Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g065340.2 Solanum lycopersicum HOM05D006404 ORTHO05D008170 0.0e+00 1910.2 924 100.0
Sopen11g025080 Solanum pennellii HOM05D006404 ORTHO05D008170 0.0e+00 1795.8 924 94.9
PGSC0003DMG400029994 Solanum tuberosum HOM05D006404 ORTHO05D008170 0.0e+00 1698.7 855 96.0
CAN.G494.3 Capsicum annuum HOM05D006404 ORTHO05D008170 0.0e+00 1659.4 930 86.7
Nitab4.5_0007711g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 0.0e+00 1575.5 939 82.6
Peaxi162Scf00004g03311 Petunia axillaris HOM05D006404 ORTHO05D008170 0.0e+00 1515.7 933 79.5
Nitab4.5_0006123g0010 Nicotiana tabacum HOM05D006404 ORTHO05D008170 0.0e+00 1492.6 900 81.1
Cc01_g05020 Coffea canephora HOM05D006404 ORTHO05D008170 0.0e+00 1214.5 939 61.2
CSS0037938 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 0.0e+00 1179.5 950 60.9
QL01p004100 Quercus lobata HOM05D006404 ORTHO05D008170 0.0e+00 1171.4 918 61.3
TAR633G0603 Trochodendron aralioides HOM05D006404 ORTHO05D008170 0.0e+00 1166.8 920 60.9
Cfa009810 Carpinus fangiana HOM05D006404 ORTHO05D008170 0.0e+00 1164.4 912 60.3
Ciclev10014162m.g Citrus clementina HOM05D006404 ORTHO05D008170 0.0e+00 1164.1 923 60.3
MSTRG.12459 Avicennia marina HOM05D006404 ORTHO05D008170 0.0e+00 1163.3 924 60.0
Potri.001G255700 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1162.1 925 59.9
GSVIVG01031534001 Vitis vinifera HOM05D006404 ORTHO05D008170 0.0e+00 1160.6 928 60.7
Oeu061307.1 Olea europaea HOM05D006404 ORTHO05D008170 0.0e+00 1157.9 853 65.3
Thecc.09G239000 Theobroma cacao HOM05D006404 ORTHO05D008170 0.0e+00 1153.3 942 59.8
Potri.009G051100 Populus trichocarpa HOM05D006404 ORTHO05D008170 0.0e+00 1152.9 946 58.4
FAN16G0405 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1142.9 942 58.9
RcHm_v2.0_Chr5g0053011 Rosa chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1142.9 941 58.9
Rhsim13G0217700 Rhododendron simsii HOM05D006404 ORTHO05D008170 0.0e+00 1139.8 979 57.3
FAN11G2181 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1138.3 942 58.5
FvH4_3g28450 Fragaria vesca HOM05D006404 ORTHO05D008170 0.0e+00 1137.9 945 58.4
TWI32G0006 Tripterygium wilfordii HOM05D006404 ORTHO05D008170 0.0e+00 1135.2 937 58.6
FAN21G1559 Fragaria x ananassa HOM05D006404 ORTHO05D008170 0.0e+00 1125.5 961 57.4
Manes.06G162300 Manihot esculenta HOM05D006404 ORTHO05D008170 0.0e+00 1125.5 925 58.6
Gorai.009G074000 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1119.0 941 58.4
MD03G1172000 Malus domestica HOM05D006404 ORTHO05D008170 0.0e+00 1111.3 937 56.6
Actinidia06923 Actinidia chinensis HOM05D006404 ORTHO05D008170 0.0e+00 1105.5 823 64.2
Eucgr.B03709 Eucalyptus grandis HOM05D006404 ORTHO05D008170 0.0e+00 1103.2 928 57.3
Gohir.D09G109000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 0.0e+00 1100.9 939 58.5
COL.COLO4_36457 Corchorus olitorius HOM05D006404 ORTHO05D008170 0.0e+00 1098.6 829 63.2
Gorai.006G126600 Gossypium raimondii HOM05D006404 ORTHO05D008170 0.0e+00 1098.6 939 58.3
Nn7g36358 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1094.0 905 57.9
Nn2g15163 Nelumbo nucifera HOM05D006404 ORTHO05D008170 0.0e+00 1090.9 906 57.4
Migut.N02343 Erythranthe guttata HOM05D006404 ORTHO05D008170 0.0e+00 1089.3 936 57.6
Sabra09G0037200 Salix brachista HOM05D006404 ORTHO05D008170 0.0e+00 1088.6 882 59.6
Haze_23174 Corylus avellana HOM05D006404 ORTHO05D008170 0.0e+00 1077.4 901 57.4
CsaV3_1G042990 Cucumis sativus L. HOM05D006404 ORTHO05D008170 0.0e+00 1075.1 933 56.4
MELO3C015171.2 Cucumis melo HOM05D006404 ORTHO05D008170 5.3e-309 1064.3 931 55.1
PGR102G1713 Punica granatum HOM05D006404 ORTHO05D008170 1.0e-307 1060.1 936 56.4
Duzib150G0746 Durio zibethinus HOM05D006404 ORTHO05D008170 4.9e-307 1057.7 946 57.2
Sabra16G0156500 Salix brachista HOM05D006404 ORTHO05D008170 6.5e-307 1057.4 888 57.7
ClCG03G013070 Citrullus lanatus HOM05D006404 ORTHO05D008170 1.9e-306 1055.8 934 55.5
Actinidia16347 Actinidia chinensis HOM05D006404 ORTHO05D008170 3.7e-302 1041.6 787 62.3
Prupe.4G254900 Prunus persica HOM05D006404 ORTHO05D008170 2.0e-300 1035.8 816 58.9
Hund07470 Selenicereus undatus HOM05D006404 ORTHO05D008170 7.2e-298 1027.3 891 55.9
VMungo1127G0106 Vigna mungo HOM05D006404 ORTHO05D008170 1.7e-294 1016.1 911 55.2
Glyma.01G227500 Glycine max HOM05D006404 ORTHO05D008170 4.8e-294 1014.6 920 54.0
Glyma.12G020900 Glycine max HOM05D006404 ORTHO05D008170 1.1e-293 1013.4 912 54.2
VMungo1215G1207 Vigna mungo HOM05D006404 ORTHO05D008170 1.1e-293 1013.4 918 54.5
Psat7g172680 Pisum sativum HOM05D006404 ORTHO05D008170 1.7e-291 1006.1 929 54.6
CANSAT54G0859 Cannabis sativa HOM05D006404 ORTHO05D008170 3.8e-291 1005.0 897 54.8
DCAR_029968 Daucus carota HOM05D006404 ORTHO05D008170 5.0e-291 1004.6 898 54.7
Lj3g0019929 Lotus japonicus HOM05D006404 ORTHO05D008170 3.2e-290 1001.9 913 55.2
Aqoxy2G00213 Aquilegia oxysepala HOM05D006404 ORTHO05D008170 9.4e-290 1000.3 913 54.2
Sed0002434 Sechium edule HOM05D006404 ORTHO05D008170 9.4e-290 1000.3 915 54.2
vmacro04128 Vaccinium macrocarpon HOM05D006404 ORTHO05D008170 5.7e-287 991.1 894 55.9
AUR62039864 Chenopodium quinoa HOM05D006404 ORTHO05D008170 2.8e-286 988.8 893 55.0
THA.LOC104811179 Tarenaya hassleriana HOM05D006404 ORTHO05D008170 2.8e-286 988.8 915 53.0
AUR62000151 Chenopodium quinoa HOM05D006404 ORTHO05D008170 1.4e-285 986.5 895 54.6
Medtr4g076810 Medicago truncatula HOM05D006404 ORTHO05D008170 9.1e-285 983.8 929 52.9
TPR.G13759 Trifolium pratense HOM05D006404 ORTHO05D008170 1.2e-284 983.4 933 53.7
Lalb_Chr03g0024521 Lupinus albus HOM05D006404 ORTHO05D008170 3.2e-282 975.3 932 51.9
Atru.chr3.2649 Acer truncatum HOM05D006404 ORTHO05D008170 9.4e-282 973.8 713 64.0
Lj2A624G32 Lonicera japonica HOM05D006404 ORTHO05D008170 2.1e-281 972.6 898 54.5
Sc16g0011280 Simmondsia chinensis HOM05D006404 ORTHO05D008170 6.1e-281 971.1 910 53.0
SGA_v2.0_scaffold3G01478 Striga asiatica HOM05D006404 ORTHO05D008170 8.0e-281 970.7 934 51.5
HanXRQChr13g0401241 Helianthus annuus HOM05D006404 ORTHO05D008170 1.0e-280 970.3 902 52.5
Zm00001eb332810 Zea mays HOM05D006404 ORTHO05D008170 6.7e-280 967.6 916 51.3
arahy.Tifrunner.gnm1.ann1.E0EAPG Arachis hypogaea HOM05D006404 ORTHO05D008170 4.4e-279 964.9 935 52.4
arahy.Tifrunner.gnm1.ann1.BK260Y Arachis hypogaea HOM05D006404 ORTHO05D008170 1.7e-278 963.0 935 52.4
ECA233G0536 Erigeron canadensis HOM05D006404 ORTHO05D008170 1.5e-271 939.9 808 57.1
Lsat_1_v5_gn_6_25840 Lactuca sativa HOM05D006404 ORTHO05D008170 3.7e-270 935.3 896 52.8
Ca_26059_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 1.6e-268 929.9 816 55.3
Ca_30127_v3 Cicer arietinum L. HOM05D006404 ORTHO05D008170 1.6e-268 929.9 816 55.3
CiPaw.13G154900 Carya illinoinensis HOM05D006404 ORTHO05D008170 2.3e-264 916.0 723 60.9
MBI19_g45588_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 7.7e-260 901.0 820 55.5
Ah.06g193910 Amaranthus hybridus HOM05D006404 ORTHO05D008170 2.6e-255 885.9 897 50.7
Gohir.A05G070000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.3e-254 883.6 755 57.5
ATR0307G124 Amborella trichopoda HOM05D006404 ORTHO05D008170 2.5e-250 869.4 946 48.0
Glyma.11G094500 Glycine max HOM05D006404 ORTHO05D008170 6.1e-249 864.8 720 57.1
SEGI_17812 Sequoiadendron giganteum HOM05D006404 ORTHO05D008170 1.2e-244 850.5 940 47.2
EL10Ac4g10212 Beta vulgaris HOM05D006404 ORTHO05D008170 4.6e-244 848.6 887 49.6
Duzib168G1842 Durio zibethinus HOM05D006404 ORTHO05D008170 6.4e-238 828.2 639 61.7
Cpa.g.sc84.27 Carica papaya HOM05D006404 ORTHO05D008170 6.6e-227 791.6 816 50.2
Gohir.A09G112300 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.9e-221 773.5 622 60.6
Manes.14G004336 Manihot esculenta HOM05D006404 ORTHO05D008170 1.7e-198 697.2 943 43.2
CSS0019486 Camellia sinensis var. sinensis HOM05D006404 ORTHO05D008170 2.5e-194 683.3 487 65.5
Phvul.002G034601 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 5.1e-187 659.1 652 49.7
Mapoly0128s0014 Marchantia polymorpha HOM05D006404 ORTHO05D008170 1.5e-183 647.5 978 37.3
Os01g0275900 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 7.9e-180 635.2 580 52.4
Gohir.D05G073000 Gossypium hirsutum HOM05D006404 ORTHO05D008170 8.5e-158 562.0 432 61.1
unitig_27.g25000 Utricularia gibba HOM05D006404 ORTHO05D008170 6.1e-156 555.8 502 56.0
Phvul.011G076700 Phaseolus vulgaris HOM05D006404 ORTHO05D008170 1.3e-145 521.5 565 48.7
Gohir.D05G072932 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.2e-140 505.0 473 54.8
HPP92_028181 Vanilla planifolia HOM05D006404 ORTHO05D008170 1.2e-135 488.4 500 46.8
CBR_g12234 Chara braunii HOM05D006404 ORTHO05D008170 8.3e-121 439.1 847 32.6
FAN25G0856 Fragaria x ananassa HOM05D006404 ORTHO05D008170 4.4e-114 416.8 399 55.1
Glyma.11G015367 Glycine max HOM05D006404 ORTHO05D008170 1.9e-112 411.4 383 52.7
PGSC0003DMG400035426 Solanum tuberosum HOM05D006404 ORTHO05D008170 1.2e-108 398.7 215 87.9
HPP92_028182 Vanilla planifolia HOM05D006404 ORTHO05D008170 1.8e-99 368.2 301 56.5
Gohir.A09G112350 Gossypium hirsutum HOM05D006404 ORTHO05D008170 1.2e-74 285.8 296 51.4
Duzib168G1560 Durio zibethinus HOM05D006404 ORTHO05D008170 5.1e-62 243.8 253 51.8
Os01g0275950 Oryza sativa ssp. japonica HOM05D006404 ORTHO05D008170 1.1e-61 242.7 268 45.1
unitig_27.g24999 Utricularia gibba HOM05D006404 ORTHO05D008170 1.5e-61 242.3 304 42.4
TAR633G2510 Trochodendron aralioides HOM05D006404 ORTHO05D008170 3.3e-61 241.1 258 49.2
PGSC0003DMG400025695 Solanum tuberosum HOM05D006404 ORTHO05D008170 9.4e-56 223.0 109 91.7
MBI19_g48146_MAGBIO Magnolia biondii HOM05D006404 ORTHO05D008170 2.2e-49 201.8 251 45.8
Lsat_1_v5_gn_5_69941 Lactuca sativa HOM05D006404 ORTHO05D008170 7.2e-32 143.7 151 51.0
Lsat_1_v5_gn_4_119980 Lactuca sativa HOM05D006404 ORTHO05D008170 1.2e-31 142.9 127 57.5
Lsat_1_v5_gn_8_47480 Lactuca sativa HOM05D006404 ORTHO05D008170 1.2e-31 142.9 151 52.3
Atru.chr3.2650 Acer truncatum HOM05D006404 ORTHO05D008170 2.0e-29 135.6 104 62.5
PRCOL_00003209 Prasinoderma coloniale HOM05D006404 ORTHO05D008170 1.6e-26 125.9 795 22.4
HPP92_012439 Vanilla planifolia HOM05D006404 ORTHO05D008170 1.9e-24 119.0 210 33.8
MELO3C030880.2 Cucumis melo HOM05D006404 ORTHO05D008170 1.5e-16 92.8 98 46.9
Thecc.01G390500 Theobroma cacao HOM05D006404 ORTHO05D008170 7.3e-16 90.5 92 48.9
Atru.chr3.2651 Acer truncatum HOM05D006404 ORTHO05D008170 9.8e-13 80.1 62 53.2
MELO3C034790.2 Cucumis melo HOM05D006404 ORTHO05D008170 3.2e-11 75.1 54 57.4
COL.COLO4_24475 Corchorus olitorius HOM05D003120 ORTHO05D003568 1.0e-09 70.1 41 73.2
MELO3C028471.2 Cucumis melo HOM05D006404 ORTHO05D008170 2.3e-09 68.9 52 57.7
TAR623G1438 Trochodendron aralioides HOM05D006201 ORTHO05D007178 3.3e-08 65.1 84 47.6
MELO3C034469.2 Cucumis melo HOM05D006404 ORTHO05D003726 7.3e-08 63.9 61 49.2


User provided reference genes

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