Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g065740.2 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.3e-120 436.4 214 100.0
Sopen11g025500 Solanum pennellii HOM05D003890 ORTHO05D004514 1.4e-119 433.0 214 99.1
PGSC0003DMG400007341 Solanum tuberosum HOM05D003890 ORTHO05D004514 1.1e-116 423.3 214 96.7
CAN.G599.2 Capsicum annuum HOM05D003890 ORTHO05D004514 6.2e-104 380.9 214 90.2
Nitab4.5_0001587g0060 Nicotiana tabacum HOM05D003890 ORTHO05D004514 1.3e-96 356.7 217 82.0
Nitab4.5_0002741g0130 Nicotiana tabacum HOM05D003890 ORTHO05D004514 8.2e-96 354.0 217 81.1
Peaxi162Scf00004g02340 Petunia axillaris HOM05D003890 ORTHO05D004514 2.4e-87 325.9 211 78.2
Dinv36258 Davidia involucrata HOM05D003890 ORTHO05D004514 6.1e-75 284.6 217 65.4
Cc10_g03220 Coffea canephora HOM05D003890 ORTHO05D004514 6.7e-74 281.2 216 64.8
QL01p004686 Quercus lobata HOM05D003890 ORTHO05D004514 3.3e-73 278.9 221 62.9
Potri.001G258100 Populus trichocarpa HOM05D003890 ORTHO05D004514 2.4e-71 272.7 221 62.0
CiPaw.13G160900 Carya illinoinensis HOM05D003890 ORTHO05D004514 5.3e-71 271.6 221 61.1
Gohir.D05G072300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 9.1e-71 270.8 224 62.1
Gorai.009G073300 Gossypium raimondii HOM05D003890 ORTHO05D004514 9.1e-71 270.8 224 62.1
DCAR_002072 Daucus carota HOM05D003890 ORTHO05D004514 1.2e-70 270.4 211 64.0
Gohir.A05G069400 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.2e-70 270.4 224 62.1
Hma1.2p1_0027F.1_g017050 Hydrangea macrophylla HOM05D003890 ORTHO05D004514 1.2e-70 270.4 218 63.8
Duzib170G0856 Durio zibethinus HOM05D003890 ORTHO05D004514 2.0e-70 269.6 224 60.7
Sabra16G0157800 Salix brachista HOM05D003890 ORTHO05D004514 2.0e-70 269.6 221 60.2
Thecc.09G233900 Theobroma cacao HOM05D003890 ORTHO05D004514 2.0e-70 269.6 221 59.7
Nn2g15369 Nelumbo nucifera HOM05D003890 ORTHO05D004514 2.6e-70 269.2 222 62.2
COL.COLO4_07583 Corchorus olitorius HOM05D003890 ORTHO05D004514 3.5e-70 268.9 224 60.7
Manes.06G164200 Manihot esculenta HOM05D003890 ORTHO05D004514 3.5e-70 268.9 222 63.1
TAR636G2753 Trochodendron aralioides HOM05D003890 ORTHO05D004514 4.5e-70 268.5 221 62.9
Manes.14G002800 Manihot esculenta HOM05D003890 ORTHO05D004514 7.7e-70 267.7 225 63.1
Aqoxy2G00137 Aquilegia oxysepala HOM05D003890 ORTHO05D004514 1.3e-69 266.9 214 62.6
TAR633G1481 Trochodendron aralioides HOM05D003890 ORTHO05D004514 1.3e-69 266.9 221 62.4
CiPaw.14G119100 Carya illinoinensis HOM05D003890 ORTHO05D004514 2.2e-69 266.2 224 62.9
Duzib150G1364 Durio zibethinus HOM05D003890 ORTHO05D004514 2.9e-69 265.8 223 61.0
ClCG03G013240 Citrullus lanatus HOM05D003890 ORTHO05D004514 3.8e-69 265.4 221 61.1
Haze_23135 Corylus avellana HOM05D000807 ORTHO05D000662 5.0e-69 265.0 222 60.8
Atru.chr3.2715 Acer truncatum HOM05D003890 ORTHO05D004514 6.5e-69 264.6 216 63.4
Potri.009G053300 Populus trichocarpa HOM05D003890 ORTHO05D004514 6.5e-69 264.6 221 60.6
CsaV3_1G042820 Cucumis sativus L. HOM05D003890 ORTHO05D004514 8.5e-69 264.2 219 61.2
Actinidia06907 Actinidia chinensis HOM05D003890 ORTHO05D004514 1.5e-68 263.5 212 64.2
Prupe.4G249500 Prunus persica HOM05D003890 ORTHO05D004514 1.9e-68 263.1 218 61.0
Cfa009770 Carpinus fangiana HOM05D003890 ORTHO05D004514 2.5e-68 262.7 222 60.8
Actinidia16334 Actinidia chinensis HOM05D003890 ORTHO05D004514 5.5e-68 261.5 212 64.6
Medtr3g061630 Medicago truncatula HOM05D003890 ORTHO05D004514 5.5e-68 261.5 227 59.0
Sed0019717 Sechium edule HOM05D003890 ORTHO05D004514 5.5e-68 261.5 221 60.6
SGA_v2.0_scaffold8G04590 Striga asiatica HOM05D003890 ORTHO05D004514 5.5e-68 261.5 214 61.7
Ca_14881_v3 Cicer arietinum L. HOM05D003890 ORTHO05D004514 9.4e-68 260.8 224 60.3
Phvul.006G062600 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.6e-67 260.0 220 60.9
Psat5g163000 Pisum sativum HOM05D003890 ORTHO05D004514 1.6e-67 260.0 225 59.1
Oeu001480.1 Olea europaea HOM05D003890 ORTHO05D004514 2.1e-67 259.6 214 62.1
Glyma.18G070500 Glycine max HOM05D003890 ORTHO05D004514 2.7e-67 259.2 219 60.7
VMungo0540G2384 Vigna mungo HOM05D003890 ORTHO05D004514 6.1e-67 258.1 220 60.9
MSTRG.21378 Avicennia marina HOM05D003890 ORTHO05D004514 8.0e-67 257.7 214 59.3
Lj6g0021955 Lotus japonicus HOM05D003890 ORTHO05D004514 1.0e-66 257.3 225 60.4
PGR102G1724 Punica granatum HOM05D003890 ORTHO05D004514 1.0e-66 257.3 231 57.6
Glyma.08G335500 Glycine max HOM05D003890 ORTHO05D004514 1.4e-66 256.9 224 60.3
Sabra09G0038800 Salix brachista HOM05D003890 ORTHO05D004514 2.3e-66 256.1 215 61.4
MD03G1175000 Malus domestica HOM05D003890 ORTHO05D004514 8.8e-66 254.2 221 60.2
Ciclev10016574m.g Citrus clementina HOM05D003890 ORTHO05D004514 1.5e-65 253.4 222 57.7
FvH4_3g28850 Fragaria vesca HOM05D003890 ORTHO05D004514 2.6e-65 252.7 219 58.4
FAN16G3317 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.6e-65 252.7 219 58.4
RcHm_v2.0_Chr5g0052051 Rosa chinensis HOM05D003890 ORTHO05D004514 2.6e-65 252.7 216 59.3
CANSAT56G1539 Cannabis sativa HOM05D003890 ORTHO05D004514 5.7e-65 251.5 229 58.5
Oeu016684.1 Olea europaea HOM05D003890 ORTHO05D004514 5.7e-65 251.5 214 60.7
Cpa.g.sc84.53 Carica papaya HOM05D003890 ORTHO05D004514 7.5e-65 251.1 218 58.3
FAN25G3809 Fragaria x ananassa HOM05D003890 ORTHO05D004514 1.3e-64 250.4 219 58.0
FAN21G3604 Fragaria x ananassa HOM05D003890 ORTHO05D004514 2.2e-64 249.6 218 56.0
Lj1A330T24 Lonicera japonica HOM05D003890 ORTHO05D004514 2.8e-64 249.2 213 61.0
Rhsim01G0191800 Rhododendron simsii HOM05D003890 ORTHO05D004514 2.8e-64 249.2 210 59.5
TPR.G30124 Trifolium pratense HOM05D003890 ORTHO05D004514 2.8e-64 249.2 226 58.0
MD11G1193100 Malus domestica HOM05D003890 ORTHO05D004514 3.7e-64 248.8 219 59.4
FAN11G0759 Fragaria x ananassa HOM05D003890 ORTHO05D004514 4.8e-64 248.4 219 57.5
EL10Ac4g10247 Beta vulgaris HOM05D003890 ORTHO05D004514 1.1e-63 247.3 222 56.8
Phvul.008G283400 Phaseolus vulgaris HOM05D003890 ORTHO05D004514 1.1e-63 247.3 214 59.8
THA.LOC104807531 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 1.1e-63 247.3 217 58.5
Lalb_Chr18g0050551 Lupinus albus HOM05D003890 ORTHO05D004514 1.4e-63 246.9 215 58.6
Hund07506 Selenicereus undatus HOM05D003890 ORTHO05D004514 2.4e-63 246.1 218 56.9
THA.LOC104811066 Tarenaya hassleriana HOM05D003890 ORTHO05D004514 3.1e-63 245.7 216 59.3
AUR62019304 Chenopodium quinoa HOM05D003890 ORTHO05D004514 5.3e-63 245.0 222 57.2
Gohir.A09G114300 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.2e-62 243.8 214 57.9
Gohir.D09G111000 Gossypium hirsutum HOM05D003890 ORTHO05D004514 1.6e-62 243.4 217 58.5
Gorai.006G128600 Gossypium raimondii HOM05D003890 ORTHO05D004514 2.0e-62 243.0 217 58.5
Lsat_1_v5_gn_1_66000 Lactuca sativa HOM05D003890 ORTHO05D004514 4.5e-62 241.9 212 58.5
Dinv09354 Davidia involucrata HOM05D003890 ORTHO05D004514 1.3e-61 240.4 221 54.8
arahy.Tifrunner.gnm1.ann1.5L0PCQ Arachis hypogaea HOM05D003890 ORTHO05D004514 2.2e-61 239.6 212 57.5
ECA240G2592 Erigeron canadensis HOM05D003890 ORTHO05D004514 2.2e-61 239.6 216 57.4
PSO384G2797 Papaver somniferum HOM05D003890 ORTHO05D004514 2.2e-61 239.6 219 58.4
TWI60G0796 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 2.2e-61 239.6 214 58.9
Lsat_1_v5_gn_6_47921 Lactuca sativa HOM05D003890 ORTHO05D004514 3.8e-61 238.8 209 59.3
Lalb_Chr04g0247401 Lupinus albus HOM05D003890 ORTHO05D004514 6.5e-61 238.0 212 58.5
Lalb_Chr04g0247641 Lupinus albus HOM05D003890 ORTHO05D004514 6.5e-61 238.0 212 58.5
Hund22030 Selenicereus undatus HOM05D003890 ORTHO05D004514 1.5e-60 236.9 213 56.8
MBI02_g05665_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 7.2e-60 234.6 224 56.7
TWI32G0323 Tripterygium wilfordii HOM05D003890 ORTHO05D004514 1.2e-59 233.8 215 56.7
MSTRG.18426 Avicennia marina HOM05D003890 ORTHO05D004514 2.1e-59 233.0 211 56.9
Aa31LG4G8640 Aethionema arabicum HOM05D003890 ORTHO05D004514 2.7e-59 232.6 210 57.6
VMungo0647G1030 Vigna mungo HOM05D003890 ORTHO05D004514 8.0e-59 231.1 217 56.2
Eucgr.J00766 Eucalyptus grandis HOM05D003890 ORTHO05D004514 1.0e-58 230.7 212 57.5
AT5G19855 Arabidopsis thaliana HOM05D003890 ORTHO05D004514 1.4e-58 230.3 210 54.8
Migut.N02317 Erythranthe guttata HOM05D003890 ORTHO05D004514 1.8e-58 229.9 215 57.2
Ah.04g161930 Amaranthus hybridus HOM05D003890 ORTHO05D004514 3.0e-58 229.2 220 54.5
ECA233G4357 Erigeron canadensis HOM05D003890 ORTHO05D004514 4.0e-58 228.8 207 58.0
Nn7g36206 Nelumbo nucifera HOM05D003890 ORTHO05D004514 6.8e-58 228.0 225 55.1
CsaV3_4G024270 Cucumis sativus L. HOM05D003890 ORTHO05D004514 8.8e-58 227.6 214 55.1
HanXRQChr02g0056201 Helianthus annuus HOM05D003890 ORTHO05D004514 8.8e-58 227.6 216 55.1
MELO3C014593.2 Cucumis melo HOM05D003890 ORTHO05D004514 2.6e-57 226.1 214 52.8
AL6G31380 Arabidopsis lyrata HOM05D003890 ORTHO05D004514 5.7e-57 224.9 208 54.8
MBI04_g36752_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 9.8e-57 224.2 228 53.5
ClCG02G023230 Citrullus lanatus HOM05D003890 ORTHO05D004514 1.7e-56 223.4 215 55.3
Glyma.14G009900 Glycine max HOM05D003890 ORTHO05D004514 2.2e-56 223.0 211 58.3
ATR0332G008 Amborella trichopoda HOM05D003890 ORTHO05D004514 3.7e-56 222.2 215 54.9
vmacro12718 Vaccinium macrocarpon HOM05D003890 ORTHO05D004514 1.8e-55 219.9 241 51.5
BcaB01g04825 Brassica carinata HOM05D003890 ORTHO05D004514 3.1e-55 219.2 210 53.3
BcaB08g36566 Brassica carinata HOM05D003890 ORTHO05D004514 3.1e-55 219.2 215 54.9
A03p09680 Brassica napus HOM05D003890 ORTHO05D004514 3.1e-55 219.2 210 52.9
C03p11250 Brassica napus HOM05D003890 ORTHO05D004514 3.1e-55 219.2 210 53.3
BolC3t13596H Brassica oleracea HOM05D003890 ORTHO05D004514 3.1e-55 219.2 210 53.3
Carub.0006s1821 Capsella rubella HOM05D003890 ORTHO05D004514 5.4e-55 218.4 208 55.3
Cc02_g28010 Coffea canephora HOM05D003890 ORTHO05D004514 5.4e-55 218.4 217 50.2
Migut.D00602 Erythranthe guttata HOM05D003890 ORTHO05D004514 5.4e-55 218.4 217 53.5
SGA_v2.0_scaffold3G01504 Striga asiatica HOM05D003890 ORTHO05D004514 1.0e-53 214.2 208 52.9
MSTRG.28066 Avicennia marina HOM05D003890 ORTHO05D004514 2.2e-53 213.0 204 52.0
BcaC03g13717 Brassica carinata HOM05D003890 ORTHO05D004514 1.1e-52 210.7 210 51.9
BNapus_Darmor_BZH_scaffold_38p02060 Brassica napus HOM05D003890 ORTHO05D004514 1.5e-52 210.3 210 51.9
CDE02G1666 Ceratophyllum demersum HOM05D003890 ORTHO05D004514 1.9e-52 209.9 227 48.5
BraA03t10284Z Brassica rapa HOM05D003890 ORTHO05D004514 2.5e-52 209.5 224 49.6
Sed0005000 Sechium edule HOM05D003890 ORTHO05D004514 7.2e-52 208.0 213 52.6
unitig_8.g2995 Utricularia gibba HOM05D003890 ORTHO05D004514 7.2e-52 208.0 224 51.3
arahy.Tifrunner.gnm1.ann1.HEYT23 Arachis hypogaea HOM05D003890 ORTHO05D004514 9.4e-52 207.6 214 52.8
GSVIVG01025257001 Vitis vinifera HOM05D003890 ORTHO05D004514 1.2e-51 207.2 164 64.0
PGR119G1229 Punica granatum HOM05D003890 ORTHO05D004514 1.6e-51 206.8 224 49.6
BcaB01g04844 Brassica carinata HOM05D003890 ORTHO05D004514 2.7e-51 206.1 210 51.4
GSVIVG01032095001 Vitis vinifera HOM05D003890 ORTHO05D004514 2.7e-51 206.1 137 70.1
unitig_22.g6202 Utricularia gibba HOM05D003890 ORTHO05D004514 3.6e-51 205.7 197 55.8
CARHR193020 Cardamine hirsuta HOM05D003890 ORTHO05D004514 2.3e-50 203.0 191 52.9
BolC2t06986H Brassica oleracea HOM05D003890 ORTHO05D004514 4.0e-50 202.2 221 49.3
BraA02t05537Z Brassica rapa HOM05D003890 ORTHO05D004514 5.2e-50 201.8 223 48.9
Eucgr.B03687 Eucalyptus grandis HOM05D003890 ORTHO05D004514 8.8e-50 201.1 188 55.9
MELO3C015193.2 Cucumis melo HOM05D003890 ORTHO05D004514 4.4e-49 198.7 183 56.3
A02p05850 Brassica napus HOM05D003890 ORTHO05D004514 5.7e-49 198.4 232 47.0
Peaxi162Scf00953g00113 Petunia axillaris HOM05D003890 ORTHO05D004514 3.7e-48 195.7 211 47.9
Thhalv10015929m.g Eutrema salsugineum HOM05D003890 ORTHO05D004514 2.4e-47 193.0 214 49.5
Zm00001eb212460 Zea mays HOM05D003890 ORTHO05D004514 5.4e-47 191.8 135 63.0
HanXRQChr16g0524491 Helianthus annuus HOM05D003890 ORTHO05D004514 1.2e-46 190.7 174 53.4
Sopen01g034250 Solanum pennellii HOM05D003890 ORTHO05D004514 1.2e-46 190.7 215 47.9
MSTRG.17029 Avicennia marina HOM05D003890 ORTHO05D004514 1.6e-46 190.3 203 48.3
Solyc01g087190.4 Solanum lycopersicum HOM05D003890 ORTHO05D004514 1.6e-46 190.3 215 47.4
MBI04_g40116_MAGBIO Magnolia biondii HOM05D003890 ORTHO05D004514 2.7e-46 189.5 239 45.6
Os03g0807900 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 3.5e-46 189.1 137 63.5
HanXRQChr01g0018191 Helianthus annuus HOM05D003890 ORTHO05D004514 5.9e-46 188.3 214 48.1
SalBow6G5214 Salvia bowleyana HOM05D003890 ORTHO05D004514 1.3e-45 187.2 199 48.7
AUR62000123 Chenopodium quinoa HOM05D003890 ORTHO05D004514 2.3e-45 186.4 222 48.2
Os07g0569600 Oryza sativa ssp. japonica HOM05D003890 ORTHO05D004514 3.8e-45 185.7 132 62.9
Nitab4.5_0001186g0010 Nicotiana tabacum HOM05D003890 ORTHO05D004514 6.6e-45 184.9 217 45.6
Nitab4.5_0004290g0020 Nicotiana tabacum HOM05D003890 ORTHO05D004514 8.6e-45 184.5 215 45.6
SalBow6G3376 Salvia bowleyana HOM05D003890 ORTHO05D004514 1.1e-44 184.1 200 48.0
DCAR_003214 Daucus carota HOM05D003890 ORTHO05D004514 3.3e-44 182.6 181 53.0
PGSC0003DMG400006801 Solanum tuberosum HOM05D003890 ORTHO05D004514 3.3e-44 182.6 221 45.7
arahy.Tifrunner.gnm1.ann1.13C5F2 Arachis hypogaea HOM05D003890 ORTHO05D004514 5.6e-44 181.8 210 49.5
CAN.G1560.2 Capsicum annuum HOM05D003890 ORTHO05D004514 9.5e-44 181.0 217 45.6
Sc09g0000720 Simmondsia chinensis HOM05D003890 ORTHO05D004514 2.0e-41 173.3 153 59.5
Zm00001eb324740 Zea mays HOM05D003890 ORTHO05D004514 2.6e-41 172.9 131 58.0
Ah.06g194180 Amaranthus hybridus HOM05D003890 ORTHO05D004514 7.5e-41 171.4 261 40.6
HPP92_024873 Vanilla planifolia HOM05D003890 ORTHO05D004514 7.5e-41 171.4 155 56.1
arahy.Tifrunner.gnm1.ann1.V44IJD Arachis hypogaea HOM05D003890 ORTHO05D004514 3.7e-40 169.1 210 47.6
Pp3c9_10480 Physcomitrium patens HOM05D003890 ORTHO05D004514 1.4e-39 167.2 219 42.5
Pp3c12_1270 Physcomitrium patens HOM05D003890 ORTHO05D004514 4.6e-38 162.2 125 60.0
SMO275G0040 Selaginella moellendorffii HOM05D003890 ORTHO05D004514 5.0e-37 158.7 122 59.8
Mapoly0069s0007 Marchantia polymorpha HOM05D003890 ORTHO05D004514 2.5e-36 156.4 129 55.8
AagrBONN_evm.TU.Sc2ySwM_228.2147 Anthoceros agrestis HOM05D003890 ORTHO05D004514 3.3e-36 156.0 224 40.6
Lsat_1_v5_gn_4_31621 Lactuca sativa HOM05D003890 ORTHO05D004514 2.8e-35 152.9 146 53.4
Mapoly0002s0228 Marchantia polymorpha HOM05D003890 ORTHO05D004514 1.0e-34 151.0 130 54.6
BcaC04g19383 Brassica carinata HOM05D003890 ORTHO05D004514 1.8e-34 150.2 204 42.6
C09p56300 Brassica napus HOM05D003890 ORTHO05D004514 3.7e-32 142.5 220 40.0
BolC9t58499H Brassica oleracea HOM05D003890 ORTHO05D004514 3.7e-32 142.5 220 40.0
CBR_g21098 Chara braunii HOM05D003890 ORTHO05D004514 1.9e-31 140.2 117 52.1
SEGI_02367 Sequoiadendron giganteum HOM05D003890 ORTHO05D004514 5.4e-31 138.7 106 58.5
CSS0039551 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 8.6e-29 131.3 77 77.9
Sp6g24540 Schrenkiella parvula HOM05D003890 ORTHO05D004514 8.1e-27 124.8 210 37.6
arahy.Tifrunner.gnm1.ann1.11Y6U0 Arachis hypogaea HOM05D003890 ORTHO05D004514 2.6e-25 119.8 88 65.9
A10p19900 Brassica napus HOM05D003890 ORTHO05D004514 2.0e-17 93.6 58 72.4
BcaC04g19382 Brassica carinata HOM05D000916 ORTHO05D008653 7.8e-14 81.6 54 70.4
BraA10t44065Z Brassica rapa HOM05D003890 ORTHO05D004514 1.3e-13 80.9 49 71.4
CSS0045152 Camellia sinensis var. sinensis HOM05D003890 ORTHO05D004514 6.6e-13 78.6 112 42.9
SGA_v2.0_scaffold1G00707 Striga asiatica HOM05D003890 ORTHO05D004514 2.9e-08 63.2 126 37.3


User provided reference genes

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