.9
A08p35270 Brassica napus HOM05D005360 ORTHO05D006501 2.4e-76 289.7 271 55.0
AUR62031793 Chenopodium quinoa HOM05D005360 ORTHO05D006501 3.2e-76 289.3 273 55.7
AT1G08220 Arabidopsis thaliana HOM05D005360 ORTHO05D006501 4.1e-76 288.9 247 58.7
Gohir.A07G106300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 4.1e-76 288.9 239 62.3
Lalb_Chr24g0395031 Lupinus albus HOM05D005360 ORTHO05D006501 7.0e-76 288.1 269 56.1
Carub.0001s0758 Capsella rubella HOM05D005360 ORTHO05D006501 2.7e-75 286.2 273 55.7
PGR102G1574 Punica granatum HOM05D005360 ORTHO05D006501 4.5e-75 285.4 267 58.1
CDE09G0858 Ceratophyllum demersum HOM05D005360 ORTHO05D006501 7.8e-75 284.6 239 58.2
C08p03560 Brassica napus HOM05D005360 ORTHO05D006501 1.0e-74 284.3 271 53.9
FAN21G0874 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.7e-74 283.5 231 61.9
FAN11G3336 Fragaria x ananassa HOM05D005360 ORTHO05D006501 2.3e-74 283.1 231 62.3
PSO063G2369 Papaver somniferum HOM05D005360 ORTHO05D006501 3.9e-74 282.3 264 55.7
PSO339G5504 Papaver somniferum HOM05D005360 ORTHO05D006501 5.0e-74 282.0 264 55.3
Psat5g252440 Pisum sativum HOM05D005360 ORTHO05D006501 5.0e-74 282.0 230 60.0
BolC8t47160H Brassica oleracea HOM05D005360 ORTHO05D006501 6.6e-74 281.6 271 53.5
BcaC07g42518 Brassica carinata HOM05D005360 ORTHO05D006501 1.5e-73 280.4 232 62.1
THA.LOC104800565 Tarenaya hassleriana HOM05D005360 ORTHO05D006501 3.3e-73 279.3 270 56.3
SalBow6G0303 Salvia bowleyana HOM05D005360 ORTHO05D006501 8.0e-72 274.6 289 51.6
Sed0004275 Sechium edule HOM05D005360 ORTHO05D006501 8.0e-72 274.6 205 67.3
COL.COLO4_19249 Corchorus olitorius HOM05D000737 ORTHO05D000581 5.8e-70 268.5 185 71.4
TAR633G1639 Trochodendron aralioides HOM05D005360 ORTHO05D006501 2.9e-69 266.2 202 66.8
MELO3C021472.2 Cucumis melo HOM05D005360 ORTHO05D006501 4.9e-69 265.4 197 69.0
Duzib168G1167 Durio zibethinus HOM05D005360 ORTHO05D006501 5.4e-68 261.9 186 68.8
CsaV3_6G014530 Cucumis sativus L. HOM05D005360 ORTHO05D006501 9.2e-68 261.2 197 67.0
unitig_899.g14961 Utricularia gibba HOM05D005360 ORTHO05D006501 2.3e-66 256.5 245 55.1
Zm00001eb345720 Zea mays HOM05D005360 ORTHO05D006501 4.3e-65 252.3 229 57.2
BcaB03g13345 Brassica carinata HOM05D005360 ORTHO05D006501 2.8e-64 249.6 252 52.4
HPP92_015033 Vanilla planifolia HOM05D005360 ORTHO05D006501 4.0e-63 245.7 235 57.0
Os05g0176500 Oryza sativa ssp. japonica HOM05D005360 ORTHO05D006501 5.2e-63 245.4 242 54.1
Gohir.A07G000166 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.5e-62 243.8 186 65.6
arahy.Tifrunner.gnm1.ann1.9X9VA5 Arachis hypogaea HOM05D005360 ORTHO05D006501 5.8e-62 241.9 221 56.6
Gohir.1Z049633 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.2e-61 240.0 181 65.7
arahy.Tifrunner.gnm1.ann1.E5WW1G Arachis hypogaea HOM05D005360 ORTHO05D004899 2.1e-59 233.4 195 60.0
SHI06160 Sapria himalayana HOM05D005360 ORTHO05D006501 1.3e-58 230.7 219 57.1
HPP92_015112 Vanilla planifolia HOM05D005360 ORTHO05D006501 4.7e-56 222.2 222 55.4
Prupe.6G115300 Prunus persica HOM05D005360 ORTHO05D006501 3.2e-52 209.5 160 69.4
Gohir.A05G054800 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.9e-50 202.6 232 50.0
Hma1.2p1_0051F.1_g029710 Hydrangea macrophylla HOM05D005360 ORTHO05D006501 2.8e-48 196.4 123 76.4
Gohir.A02G097303 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.4e-47 193.4 209 54.5
Oeu026987.1 Olea europaea HOM05D005360 ORTHO05D006501 8.4e-45 184.9 121 71.9
VMungo0540G0253 Vigna mungo HOM05D005360 ORTHO05D006501 3.1e-39 166.4 138 62.3
SMO116G0134 Selaginella moellendorffii HOM05D005360 ORTHO05D006501 3.8e-37 159.5 216 39.8
Gohir.A10G063101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-36 157.9 173 52.0
Gohir.A09G043650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.1e-32 143.7 112 65.2
CiPaw.13G142900 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.8e-31 140.6 125 59.2
Cpa.g.sc2403.1 Carica papaya HOM05D005360 ORTHO05D006501 1.5e-30 137.5 153 50.3
Gohir.A11G191650 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-29 134.4 233 40.3
CiPaw.13G143100 Carya illinoinensis HOM05D005360 ORTHO05D006501 1.2e-27 127.9 116 57.8
Gohir.A06G034300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.3e-26 123.6 103 59.2
FAN09G1017 Fragaria x ananassa HOM05D005360 ORTHO05D006501 3.1e-23 113.2 110 55.5
AUR62023988 Chenopodium quinoa HOM05D005360 ORTHO05D006501 4.9e-21 105.9 87 58.6
FAN09G0332 Fragaria x ananassa HOM05D005360 ORTHO05D006501 8.4e-21 105.1 74 68.9
Gohir.A05G334300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 8.4e-21 105.1 124 47.6
Gohir.A06G100002 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.1e-20 104.8 71 73.2
Gohir.A06G038884 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.9e-18 96.3 123 46.3
Zm00001eb137350 Zea mays HOM05D005360 ORTHO05D006501 1.6e-16 90.9 82 52.4
Gohir.A06G133300 Gossypium hirsutum HOM05D005360 ORTHO05D006501 2.1e-16 90.5 99 51.5
Gohir.1Z049508 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.4e-15 87.8 87 50.6
BcaC07g37801 Brassica carinata HOM05D005360 ORTHO05D006501 1.8e-15 87.4 98 50.0
Gohir.A11G000150 Gossypium hirsutum HOM05D005360 ORTHO05D026494 7.6e-14 82.0 67 62.7
SEGI_40723 Sequoiadendron giganteum HOM05D005360 ORTHO05D006501 1.0e-13 81.6 91 49.5
FAN04G1623 Fragaria x ananassa HOM05D005360 ORTHO05D006501 1.7e-13 80.9 66 56.1
Gohir.A01G162600 Gossypium hirsutum HOM05D005360 ORTHO05D006501 3.3e-09 66.6 134 34.3
Eucgr.L03607 Eucalyptus grandis HOM05D005360 ORTHO05D006501 4.3e-09 66.2 66 45.5
Gohir.A02G089101 Gossypium hirsutum HOM05D005360 ORTHO05D006501 1.3e-08 64.7 44 65.9
Zm00001eb350410 Zea mays HOM05D005360 ORTHO05D006501 1.6e-08 64.3 49 55.1
Zm00001eb410990 Zea mays HOM05D005360 ORTHO05D006501 1.6e-08 64.3 49 55.1
Actinidia07196 Actinidia chinensis HOM05D005360 ORTHO05D006501 2.8e-08 63.5 178 28.7
Gohir.A02G000100 Gossypium hirsutum HOM05D003958 ORTHO05D005454 5.3e-07 59.3 55 61.8
SalBow1G4086 Salvia bowleyana HOM05D005360 ORTHO05D006501 5.3e-07 59.3 104 36.5
ECA240G4443 Erigeron canadensis HOM05D000331 ORTHO05D006501 6.9e-07 58.9 56 55.4
Gohir.A12G000201 Gossypium hirsutum HOM05D003958 ORTHO05D004864 1.5e-06 57.8 48 58.3
Zm00001eb228200 Zea mays HOM05D005360 ORTHO05D006501 5.9e-06 55.8 53 45.3
Zm00001eb229280 Zea mays HOM05D005360 ORTHO05D006501 5.9e-06 55.8 53 45.3


User provided reference genes

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