Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g066450.2 Solanum lycopersicum HOM05D007274 ORTHO05D009194 3.0e-34 147.9 73 100.0
Sopen11g026200 Solanum pennellii HOM05D007274 ORTHO05D009194 3.0e-34 147.9 73 100.0
PGSC0003DMG401000458 Solanum tuberosum HOM05D007274 ORTHO05D009194 3.0e-34 147.9 73 100.0
Peaxi162Scf00983g00003 Petunia axillaris HOM05D007274 ORTHO05D009194 7.5e-33 143.3 72 93.1
Nitab4.5_0000173g0170 Nicotiana tabacum HOM05D007274 ORTHO05D009194 1.7e-32 142.1 73 95.9
Nitab4.5_0009628g0020 Nicotiana tabacum HOM05D007274 ORTHO05D009194 2.4e-31 138.3 73 93.2
CAN.G546.54 Capsicum annuum HOM05D007274 ORTHO05D009194 3.1e-31 137.9 73 93.2
Rhsim13G0101200 Rhododendron simsii HOM05D007274 ORTHO05D009194 2.7e-30 134.8 73 86.3
Oeu007727.1 Olea europaea HOM05D007274 ORTHO05D009194 3.5e-30 134.4 73 91.8
Cc01_g10210 Coffea canephora HOM05D007274 ORTHO05D009194 4.5e-30 134.0 73 87.7
vmacro03251 Vaccinium macrocarpon HOM05D007274 ORTHO05D009194 5.9e-30 133.7 73 86.3
Actinidia07190 Actinidia chinensis HOM05D007274 ORTHO05D009194 1.7e-29 132.1 73 87.7
Rhsim13G0101500 Rhododendron simsii HOM05D007274 ORTHO05D009194 8.5e-29 129.8 73 83.6
Ciclev10029644m.g Citrus clementina HOM05D007274 ORTHO05D009194 5.5e-28 127.1 73 84.9
Lsat_1_v5_gn_1_64881 Lactuca sativa HOM05D007274 ORTHO05D009194 7.2e-28 126.7 73 82.2
Manes.04G012400 Manihot esculenta HOM05D007274 ORTHO05D009194 7.2e-28 126.7 73 86.3
AUR62024013 Chenopodium quinoa HOM05D007274 ORTHO05D009194 1.2e-27 125.9 73 83.6
HanXRQChr11g0346021 Helianthus annuus HOM05D007274 ORTHO05D009194 1.6e-27 125.6 73 83.6
Hund00829 Selenicereus undatus HOM05D007274 ORTHO05D009194 1.6e-27 125.6 73 84.9
SGA_v2.0_scaffold277G46704 Striga asiatica HOM05D007274 ORTHO05D009194 1.6e-27 125.6 73 84.9
DCAR_022681 Daucus carota HOM05D007274 ORTHO05D009194 2.1e-27 125.2 73 82.2
Migut.D02299 Erythranthe guttata HOM05D007274 ORTHO05D009194 2.7e-27 124.8 73 80.8
PGR102G1958 Punica granatum HOM05D007274 ORTHO05D009194 3.6e-27 124.4 73 83.6
AUR62041328 Chenopodium quinoa HOM05D007274 ORTHO05D009194 4.7e-27 124.0 73 82.2
ECA248G0925 Erigeron canadensis HOM05D007274 ORTHO05D009194 4.7e-27 124.0 73 80.8
Sc06g0006140 Simmondsia chinensis HOM05D007274 ORTHO05D009194 4.7e-27 124.0 73 84.9
CSS0039770 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 6.1e-27 123.6 73 79.5
CSS0045495 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 1.0e-26 122.9 73 82.2
CSS0014818 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 1.4e-26 122.5 73 82.2
SalBow6G3121 Salvia bowleyana HOM05D007274 ORTHO05D009194 1.4e-26 122.5 73 83.6
Thecc.09G297800 Theobroma cacao HOM05D007274 ORTHO05D009194 2.3e-26 121.7 73 79.5
Ah.01g004810 Amaranthus hybridus HOM05D007274 ORTHO05D009194 3.0e-26 121.3 73 80.8
A10p18160 Brassica napus HOM05D007274 ORTHO05D009194 5.2e-26 120.6 73 80.8
BraA10t43891Z Brassica rapa HOM05D007274 ORTHO05D009194 5.2e-26 120.6 73 80.8
Carub.0006s2065 Capsella rubella HOM05D007274 ORTHO05D009194 6.8e-26 120.2 73 79.5
Sabra04G0148000 Salix brachista HOM05D007274 ORTHO05D009194 2.0e-25 118.6 73 83.6
EL10Ac9g21016 Beta vulgaris HOM05D007274 ORTHO05D009194 2.6e-25 118.2 71 78.9
BcaB05g22677 Brassica carinata HOM05D007274 ORTHO05D009194 2.6e-25 118.2 73 78.1
BcaB08g36400 Brassica carinata HOM05D007274 ORTHO05D009194 2.6e-25 118.2 73 78.1
BcaC04g19606 Brassica carinata HOM05D007274 ORTHO05D009194 2.6e-25 118.2 73 78.1
C09p53770 Brassica napus HOM05D007274 ORTHO05D009194 2.6e-25 118.2 73 78.1
BolC9t58252H Brassica oleracea HOM05D007274 ORTHO05D009194 2.6e-25 118.2 73 78.1
CSS0018211 Camellia sinensis var. sinensis HOM05D007274 ORTHO05D009194 2.6e-25 118.2 73 79.5
CARHR190660 Cardamine hirsuta HOM05D007274 ORTHO05D009194 2.6e-25 118.2 73 78.1
Haze_23527 Corylus avellana HOM05D007274 ORTHO05D009194 2.6e-25 118.2 73 78.1
Thhalv10015213m.g Eutrema salsugineum HOM05D007274 ORTHO05D009194 2.6e-25 118.2 73 78.1
Sp6g22530 Schrenkiella parvula HOM05D007274 ORTHO05D009194 2.6e-25 118.2 73 78.1
Potri.004G217300 Populus trichocarpa HOM05D007274 ORTHO05D009194 4.4e-25 117.5 73 82.2
RcHm_v2.0_Chr5g0056551 Rosa chinensis HOM05D007274 ORTHO05D009194 4.4e-25 117.5 73 79.5
Cfa010139 Carpinus fangiana HOM05D007274 ORTHO05D009194 5.7e-25 117.1 73 79.5
AL6G34010 Arabidopsis lyrata HOM05D007274 ORTHO05D009194 7.5e-25 116.7 73 76.7
AT5G22875 Arabidopsis thaliana HOM05D007274 ORTHO05D009194 7.5e-25 116.7 73 75.3
FAN21G0952 Fragaria x ananassa HOM05D007274 ORTHO05D009194 7.5e-25 116.7 73 78.1
MBI04_g08417_MAGBIO Magnolia biondii HOM05D007274 ORTHO05D009194 7.5e-25 116.7 71 76.1
Sed0003405 Sechium edule HOM05D007274 ORTHO05D009194 7.5e-25 116.7 73 76.7
THA.LOC109116051 Tarenaya hassleriana HOM05D007274 ORTHO05D009194 7.5e-25 116.7 73 78.1
ClCG02G021670 Citrullus lanatus HOM05D007274 ORTHO05D009194 1.3e-24 115.9 73 76.7
FAN16G2799 Fragaria x ananassa HOM05D007274 ORTHO05D009194 1.3e-24 115.9 72 76.4
FvH4_3g30550 Fragaria vesca HOM05D007274 ORTHO05D009194 1.7e-24 115.5 73 76.7
FAN11G1565 Fragaria x ananassa HOM05D007274 ORTHO05D009194 1.7e-24 115.5 73 76.7
MD03G1128500 Malus domestica HOM05D007274 ORTHO05D009194 2.2e-24 115.2 73 76.7
QL01p014890 Quercus lobata HOM05D007274 ORTHO05D009194 2.2e-24 115.2 71 77.5
CANSAT64G0704 Cannabis sativa HOM05D007274 ORTHO05D009194 2.8e-24 114.8 72 77.8
Atru.chr3.3502 Acer truncatum HOM05D007274 ORTHO05D009194 4.9e-24 114.0 66 84.8
Aa31LG1G12850 Aethionema arabicum HOM05D007274 ORTHO05D009194 4.9e-24 114.0 73 74.0
unitig_899.g15364 Utricularia gibba HOM05D000376 ORTHO05D000237 6.3e-24 113.6 70 78.6
Medtr4g057190 Medicago truncatula HOM05D007274 ORTHO05D009194 1.1e-23 112.8 72 75.0
PSO384G1249 Papaver somniferum HOM05D007274 ORTHO05D009194 1.1e-23 112.8 74 73.0
Prupe.6G113700 Prunus persica HOM05D007274 ORTHO05D009194 1.1e-23 112.8 73 76.7
Gohir.D09G062900 Gossypium hirsutum HOM05D007274 ORTHO05D009194 1.4e-23 112.5 73 75.3
Gorai.006G077700 Gossypium raimondii HOM05D007274 ORTHO05D009194 1.4e-23 112.5 73 75.3
Os04g0165500 Oryza sativa ssp. japonica HOM05D007274 ORTHO05D009194 1.4e-23 112.5 73 74.0
Ca_10763_v3 Cicer arietinum L. HOM05D007274 ORTHO05D009194 1.8e-23 112.1 73 75.3
Duzib150G1296 Durio zibethinus HOM05D007274 ORTHO05D009194 1.8e-23 112.1 73 74.0
Duzib150G1526 Durio zibethinus HOM05D007274 ORTHO05D009194 1.8e-23 112.1 73 74.0
CiPaw.14G106900 Carya illinoinensis HOM05D007274 ORTHO05D009194 2.4e-23 111.7 73 75.3
Lj3g0015703 Lotus japonicus HOM05D007274 ORTHO05D009194 2.4e-23 111.7 73 74.0
arahy.Tifrunner.gnm1.ann1.BZT54Z Arachis hypogaea HOM05D007274 ORTHO05D009194 3.1e-23 111.3 73 76.7
arahy.Tifrunner.gnm1.ann1.F7FWRZ Arachis hypogaea HOM05D007274 ORTHO05D009194 3.1e-23 111.3 73 76.7
COL.COLO4_19207 Corchorus olitorius HOM05D007274 ORTHO05D009194 3.1e-23 111.3 73 75.3
Cpa.g.sc47.5 Carica papaya HOM05D007274 ORTHO05D009194 4.1e-23 110.9 73 75.3
Gohir.A09G064000 Gossypium hirsutum HOM05D007274 ORTHO05D009194 4.1e-23 110.9 73 74.0
Haze_08394 Corylus avellana HOM05D007274 ORTHO05D009194 5.4e-23 110.5 82 68.3
Lalb_Chr19g0136881 Lupinus albus HOM05D007274 ORTHO05D009194 1.2e-22 109.4 73 74.0
Psat7g223680 Pisum sativum HOM05D007274 ORTHO05D009194 1.2e-22 109.4 73 71.2
TPR.G36741 Trifolium pratense HOM05D007274 ORTHO05D009194 1.6e-22 109.0 73 72.6
HPP92_002407 Vanilla planifolia HOM05D007274 ORTHO05D009194 2.7e-22 108.2 73 72.6
Haze_23532 Corylus avellana HOM05D007274 ORTHO05D009194 7.7e-22 106.7 73 76.7
Nn2g13873 Nelumbo nucifera HOM05D007274 ORTHO05D009194 1.0e-21 106.3 71 70.4
GSVIVG01031456001 Vitis vinifera HOM05D007274 ORTHO05D009194 1.0e-21 106.3 73 69.9
Aqoxy1G01060 Aquilegia oxysepala HOM05D007274 ORTHO05D009194 6.6e-21 103.6 71 70.4
BNapus_Darmor_BZH_scaffold_38p00270 Brassica napus HOM05D007274 ORTHO05D009194 8.6e-21 103.2 65 78.5
C02p11370 Brassica napus HOM05D007274 ORTHO05D009194 8.6e-21 103.2 65 78.5
Nn5g27554 Nelumbo nucifera HOM05D007274 ORTHO05D009194 3.3e-20 101.3 71 67.6
CDE04G2982 Ceratophyllum demersum HOM05D007274 ORTHO05D009194 4.2e-20 100.9 65 73.8
BraA02t05697Z Brassica rapa HOM05D007274 ORTHO05D009194 7.2e-20 100.1 65 76.9
ATR0043G009 Amborella trichopoda HOM05D007274 ORTHO05D009194 2.1e-19 98.6 65 72.3
Glyma.12G082200 Glycine max HOM05D007274 ORTHO05D009194 1.4e-18 95.9 65 70.8
Phvul.005G069100 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 2.3e-18 95.1 65 70.8
Phvul.011G086800 Phaseolus vulgaris HOM05D007274 ORTHO05D009194 2.3e-18 95.1 65 70.8
Glyma.11G192200 Glycine max HOM05D007274 ORTHO05D009194 6.8e-18 93.6 64 70.3
SEGI_23633 Sequoiadendron giganteum HOM05D007274 ORTHO05D009194 2.0e-17 92.0 65 70.8
Mapoly0009s0144 Marchantia polymorpha HOM05D007274 ORTHO05D009194 9.2e-15 83.2 61 63.9
Lsat_1_v5_gn_1_64921 Lactuca sativa HOM05D007274 ORTHO05D009194 1.7e-13 79.0 66 65.2
Pp3c6_6370 Physcomitrium patens HOM05D007274 ORTHO05D009194 2.9e-13 78.2 61 62.3
TAR369G0919 Trochodendron aralioides HOM05D007274 ORTHO05D009194 3.9e-13 77.8 49 75.5
MD11G1149300 Malus domestica HOM05D007274 ORTHO05D009194 7.3e-12 73.6 53 69.8
SHI06197 Sapria himalayana HOM05D005377 ORTHO05D003034 2.0e-09 65.5 59 57.6


User provided reference genes

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