Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g065270.2 Solanum lycopersicum HOM05D005835 ORTHO05D007187 7.5e-95 350.5 178 100.0
Sopen11g025020 Solanum pennellii HOM05D005835 ORTHO05D007187 5.9e-92 340.9 178 97.8
PGSC0003DMG400029987 Solanum tuberosum HOM05D005835 ORTHO05D007187 1.6e-89 332.8 178 94.9
CAN.G1528.1 Capsicum annuum HOM05D005835 ORTHO05D007187 2.2e-78 295.8 182 84.1
Nitab4.5_0005230g0060 Nicotiana tabacum HOM05D005835 ORTHO05D007187 1.2e-76 290.0 182 82.4
Nitab4.5_0005535g0030 Nicotiana tabacum HOM05D005835 ORTHO05D007187 2.7e-76 288.9 182 82.4
Peaxi162Scf00004g03718 Petunia axillaris HOM05D005835 ORTHO05D007187 4.0e-64 248.4 174 75.3
Hma1.2p1_2131F.1_g314730 Hydrangea macrophylla HOM05D005835 ORTHO05D007187 1.0e-59 233.8 182 65.4
Dinv39089 Davidia involucrata HOM05D005835 ORTHO05D007187 8.7e-59 230.7 174 67.2
Dinv21579 Davidia involucrata HOM05D005835 ORTHO05D007187 1.4e-56 223.4 177 64.4
MSTRG.12070 Avicennia marina HOM05D005835 ORTHO05D007187 2.0e-55 219.5 176 65.9
Oeu040228.1 Olea europaea HOM05D005835 ORTHO05D007187 9.9e-55 217.2 181 62.4
Nn1g01126 Nelumbo nucifera HOM05D005835 ORTHO05D007187 1.7e-54 216.5 176 62.5
Nn1g01130 Nelumbo nucifera HOM05D005835 ORTHO05D007187 6.4e-54 214.5 176 61.9
Rhsim07G0102800 Rhododendron simsii HOM05D005835 ORTHO05D007187 4.2e-53 211.8 170 63.5
MBI04_g35668_MAGBIO Magnolia biondii HOM05D005835 ORTHO05D007187 3.5e-52 208.8 179 61.5
TAR374G0447 Trochodendron aralioides HOM05D005835 ORTHO05D007187 4.6e-52 208.4 178 62.4
SalBow6G1585 Salvia bowleyana HOM05D005835 ORTHO05D007187 6.0e-52 208.0 173 61.3
Migut.A00824 Erythranthe guttata HOM05D005835 ORTHO05D007187 6.7e-51 204.5 179 62.6
Migut.A00868 Erythranthe guttata HOM05D005835 ORTHO05D007187 1.1e-50 203.8 179 62.6
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 1.5e-50 203.4 180 60.0
SGA_v2.0_scaffold146G36171 Striga asiatica HOM05D005835 ORTHO05D007187 4.3e-50 201.8 173 60.1
SGA_v2.0_scaffold120G32837 Striga asiatica HOM05D005835 ORTHO05D007187 7.4e-50 201.1 172 59.9
Eucgr.E01477 Eucalyptus grandis HOM05D005835 ORTHO05D007187 3.7e-49 198.7 177 59.9
TAR375G0176 Trochodendron aralioides HOM05D005835 ORTHO05D007187 6.9e-48 194.5 170 60.0
Duzib068G0435 Durio zibethinus HOM05D005835 ORTHO05D007187 2.0e-47 193.0 182 58.8
Prupe.4G260700 Prunus persica HOM05D005835 ORTHO05D007187 2.6e-47 192.6 182 56.0
Cpa.g.sc29.103 Carica papaya HOM05D005835 ORTHO05D007187 4.5e-47 191.8 180 54.4
FAN13G2021 Fragaria x ananassa HOM05D005835 ORTHO05D007187 7.6e-47 191.0 183 56.3
Cc08_g13120 Coffea canephora HOM05D005835 ORTHO05D007187 6.4e-46 188.0 184 56.5
Aqoxy7G00679 Aquilegia oxysepala HOM05D005835 ORTHO05D007187 5.5e-45 184.9 173 58.4
CsaV3_3G003110 Cucumis sativus L. HOM05D005835 ORTHO05D007187 5.5e-45 184.9 183 55.2
Haze_08597 Corylus avellana HOM05D005835 ORTHO05D007187 7.1e-45 184.5 183 56.3
FvH4_5g00490 Fragaria vesca HOM05D005835 ORTHO05D007187 7.1e-45 184.5 183 55.2
FAN18G1180 Fragaria x ananassa HOM05D005835 ORTHO05D007187 7.1e-45 184.5 183 55.2
FAN08G1980 Fragaria x ananassa HOM05D005835 ORTHO05D007187 9.3e-45 184.1 183 54.1
Sc02g0009280 Simmondsia chinensis HOM05D005835 ORTHO05D007187 9.3e-45 184.1 178 52.2
TWI81G0081 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 1.2e-44 183.7 181 54.1
MELO3C013977.2 Cucumis melo HOM05D005835 ORTHO05D007187 2.1e-44 183.0 183 55.2
ClCG10G003070 Citrullus lanatus HOM05D005835 ORTHO05D007187 2.7e-44 182.6 183 55.7
MD04G1080500 Malus domestica HOM05D005835 ORTHO05D007187 4.6e-44 181.8 180 55.6
Manes.01G074300 Manihot esculenta HOM05D005835 ORTHO05D007187 4.6e-44 181.8 182 54.4
FAN04G1493 Fragaria x ananassa HOM05D005835 ORTHO05D007187 7.9e-44 181.0 183 55.2
Sc16g0006190 Simmondsia chinensis HOM05D005835 ORTHO05D007187 1.0e-43 180.6 180 51.1
CiPaw.12G105500 Carya illinoinensis HOM05D005835 ORTHO05D007187 2.3e-43 179.5 178 57.3
Atru.chr9.1404 Acer truncatum HOM05D005835 ORTHO05D007187 3.9e-43 178.7 177 54.2
Duzib205G1381 Durio zibethinus HOM05D005835 ORTHO05D007187 1.1e-42 177.2 174 54.6
ECA233G2089 Erigeron canadensis HOM05D005835 ORTHO05D007187 1.1e-42 177.2 179 54.2
CiPaw.11G149200 Carya illinoinensis HOM05D005835 ORTHO05D007187 1.9e-42 176.4 175 56.6
Sabra03G0079300 Salix brachista HOM05D005835 ORTHO05D007187 1.9e-42 176.4 182 52.7
Cfa012808 Carpinus fangiana HOM05D005835 ORTHO05D007187 3.3e-42 175.6 187 54.0
RcHm_v2.0_Chr7g0202021 Rosa chinensis HOM05D005835 ORTHO05D007187 5.6e-42 174.9 183 53.0
AUR62029858 Chenopodium quinoa HOM05D005835 ORTHO05D007187 7.4e-42 174.5 180 52.2
HanXRQChr02g0049681 Helianthus annuus HOM05D005835 ORTHO05D007187 7.4e-42 174.5 183 51.4
PSO782G1790 Papaver somniferum HOM05D005835 ORTHO05D007187 7.4e-42 174.5 184 56.0
AUR62025857 Chenopodium quinoa HOM05D005835 ORTHO05D007187 9.6e-42 174.1 180 52.8
Potri.003G114200 Populus trichocarpa HOM05D005835 ORTHO05D007187 9.6e-42 174.1 182 52.2
Thecc.03G259800 Theobroma cacao HOM05D005835 ORTHO05D007187 2.1e-41 172.9 182 53.3
CANSAT21G1576 Cannabis sativa HOM05D005835 ORTHO05D007187 2.8e-41 172.6 180 53.3
Sed0018910 Sechium edule HOM05D005835 ORTHO05D007187 2.8e-41 172.6 183 53.0
Gohir.D03G159700 Gossypium hirsutum HOM05D005835 ORTHO05D007187 6.2e-41 171.4 178 50.6
Potri.001G118700 Populus trichocarpa HOM05D005835 ORTHO05D007187 6.2e-41 171.4 182 54.4
Duzib084G0572 Durio zibethinus HOM05D005835 ORTHO05D007187 8.2e-41 171.0 174 55.2
EL10Ac4g07900 Beta vulgaris HOM05D005835 ORTHO05D007187 1.1e-40 170.6 175 52.6
PSO478G0096 Papaver somniferum HOM05D005835 ORTHO05D007187 1.1e-40 170.6 187 56.1
HPP92_005292 Vanilla planifolia HOM05D005835 ORTHO05D007187 1.4e-40 170.2 172 51.7
PGR031G1343 Punica granatum HOM05D005835 ORTHO05D007187 3.1e-40 169.1 181 54.1
arahy.Tifrunner.gnm1.ann1.7G3HX4 Arachis hypogaea HOM05D005835 ORTHO05D007187 5.3e-40 168.3 171 56.1
COL.COLO4_23892 Corchorus olitorius HOM05D005835 ORTHO05D007187 5.3e-40 168.3 177 52.5
Gorai.003G168000 Gossypium raimondii HOM05D005835 ORTHO05D007187 5.3e-40 168.3 178 50.0
HanXRQChr13g0394681 Helianthus annuus HOM05D005835 ORTHO05D007187 6.9e-40 167.9 184 52.7
Gohir.A03G013800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 3.4e-39 165.6 177 49.2
CDE02G0720 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 7.6e-39 164.5 175 50.3
Ah.01g013950 Amaranthus hybridus HOM05D005835 ORTHO05D007187 1.3e-38 163.7 168 52.4
arahy.Tifrunner.gnm1.ann1.4SJ6CH Arachis hypogaea HOM05D005835 ORTHO05D007187 1.3e-38 163.7 168 54.2
Ciclev10022502m.g Citrus clementina HOM05D005835 ORTHO05D007187 2.2e-38 162.9 182 51.1
Hund02098 Selenicereus undatus HOM05D005835 ORTHO05D007187 8.4e-38 161.0 174 48.9
CSS0008349 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 1.1e-37 160.6 167 52.1
Ca_12275_v3 Cicer arietinum L. HOM05D005835 ORTHO05D007187 1.9e-37 159.8 168 55.4
Gohir.D12G222800 Gossypium hirsutum HOM05D005835 ORTHO05D007187 1.9e-37 159.8 183 50.8
Gorai.008G238900 Gossypium raimondii HOM05D005835 ORTHO05D007187 1.9e-37 159.8 183 50.8
Aa31LG9G10270 Aethionema arabicum HOM05D005835 ORTHO05D007187 4.2e-37 158.7 175 50.9
Psat0s1988g0040 Pisum sativum HOM05D005835 ORTHO05D007187 7.1e-37 157.9 168 54.2
VMungo1215G0693 Vigna mungo HOM05D005835 ORTHO05D007187 7.1e-37 157.9 167 54.5
Manes.02G034200 Manihot esculenta HOM05D005835 ORTHO05D007187 9.3e-37 157.5 179 49.7
QL03p017823 Quercus lobata HOM05D005835 ORTHO05D007187 9.3e-37 157.5 178 49.4
QL93p2009_0035 Quercus lobata HOM05D005835 ORTHO05D007187 9.3e-37 157.5 178 49.4
Lalb_Chr05g0225471 Lupinus albus HOM05D005835 ORTHO05D007187 1.6e-36 156.8 171 54.4
GSVIVG01004287001 Vitis vinifera HOM05D005835 ORTHO05D007187 1.6e-36 156.8 173 52.0
CDE04G3390 Ceratophyllum demersum HOM05D005835 ORTHO05D007187 2.7e-36 156.0 175 48.0
Gohir.A12G220500 Gossypium hirsutum HOM05D005835 ORTHO05D007187 4.6e-36 155.2 183 49.7
Phvul.003G214325 Phaseolus vulgaris HOM05D005835 ORTHO05D007187 4.6e-36 155.2 167 53.3
TPR.G37587 Trifolium pratense HOM05D005835 ORTHO05D007187 6.0e-36 154.8 168 53.6
Lalb_Chr16g0389651 Lupinus albus HOM05D005835 ORTHO05D007187 1.3e-35 153.7 171 52.6
Sabra01G0091600 Salix brachista HOM05D005835 ORTHO05D007187 1.8e-35 153.3 189 48.7
GSVIVG01007420001 Vitis vinifera HOM05D005835 ORTHO05D007187 1.8e-35 153.3 172 51.2
CSS0045584 Camellia sinensis var. sinensis HOM05D005835 ORTHO05D007187 2.3e-35 152.9 150 52.0
Glyma.05G051800 Glycine max HOM05D005835 ORTHO05D007187 8.7e-35 151.0 167 53.3
Os05g0103500 Oryza sativa ssp. japonica HOM05D005835 ORTHO05D007187 4.3e-34 148.7 181 48.1
Medtr4g102330 Medicago truncatula HOM05D005835 ORTHO05D007187 5.7e-34 148.3 168 52.4
TWI15G0429 Tripterygium wilfordii HOM05D005835 ORTHO05D007187 2.8e-33 146.0 117 60.7
Zm00001eb356210 Zea mays HOM05D005835 ORTHO05D007187 4.1e-32 142.1 170 47.6
QL12p014300 Quercus lobata HOM05D005835 ORTHO05D007187 6.9e-32 141.4 172 46.5
Sp6g05250 Schrenkiella parvula HOM05D005835 ORTHO05D007187 1.5e-31 140.2 173 44.5
AL6G47200 Arabidopsis lyrata HOM05D005835 ORTHO05D007187 7.6e-31 137.9 173 45.1
CARHR253910 Cardamine hirsuta HOM05D005835 ORTHO05D007187 1.0e-30 137.5 173 45.1
AT4G12340 Arabidopsis thaliana HOM05D005835 ORTHO05D007187 1.3e-30 137.1 173 44.5
Lsat_1_v5_gn_6_4381 Lactuca sativa HOM05D005835 ORTHO05D007187 1.3e-30 137.1 172 47.1
Carub.0006s3148 Capsella rubella HOM05D005835 ORTHO05D007187 2.2e-30 136.3 172 44.8
SHI20590 Sapria himalayana HOM05D005835 ORTHO05D007187 1.4e-29 133.7 180 47.2
C02p40850 Brassica napus HOM05D005835 ORTHO05D007187 2.5e-29 132.9 173 42.8
BcaC03g16290 Brassica carinata HOM05D005835 ORTHO05D007187 4.2e-29 132.1 173 42.8
BolC2t10102H Brassica oleracea HOM05D005835 ORTHO05D007187 4.2e-29 132.1 173 42.8
THA.LOC104806344 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 7.2e-29 131.3 175 44.0
ATR0115G012 Amborella trichopoda HOM05D005835 ORTHO05D007187 1.0e-27 127.5 180 44.4
A02p25690 Brassica napus HOM05D005835 ORTHO05D007187 1.0e-27 127.5 173 42.2
BraA02t07561Z Brassica rapa HOM05D005835 ORTHO05D007187 1.3e-27 127.1 172 41.3
BcaB01g01732 Brassica carinata HOM05D005835 ORTHO05D007187 2.3e-27 126.3 175 41.1
Thhalv10029018m.g Eutrema salsugineum HOM05D005835 ORTHO05D007187 3.9e-27 125.6 171 42.7
THA.LOC104813805 Tarenaya hassleriana HOM05D005835 ORTHO05D007187 5.1e-27 125.2 175 44.0
C09p34190 Brassica napus HOM05D005835 ORTHO05D007187 1.1e-26 124.0 179 42.5
BolC9t56264H Brassica oleracea HOM05D005835 ORTHO05D007187 1.1e-26 124.0 179 42.5
A09p26960 Brassica napus HOM05D005835 ORTHO05D007187 1.5e-26 123.6 179 42.5
BraA09t38266Z Brassica rapa HOM05D005835 ORTHO05D007187 1.5e-26 123.6 179 42.5
BcaB05g23754 Brassica carinata HOM05D005835 ORTHO05D007187 9.7e-26 120.9 173 40.5
Actinidia05173 Actinidia chinensis HOM05D005835 ORTHO05D000538 2.2e-25 119.8 114 57.0
BcaC04g21221 Brassica carinata HOM05D005835 ORTHO05D007187 2.2e-25 119.8 172 41.9
SEGI_03973 Sequoiadendron giganteum HOM05D005835 ORTHO05D007187 3.7e-25 119.0 186 41.9
CARHR253930 Cardamine hirsuta HOM05D005835 ORTHO05D007187 1.2e-23 114.0 111 51.4
Mapoly0001s0295 Marchantia polymorpha HOM05D005835 ORTHO05D007187 1.7e-14 83.6 186 29.6
Pp3c15_5650 Physcomitrium patens HOM05D005835 ORTHO05D007187 1.9e-13 80.1 179 33.0
CBR_g50926 Chara braunii HOM05D005835 ORTHO05D007187 8.8e-11 71.2 93 41.9
Pp3c8_11610 Physcomitrium patens HOM05D005835 ORTHO05D007187 3.3e-10 69.3 180 30.0


User provided reference genes

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