Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g065750.2 Solanum lycopersicum HOM05D004114 ORTHO05D004667 0.0e+00 1273.1 675 100.0
Sopen11g025510 Solanum pennellii HOM05D004114 ORTHO05D004667 0.0e+00 1229.2 676 96.9
Peaxi162Scf00004g00237 Petunia axillaris HOM05D004114 ORTHO05D004667 0.0e+00 1120.9 673 88.9
Nitab4.5_0001587g0080 Nicotiana tabacum HOM05D004114 ORTHO05D004667 0.0e+00 1100.9 659 88.8
Nitab4.5_0002741g0170 Nicotiana tabacum HOM05D004114 ORTHO05D004667 2.4e-271 938.7 563 88.5
CAN.G599.3 Capsicum annuum HOM05D004114 ORTHO05D004667 3.2e-263 911.8 515 92.4
Dinv22178 Davidia involucrata HOM05D004114 ORTHO05D004667 5.0e-256 887.9 678 72.7
Cc00_g05950 Coffea canephora HOM05D004114 ORTHO05D004667 3.4e-249 865.1 678 69.8
Actinidia23972 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.2e-246 856.7 678 69.0
Dinv36259 Davidia involucrata HOM05D004114 ORTHO05D004667 3.0e-245 852.0 663 70.7
vmacro12717 Vaccinium macrocarpon HOM05D004114 ORTHO05D004667 1.1e-244 850.1 682 68.2
Oeu015664.1 Olea europaea HOM05D004114 ORTHO05D004667 4.1e-242 841.6 672 68.0
GSVIVG01025259001 Vitis vinifera HOM05D004114 ORTHO05D004667 5.3e-242 841.3 678 67.7
CSS0048735 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 1.7e-240 836.3 676 68.2
MSTRG.12468 Avicennia marina HOM05D004114 ORTHO05D004667 3.2e-231 805.4 678 65.6
SGA_v2.0_scaffold42G16101 Striga asiatica HOM05D004114 ORTHO05D004667 2.7e-230 802.4 678 64.9
Migut.D00601 Erythranthe guttata HOM05D004114 ORTHO05D004667 3.3e-228 795.4 678 65.5
Manes.06G164400 Manihot esculenta HOM05D004114 ORTHO05D004667 2.2e-227 792.7 668 62.9
Thecc.09G233600 Theobroma cacao HOM05D004114 ORTHO05D004667 3.1e-226 788.9 661 64.3
CSS0035176 Camellia sinensis var. sinensis HOM05D004114 ORTHO05D004667 5.9e-225 784.6 676 65.2
SalBow6G3263 Salvia bowleyana HOM05D004114 ORTHO05D004667 2.9e-224 782.3 722 62.0
Duzib150G0789 Durio zibethinus HOM05D004114 ORTHO05D004667 1.5e-223 780.0 658 63.7
COL.COLO4_07585 Corchorus olitorius HOM05D004114 ORTHO05D004667 1.6e-222 776.5 654 63.3
DCAR_029951 Daucus carota HOM05D004114 ORTHO05D004667 4.7e-222 775.0 669 64.1
TWI34G1345 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 4.7e-222 775.0 674 61.4
Gorai.006G128700 Gossypium raimondii HOM05D004114 ORTHO05D004667 4.4e-220 768.5 673 62.6
QL01p004694 Quercus lobata HOM05D004114 ORTHO05D004667 4.4e-220 768.5 693 61.6
Gohir.A09G114400 Gossypium hirsutum HOM05D004114 ORTHO05D004667 1.7e-219 766.5 673 62.9
Gohir.D09G111100 Gossypium hirsutum HOM05D004114 ORTHO05D004667 2.2e-219 766.1 673 62.4
Cfa009771 Carpinus fangiana HOM05D004114 ORTHO05D004667 2.0e-217 759.6 666 62.5
MD03G1175100 Malus domestica HOM05D004114 ORTHO05D004667 2.0e-217 759.6 679 61.6
HanXRQChr07g0197461 Helianthus annuus HOM05D004114 ORTHO05D004667 4.2e-215 751.9 683 61.8
MD11G1193200 Malus domestica HOM05D004114 ORTHO05D004667 5.5e-215 751.5 677 61.3
CsaV3_1G042830 Cucumis sativus L. HOM05D004114 ORTHO05D004667 9.4e-215 750.7 675 60.0
TAR633G1524 Trochodendron aralioides HOM05D004114 ORTHO05D004667 9.4e-215 750.7 636 63.4
Potri.009G053400 Populus trichocarpa HOM05D004114 ORTHO05D004667 2.7e-214 749.2 692 59.7
Sc16g0011490 Simmondsia chinensis HOM05D004114 ORTHO05D004667 4.7e-214 748.4 655 62.0
Prupe.4G249300 Prunus persica HOM05D004114 ORTHO05D004667 6.1e-214 748.0 658 62.0
MELO3C015192.2 Cucumis melo HOM05D004114 ORTHO05D004667 1.4e-213 746.9 675 59.9
FvH4_3g28860 Fragaria vesca HOM05D004114 ORTHO05D004667 8.8e-213 744.2 656 61.9
Atru.chr3.2717 Acer truncatum HOM05D004114 ORTHO05D004667 5.7e-212 741.5 650 62.8
LjContig00081g0000990 Lotus japonicus HOM05D004114 ORTHO05D004667 5.7e-212 741.5 665 59.8
arahy.Tifrunner.gnm1.ann1.49TU8N Arachis hypogaea HOM05D004114 ORTHO05D004667 9.8e-212 740.7 662 59.2
arahy.Tifrunner.gnm1.ann1.Q5U408 Arachis hypogaea HOM05D004114 ORTHO05D004667 9.8e-212 740.7 662 59.4
RcHm_v2.0_Chr5g0052041 Rosa chinensis HOM05D004114 ORTHO05D004667 9.8e-212 740.7 658 60.9
Nn7g36204 Nelumbo nucifera HOM05D004114 ORTHO05D004667 1.3e-211 740.3 671 59.8
CANSAT54G0770 Cannabis sativa HOM05D004114 ORTHO05D004667 2.2e-211 739.6 690 59.7
Ca_06427_v3 Cicer arietinum L. HOM05D004114 ORTHO05D004667 2.2e-211 739.6 662 59.5
FAN16G1351 Fragaria x ananassa HOM05D004114 ORTHO05D004667 4.9e-211 738.4 677 60.6
Duzib168G0105 Durio zibethinus HOM05D004114 ORTHO05D004667 1.4e-210 736.9 666 61.6
Sabra09G0038900 Salix brachista HOM05D004114 ORTHO05D004667 2.4e-210 736.1 695 59.4
Glyma.02G304000 Glycine max HOM05D004114 ORTHO05D004667 4.1e-210 735.3 662 58.9
Glyma.18G070400 Glycine max HOM05D004114 ORTHO05D004667 5.4e-210 734.9 662 60.4
Medtr5g096860 Medicago truncatula HOM05D004114 ORTHO05D004667 7.0e-210 734.6 662 59.5
Phvul.006G062700 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 7.7e-209 731.1 658 59.9
Ah.06g194200 Amaranthus hybridus HOM05D004114 ORTHO05D004667 1.7e-208 729.9 677 59.5
Glyma.08G335400 Glycine max HOM05D004114 ORTHO05D004667 2.9e-208 729.2 662 59.7
unitig_699.g19135 Utricularia gibba HOM05D004114 ORTHO05D004667 2.9e-208 729.2 669 58.9
TPR.G1262 Trifolium pratense HOM05D004114 ORTHO05D004667 3.8e-208 728.8 662 59.4
Hund07507 Selenicereus undatus HOM05D004114 ORTHO05D004667 8.6e-208 727.6 651 60.8
Oeu063322.2 Olea europaea HOM05D004114 ORTHO05D004667 1.9e-207 726.5 661 61.7
FAN11G0384 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.5e-207 726.1 641 61.6
PGR119G0430 Punica granatum HOM05D004114 ORTHO05D004667 3.3e-207 725.7 675 60.1
Lsat_1_v5_gn_2_97760 Lactuca sativa HOM05D004114 ORTHO05D004667 9.5e-207 724.2 683 60.0
Phvul.008G283500 Phaseolus vulgaris HOM05D004114 ORTHO05D004667 4.7e-206 721.8 662 59.2
AUR62000120 Chenopodium quinoa HOM05D004114 ORTHO05D004667 3.0e-205 719.2 669 59.2
PSO339G0497 Papaver somniferum HOM05D004114 ORTHO05D004667 5.2e-205 718.4 677 58.5
VMungo0647G1293 Vigna mungo HOM05D004114 ORTHO05D004667 2.0e-204 716.5 662 58.3
ClCG03G013250 Citrullus lanatus HOM05D004114 ORTHO05D004667 7.5e-204 714.5 675 58.4
Psat2g005360 Pisum sativum HOM05D004114 ORTHO05D004667 7.0e-202 708.0 692 55.5
Aqoxy2G00130 Aquilegia oxysepala HOM05D004114 ORTHO05D004667 2.0e-201 706.4 666 57.2
FAN21G1677 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.0e-201 706.4 676 58.9
THA.LOC104817907 Tarenaya hassleriana HOM05D004114 ORTHO05D004667 6.6e-200 701.4 674 56.8
arahy.Tifrunner.gnm1.ann1.JLH2AW Arachis hypogaea HOM05D004114 ORTHO05D004667 1.9e-199 699.9 663 57.0
arahy.Tifrunner.gnm1.ann1.V027MD Arachis hypogaea HOM05D004114 ORTHO05D004667 4.3e-199 698.7 663 57.0
Lalb_Chr15g0082581 Lupinus albus HOM05D004114 ORTHO05D004667 9.5e-199 697.6 664 56.9
TWI60G1569 Tripterygium wilfordii HOM05D004114 ORTHO05D004667 5.2e-197 691.8 655 57.7
arahy.Tifrunner.gnm1.ann1.4V7EDQ Arachis hypogaea HOM05D004114 ORTHO05D004667 6.8e-197 691.4 586 61.6
Sed0020827 Sechium edule HOM05D004114 ORTHO05D004667 6.8e-197 691.4 639 59.5
Thhalv10011291m.g Eutrema salsugineum HOM05D004114 ORTHO05D004667 1.2e-196 690.6 659 56.9
Lalb_Chr18g0050571 Lupinus albus HOM05D004114 ORTHO05D004667 1.3e-195 687.2 655 56.6
Oeu043295.1 Olea europaea HOM05D004114 ORTHO05D004667 4.9e-195 685.3 585 66.0
Sp1g38010 Schrenkiella parvula HOM05D004114 ORTHO05D004667 8.3e-195 684.5 659 56.3
Aa31LG10G3520 Aethionema arabicum HOM05D004114 ORTHO05D004667 3.2e-194 682.6 658 56.8
AL1G59170 Arabidopsis lyrata HOM05D004114 ORTHO05D004667 9.2e-194 681.0 660 55.5
AT1G51350 Arabidopsis thaliana HOM05D004114 ORTHO05D004667 9.2e-194 681.0 659 56.0
BcaB07g33582 Brassica carinata HOM05D004114 ORTHO05D004667 1.0e-192 677.6 659 55.7
BcaC08g43302 Brassica carinata HOM05D004114 ORTHO05D004667 5.0e-192 675.2 659 55.8
BolC6t35762H Brassica oleracea HOM05D004114 ORTHO05D004667 5.0e-192 675.2 659 55.8
BraA06t23464Z Brassica rapa HOM05D004114 ORTHO05D004667 6.6e-192 674.9 659 55.8
CARHR041420 Cardamine hirsuta HOM05D004114 ORTHO05D004667 3.3e-191 672.5 659 55.5
FAN25G0168 Fragaria x ananassa HOM05D004114 ORTHO05D004667 6.2e-190 668.3 671 56.8
CiPaw.13G160800 Carya illinoinensis HOM05D004114 ORTHO05D004667 4.0e-189 665.6 585 62.7
Ciclev10014795m.g Citrus clementina HOM05D004114 ORTHO05D004667 1.3e-187 660.6 535 65.6
C06p06490 Brassica napus HOM05D004114 ORTHO05D004667 2.2e-187 659.8 649 55.5
EL10Ac4g10249 Beta vulgaris HOM05D004114 ORTHO05D004667 4.9e-187 658.7 669 55.6
A06p02560 Brassica napus HOM05D004114 ORTHO05D004667 1.9e-186 656.8 649 55.3
Carub.0001s4022 Capsella rubella HOM05D004114 ORTHO05D004667 2.4e-186 656.4 660 54.4
EL10Ac4g10252 Beta vulgaris HOM05D004114 ORTHO05D004667 1.3e-184 650.6 673 55.0
CDE05G0618 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 3.0e-184 649.4 675 52.1
Nn2g15370 Nelumbo nucifera HOM05D004114 ORTHO05D004667 3.3e-183 646.0 536 62.9
ECA238G2774 Erigeron canadensis HOM05D004114 ORTHO05D004667 8.1e-182 641.3 679 56.0
Haze_23137 Corylus avellana HOM05D004114 ORTHO05D004667 1.2e-169 600.9 615 57.6
AUR62019301 Chenopodium quinoa HOM05D004114 ORTHO05D004667 3.6e-166 589.3 537 58.7
Eucgr.J00767 Eucalyptus grandis HOM05D004114 ORTHO05D004667 6.4e-163 578.6 531 57.4
ATR0332G053 Amborella trichopoda HOM05D004114 ORTHO05D004667 1.3e-160 570.9 670 49.4
CDE05G0406 Ceratophyllum demersum HOM05D004114 ORTHO05D004667 9.6e-159 564.7 667 47.4
Zm00001eb115370 Zea mays HOM05D004114 ORTHO05D004667 1.8e-157 560.5 682 46.2
SEGI_01130 Sequoiadendron giganteum HOM05D004114 ORTHO05D004667 4.9e-155 552.4 667 47.1
HPP92_020382 Vanilla planifolia HOM05D004114 ORTHO05D004667 1.8e-149 533.9 675 45.3
Mapoly0179s0020 Marchantia polymorpha HOM05D004114 ORTHO05D004667 9.0e-141 505.0 669 44.8
Zm00001eb166150 Zea mays HOM05D004114 ORTHO05D004667 5.7e-135 485.7 641 43.7
TAR636G2716 Trochodendron aralioides HOM05D004114 ORTHO05D004667 1.1e-133 481.5 399 63.4
Lj1A330G26 Lonicera japonica HOM05D004114 ORTHO05D004667 1.7e-131 474.2 400 67.2
SMO347G0278 Selaginella moellendorffii HOM05D004114 ORTHO05D004667 6.5e-131 472.2 668 44.0
Pp3c15_7590 Physcomitrium patens HOM05D004114 ORTHO05D004667 2.7e-129 466.8 666 42.5
Pp3c9_10010 Physcomitrium patens HOM05D004114 ORTHO05D004667 7.4e-127 458.8 666 41.4
AagrBONN_evm.TU.Sc2ySwM_340.1837 Anthoceros agrestis HOM05D004114 ORTHO05D004667 2.9e-123 446.8 667 40.6
Cpa.g.sc84.54 Carica papaya HOM05D004114 ORTHO05D004667 8.5e-123 445.3 435 57.0
Psat3g081440 Pisum sativum HOM05D004114 ORTHO05D004667 2.1e-113 414.1 398 57.0
Actinidia06341 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.3e-83 315.1 248 66.9
Lj1A330G24 Lonicera japonica HOM05D004114 ORTHO05D004667 1.9e-82 311.2 252 65.5
BcaC01g01258 Brassica carinata HOM05D004114 ORTHO05D004667 3.4e-79 300.4 368 48.4
Psat4g064240 Pisum sativum HOM05D004114 ORTHO05D004667 8.6e-67 259.2 429 41.3
TAR636G0924 Trochodendron aralioides HOM05D004114 ORTHO05D004667 3.1e-64 250.8 228 61.8
CBR_g56096 Chara braunii HOM05D004114 ORTHO05D004667 1.7e-59 235.0 450 36.0
Psat3g081480 Pisum sativum HOM05D003675 ORTHO05D004318 5.6e-58 229.9 271 48.3
Cpa.g.sc84.55 Carica papaya HOM05D004114 ORTHO05D004667 8.1e-57 226.1 202 61.9
C03p89880 Brassica napus HOM05D004114 ORTHO05D004667 3.2e-53 214.2 379 40.1
BolC3t21309H Brassica oleracea HOM05D004114 ORTHO05D004667 5.4e-53 213.4 366 40.4
Psat5g252640 Pisum sativum HOM05D004114 ORTHO05D004667 4.0e-48 197.2 252 46.4
arahy.Tifrunner.gnm1.ann1.MJQJ0M Arachis hypogaea HOM05D004114 ORTHO05D004667 5.1e-43 180.3 203 51.2
Actinidia39399 Actinidia chinensis HOM05D004114 ORTHO05D004667 1.3e-41 175.6 236 50.0
BcaC08g43303 Brassica carinata HOM05D004114 ORTHO05D004667 8.1e-41 172.9 290 40.3
C03p89900 Brassica napus HOM05D004114 ORTHO05D004667 1.4e-37 162.2 302 39.4
Os11g0638900 Oryza sativa ssp. japonica HOM05D004114 ORTHO05D004667 2.4e-37 161.4 175 49.1
FAN23G2589 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.3e-35 154.8 133 60.9
Oeu054838.1 Olea europaea HOM05D004114 ORTHO05D004667 1.6e-33 148.7 109 69.7
BraA08t32330Z Brassica rapa HOM05D004114 ORTHO05D004667 6.9e-32 143.3 256 39.1
Actinidia06340 Actinidia chinensis HOM05D004114 ORTHO05D004667 7.6e-31 139.8 134 63.4
arahy.Tifrunner.gnm1.ann1.HDR10P Arachis hypogaea HOM05D004114 ORTHO05D004667 1.1e-29 136.0 187 43.9
Cre16.g664750 Chlamydomonas reinhardtii HOM05D004114 ORTHO05D004667 9.7e-26 122.9 635 25.2
Haze_23136 Corylus avellana HOM05D004114 ORTHO05D004667 1.6e-25 122.1 109 56.0
FvH4_1g30480 Fragaria vesca HOM05D001826 ORTHO05D015538 8.8e-19 99.8 96 57.3
Sabra16G0157900 Salix brachista HOM05D004114 ORTHO05D004667 5.7e-18 97.1 75 66.7
FAN26G0366 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.1e-16 91.3 132 45.5
FAN19G0092 Fragaria x ananassa HOM05D004114 ORTHO05D004667 5.3e-16 90.5 134 45.5
FAN06G1142 Fragaria x ananassa HOM05D004114 ORTHO05D004667 1.2e-15 89.4 132 43.2
FvH4_1g27340 Fragaria vesca HOM05D004114 ORTHO05D004667 8.5e-14 83.2 115 47.0
FvH4_1g27570 Fragaria vesca HOM05D004114 ORTHO05D004667 1.4e-13 82.4 73 60.3
FvH4_7g05120 Fragaria vesca HOM05D004114 ORTHO05D004667 9.4e-13 79.7 81 51.9
C03p89890 Brassica napus HOM05D004114 ORTHO05D004667 6.1e-12 77.0 67 56.7
arahy.Tifrunner.gnm1.ann1.LY7CXU Arachis hypogaea HOM05D004114 ORTHO05D004667 1.4e-11 75.9 68 52.9
FAN19G1745 Fragaria x ananassa HOM05D004114 ORTHO05D004667 2.3e-11 75.1 66 62.1
FAN28G1325 Fragaria x ananassa HOM05D004114 ORTHO05D004667 3.0e-11 74.7 68 60.3
Psat1g158360 Pisum sativum HOM05D000344 ORTHO05D025701 3.0e-11 74.7 63 60.3
arahy.Tifrunner.gnm1.ann1.WKB59G Arachis hypogaea HOM05D004114 ORTHO05D004667 6.3e-09 67.0 63 50.8
arahy.Tifrunner.gnm1.ann1.KKW1YJ Arachis hypogaea HOM05D004114 ORTHO05D004667 5.3e-08 63.9 44 68.2
Dinv18208 Davidia involucrata HOM05D000103 ORTHO05D000049 5.9e-07 60.5 59 62.7
Zm00001eb110990 Zea mays HOM05D000534 ORTHO05D000389 5.9e-07 60.5 135 37.0
BcaB04g17225 Brassica carinata HOM05D004114 ORTHO05D004667 1.3e-06 59.3 52 55.8
C03p89870 Brassica napus HOM05D004114 ORTHO05D004667 2.9e-06 58.2 49 61.2


User provided reference genes

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