Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g065240.2 Solanum lycopersicum HOM05D005532 ORTHO05D006873 7.3e-245 850.1 431 100.0
PGSC0003DMG400038188 Solanum tuberosum HOM05D005532 ORTHO05D006873 3.8e-241 837.8 431 97.9
Sopen11g024960 Solanum pennellii HOM05D005532 ORTHO05D006873 1.1e-240 836.3 431 97.9
CAN.G870.1 Capsicum annuum HOM05D005532 ORTHO05D006873 4.9e-225 784.3 431 92.3
Nitab4.5_0011829g0040 Nicotiana tabacum HOM05D005532 ORTHO05D006873 9.6e-221 770.0 436 89.7
Nitab4.5_0005230g0080 Nicotiana tabacum HOM05D005532 ORTHO05D006873 7.7e-202 707.2 436 84.4
Oeu043291.1 Olea europaea HOM05D005532 ORTHO05D006873 1.3e-188 663.3 412 78.2
CSS0007885 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 5.0e-185 651.4 414 77.1
GSVIVG01031546001 Vitis vinifera HOM05D005532 ORTHO05D006873 6.5e-185 651.0 404 77.0
Dinv36220 Davidia involucrata HOM05D005532 ORTHO05D006873 3.2e-184 648.7 407 78.1
Actinidia23981 Actinidia chinensis HOM05D005532 ORTHO05D006873 7.2e-184 647.5 408 77.2
Manes.14G005300 Manihot esculenta HOM05D005532 ORTHO05D006873 7.2e-184 647.5 416 75.5
Peaxi162Scf00004g00378 Petunia axillaris HOM05D005532 ORTHO05D006873 9.4e-184 647.1 423 79.0
TWI60G0905 Tripterygium wilfordii HOM05D005532 ORTHO05D006873 2.7e-183 645.6 399 78.2
Actinidia11667 Actinidia chinensis HOM05D005532 ORTHO05D006873 6.1e-183 644.4 405 78.3
Thecc.09G240600 Theobroma cacao HOM05D005532 ORTHO05D006873 1.4e-182 643.3 403 76.9
Migut.D00633 Erythranthe guttata HOM05D005532 ORTHO05D006873 3.9e-182 641.7 400 77.5
Potri.009G050100 Populus trichocarpa HOM05D005532 ORTHO05D006873 1.5e-181 639.8 429 73.0
PGR119G0320 Punica granatum HOM05D005532 ORTHO05D006873 1.5e-181 639.8 409 76.0
Cpa.g.sc892.3 Carica papaya HOM05D005532 ORTHO05D006873 4.4e-181 638.3 403 75.9
Duzib168G1386 Durio zibethinus HOM05D005532 ORTHO05D006873 9.7e-181 637.1 403 76.7
TAR636G1137 Trochodendron aralioides HOM05D005532 ORTHO05D006873 2.2e-180 636.0 404 75.7
unitig_52.g16880 Utricularia gibba HOM05D005532 ORTHO05D006873 6.3e-180 634.4 404 76.0
Nn7g36397 Nelumbo nucifera HOM05D005532 ORTHO05D006873 1.8e-179 632.9 406 75.6
SGA_v2.0_scaffold29G12299 Striga asiatica HOM05D005532 ORTHO05D006873 1.8e-179 632.9 400 75.8
Atru.chr3.2637 Acer truncatum HOM05D005532 ORTHO05D006873 3.1e-179 632.1 397 77.6
HanXRQChr13g0401441 Helianthus annuus HOM05D005532 ORTHO05D006873 3.1e-179 632.1 429 72.7
MD11G1188300 Malus domestica HOM05D005532 ORTHO05D006873 4.1e-179 631.7 399 76.4
Glyma.12G021500 Glycine max HOM05D005532 ORTHO05D006873 1.6e-178 629.8 413 74.6
Medtr4g076230 Medicago truncatula HOM05D005532 ORTHO05D006873 2.0e-178 629.4 399 76.7
Prupe.4G256000 Prunus persica HOM05D005532 ORTHO05D006873 3.5e-178 628.6 399 76.9
TPR.G22568 Trifolium pratense HOM05D005532 ORTHO05D006873 4.5e-178 628.2 397 75.6
Cc01_g02130 Coffea canephora HOM05D005532 ORTHO05D006873 1.0e-177 627.1 390 77.7
Ciclev10015321m.g Citrus clementina HOM05D005532 ORTHO05D006873 1.3e-177 626.7 393 77.6
CiPaw.13G154000 Carya illinoinensis HOM05D005532 ORTHO05D006873 2.2e-177 625.9 418 74.4
Lj1A319T38 Lonicera japonica HOM05D005532 ORTHO05D006873 3.8e-177 625.2 455 69.7
CANSAT54G2729 Cannabis sativa HOM05D005532 ORTHO05D006873 5.0e-177 624.8 398 75.4
RhsimUnG0131400 Rhododendron simsii HOM05D005532 ORTHO05D006873 8.5e-177 624.0 417 75.1
HanXRQChr02g0051521 Helianthus annuus HOM05D005532 ORTHO05D006873 1.9e-176 622.9 390 77.9
arahy.Tifrunner.gnm1.ann1.3FY9NR Arachis hypogaea HOM05D005532 ORTHO05D006873 2.5e-176 622.5 401 74.6
Gorai.001G136900 Gossypium raimondii HOM05D005532 ORTHO05D006873 2.5e-176 622.5 414 73.4
RcHm_v2.0_Chr5g0053381 Rosa chinensis HOM05D005532 ORTHO05D006873 2.5e-176 622.5 424 72.2
arahy.Tifrunner.gnm1.ann1.7Y4SN4 Arachis hypogaea HOM05D005532 ORTHO05D006873 3.2e-176 622.1 401 74.6
Lj3g0021729 Lotus japonicus HOM05D005532 ORTHO05D006873 5.5e-176 621.3 400 74.0
Lalb_Chr19g0139721 Lupinus albus HOM05D005532 ORTHO05D006873 5.5e-176 621.3 398 75.1
Rhsim01G0193400 Rhododendron simsii HOM05D005532 ORTHO05D006873 5.5e-176 621.3 428 72.7
Eucgr.J00735 Eucalyptus grandis HOM05D005532 ORTHO05D006873 7.2e-176 620.9 412 73.1
Phvul.011G078100 Phaseolus vulgaris HOM05D005532 ORTHO05D006873 7.2e-176 620.9 411 74.2
Lsat_1_v5_gn_6_26061 Lactuca sativa HOM05D005532 ORTHO05D006873 9.4e-176 620.5 394 75.6
COL.COLO4_36473 Corchorus olitorius HOM05D005532 ORTHO05D006873 1.6e-175 619.8 404 75.5
FvH4_3g28350 Fragaria vesca HOM05D005532 ORTHO05D006873 1.6e-175 619.8 403 74.2
FAN25G0557 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.6e-175 619.8 403 74.2
Gohir.D07G126700 Gossypium hirsutum HOM05D005532 ORTHO05D006873 2.7e-175 619.0 403 73.9
Aqoxy2G00249 Aquilegia oxysepala HOM05D005532 ORTHO05D006873 6.1e-175 617.8 412 72.3
FAN16G3415 Fragaria x ananassa HOM05D005532 ORTHO05D006873 1.4e-174 616.7 403 73.9
Sed0019503 Sechium edule HOM05D005532 ORTHO05D006873 2.0e-173 612.8 403 73.0
ECA233G0258 Erigeron canadensis HOM05D005532 ORTHO05D006873 2.6e-173 612.5 390 76.2
Psat7g179480 Pisum sativum HOM05D005532 ORTHO05D006873 2.8e-172 609.0 433 69.7
MELO3C014575.2 Cucumis melo HOM05D005532 ORTHO05D006873 3.7e-172 608.6 398 73.1
FAN21G2390 Fragaria x ananassa HOM05D005532 ORTHO05D006873 4.8e-172 608.2 403 72.7
PSO339G2797 Papaver somniferum HOM05D005532 ORTHO05D006873 1.4e-171 606.7 404 73.0
Sp1g37280 Schrenkiella parvula HOM05D005532 ORTHO05D006873 1.8e-171 606.3 417 71.2
AT1G50450 Arabidopsis thaliana HOM05D005532 ORTHO05D006873 3.1e-171 605.5 417 71.7
Haze_23183 Corylus avellana HOM05D005532 ORTHO05D006873 9.1e-171 604.0 454 68.3
AL1G58090 Arabidopsis lyrata HOM05D005532 ORTHO05D006873 1.6e-170 603.2 398 73.9
Hund07456 Selenicereus undatus HOM05D005532 ORTHO05D006873 4.5e-170 601.7 410 71.5
THA.LOC104821584 Tarenaya hassleriana HOM05D005532 ORTHO05D006873 5.9e-170 601.3 390 73.6
BcaC08g43214 Brassica carinata HOM05D005532 ORTHO05D006873 1.3e-169 600.1 398 72.9
Carub.0001s3953 Capsella rubella HOM05D005532 ORTHO05D006873 1.3e-169 600.1 414 71.0
Thhalv10011503m.g Eutrema salsugineum HOM05D005532 ORTHO05D006873 1.7e-169 599.7 398 73.6
PSO384G4693 Papaver somniferum HOM05D005532 ORTHO05D006873 2.2e-169 599.4 404 72.5
BcaB07g33482 Brassica carinata HOM05D005532 ORTHO05D006873 2.9e-169 599.0 398 72.6
VMungo1127G1594 Vigna mungo HOM05D005532 ORTHO05D006873 1.4e-166 590.1 400 72.8
Cfa009820 Carpinus fangiana HOM05D005532 ORTHO05D006873 1.8e-166 589.7 384 75.5
BraA06t23525Z Brassica rapa HOM05D005532 ORTHO05D006873 1.2e-165 587.0 398 72.4
A06p03120 Brassica napus HOM05D005532 ORTHO05D006873 1.5e-165 586.6 398 72.4
EL10Ac4g10189 Beta vulgaris HOM05D005532 ORTHO05D006873 1.3e-164 583.6 409 71.4
C06p05640 Brassica napus HOM05D005532 ORTHO05D006873 1.1e-163 580.5 398 71.6
BolC6t35671H Brassica oleracea HOM05D005532 ORTHO05D006873 1.1e-163 580.5 398 71.6
Os12g0137200 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 4.1e-163 578.6 411 68.4
vmacro14267 Vaccinium macrocarpon HOM05D005532 ORTHO05D006873 2.1e-159 566.2 553 56.8
Aa31LG10G3830 Aethionema arabicum HOM05D005532 ORTHO05D006873 1.0e-158 563.9 400 70.8
Sabra09G0036700 Salix brachista HOM05D005532 ORTHO05D006873 4.4e-157 558.5 354 77.1
HPP92_011271 Vanilla planifolia HOM05D005532 ORTHO05D006873 7.5e-157 557.8 386 69.4
Zm00001eb093270 Zea mays HOM05D005532 ORTHO05D006873 1.7e-156 556.6 395 68.4
AUR62000162 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.8e-155 553.1 351 76.4
Glyma.11G095400 Glycine max HOM05D005532 ORTHO05D006873 1.8e-155 553.1 354 76.3
CDE04G2597 Ceratophyllum demersum HOM05D005532 ORTHO05D006873 3.1e-155 552.4 393 67.9
arahy.Tifrunner.gnm1.ann1.PT8LN6 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.6e-154 550.1 399 65.9
AUR62039849 Chenopodium quinoa HOM05D005532 ORTHO05D006873 2.9e-153 545.8 372 72.3
ClCG02G023050 Citrullus lanatus HOM05D005532 ORTHO05D006873 5.0e-153 545.0 436 63.8
DCAR_023774 Daucus carota HOM05D005532 ORTHO05D006873 1.5e-149 533.5 398 66.6
Hma1.2p1_2169F.1_g315920 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 3.4e-149 532.3 331 77.3
Mapoly0066s0102 Marchantia polymorpha HOM05D005532 ORTHO05D006873 1.9e-144 516.5 413 59.8
Hund07457 Selenicereus undatus HOM05D005532 ORTHO05D006873 7.3e-144 514.6 376 68.1
Aa31LG10G3840 Aethionema arabicum HOM05D005532 ORTHO05D006873 9.5e-144 514.2 392 64.3
Haze_23184 Corylus avellana HOM05D005532 ORTHO05D006873 9.5e-144 514.2 383 68.4
Lsat_1_v5_gn_6_26080 Lactuca sativa HOM05D005532 ORTHO05D006873 1.2e-141 507.3 377 64.5
HPP92_011292 Vanilla planifolia HOM05D005532 ORTHO05D006873 1.2e-138 497.3 344 68.6
AagrBONN_evm.TU.Sc2ySwM_117.1967 Anthoceros agrestis HOM05D005532 ORTHO05D006873 6.0e-138 495.0 387 61.0
AUR62039851 Chenopodium quinoa HOM05D005532 ORTHO05D006873 1.0e-137 494.2 338 69.8
Gohir.A07G122800 Gossypium hirsutum HOM05D005532 ORTHO05D006873 8.1e-135 484.6 321 74.8
unitig_62.g23891 Utricularia gibba HOM05D005532 ORTHO05D006873 1.1e-131 474.2 334 70.1
Ah.04g162030 Amaranthus hybridus HOM05D005532 ORTHO05D006873 2.1e-127 459.9 388 61.9
Sc09g0000860 Simmondsia chinensis HOM05D005532 ORTHO05D006873 8.1e-119 431.4 323 68.4
QL01p018283 Quercus lobata HOM05D005532 ORTHO05D006873 5.8e-117 425.2 330 66.7
SMO367G1041 Selaginella moellendorffii HOM05D005532 ORTHO05D006873 1.9e-112 410.2 370 53.5
CsaV3_6G039150 Cucumis sativus L. HOM05D005532 ORTHO05D006873 4.9e-108 395.6 264 71.6
Sc09g0000870 Simmondsia chinensis HOM05D005532 ORTHO05D006873 1.4e-107 394.0 266 73.7
CARHR040460 Cardamine hirsuta HOM05D005532 ORTHO05D006873 6.7e-105 385.2 277 69.7
Cre16.g666050 Chlamydomonas reinhardtii HOM05D005532 ORTHO05D006873 2.9e-100 369.8 410 48.3
Pp3c19_6050 Physcomitrium patens HOM05D005532 ORTHO05D006873 1.9e-99 367.1 319 58.9
MBI05_g22559_MAGBIO Magnolia biondii HOM05D005532 ORTHO05D006873 3.2e-99 366.3 318 61.6
ATR0721G047 Amborella trichopoda HOM05D005532 ORTHO05D006873 6.2e-95 352.1 227 74.9
SGA_v2.0_scaffold29G12269 Striga asiatica HOM05D005532 ORTHO05D006873 2.6e-93 346.7 406 45.6
MCO10G311 Micromonas commoda HOM05D005532 ORTHO05D006873 7.1e-91 338.6 398 45.5
arahy.Tifrunner.gnm1.ann1.MM015B Arachis hypogaea HOM05D005532 ORTHO05D006873 3.3e-64 250.0 168 66.1
Migut.D00646 Erythranthe guttata HOM05D005532 ORTHO05D006873 5.3e-62 242.7 264 48.5
arahy.Tifrunner.gnm1.ann1.E0YEAW Arachis hypogaea HOM05D005532 ORTHO05D006873 3.2e-59 233.4 229 55.5
CsaV3_6G039160 Cucumis sativus L. HOM05D005532 ORTHO05D006873 1.4e-54 218.0 128 79.7
arahy.Tifrunner.gnm1.ann1.C2XCQ2 Arachis hypogaea HOM05D005532 ORTHO05D006873 1.2e-53 214.9 149 68.5
PRCOL_00003498 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 6.5e-52 209.1 338 35.2
SalBow6G6953 Salvia bowleyana HOM05D005532 ORTHO05D006873 1.5e-51 208.0 155 66.5
CSS0040461 Camellia sinensis var. sinensis HOM05D005532 ORTHO05D006873 9.8e-48 195.3 120 75.8
CBR_g3868 Chara braunii HOM05D000019 ORTHO05D000048 1.2e-45 188.3 167 56.9
Ciclev10017011m.g Citrus clementina HOM05D005532 ORTHO05D006873 2.5e-35 154.1 142 56.3
PRCOL_00002357 Prasinoderma coloniale HOM05D005532 ORTHO05D006873 4.6e-29 133.3 415 29.2
TPR.G22569 Trifolium pratense HOM05D005532 ORTHO05D006873 5.6e-27 126.3 108 59.3
Hma1.2p1_2169F.1_g315910 Hydrangea macrophylla HOM05D005532 ORTHO05D006873 7.3e-27 125.9 96 71.9
HanXRQChr09g0270661 Helianthus annuus HOM05D000715 ORTHO05D000024 2.8e-26 124.0 85 70.6
SEGI_01123 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 3.2e-22 110.5 94 59.6
SEGI_35247 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 6.2e-18 96.3 64 62.5
SEGI_01014 Sequoiadendron giganteum HOM05D005532 ORTHO05D006873 5.4e-14 83.2 78 53.8
Os11g0140700 Oryza sativa ssp. japonica HOM05D005532 ORTHO05D006873 3.9e-12 77.0 62 59.7
Zm00001eb093260 Zea mays HOM05D005990 ORTHO05D007908 6.6e-12 76.3 69 55.1
HanXRQChr13g0403791 Helianthus annuus HOM05D005532 ORTHO05D006873 8.6e-12 75.9 49 71.4
RhsimUnG0131100 Rhododendron simsii HOM05D005532 ORTHO05D000282 3.8e-07 60.5 45 55.6
unitig_62.g23890 Utricularia gibba HOM05D005532 ORTHO05D006873 4.9e-07 60.1 44 65.9
GSVIVG01003967001 Vitis vinifera HOM05D003363 ORTHO05D003952 1.1e-06 58.9 56 50.0


User provided reference genes

Program Settings