Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g065180.2 Solanum lycopersicum HOM05D006549 ORTHO05D008080 4.4e-193 677.9 384 100.0
PGSC0003DMG400031244 Solanum tuberosum HOM05D006549 ORTHO05D008080 2.8e-179 632.1 385 93.5
Sopen11g024900 Solanum pennellii HOM05D006549 ORTHO05D008080 6.9e-178 627.5 385 94.0
CAN.G633.4 Capsicum annuum HOM05D006549 ORTHO05D008080 7.4e-164 580.9 387 81.9
Nitab4.5_0006878g0020 Nicotiana tabacum HOM05D006549 ORTHO05D008080 1.7e-152 543.1 388 76.8
Nitab4.5_0002726g0080 Nicotiana tabacum HOM05D006549 ORTHO05D008080 3.2e-151 538.9 388 77.3
Peaxi162Scf00004g03918 Petunia axillaris HOM05D006549 ORTHO05D008080 1.7e-123 446.8 387 66.4
Actinidia16353 Actinidia chinensis HOM05D006549 ORTHO05D008080 3.6e-110 402.5 383 61.9
Cc01_g06100 Coffea canephora HOM05D006549 ORTHO05D008080 6.1e-110 401.7 382 57.6
Migut.N02355 Erythranthe guttata HOM05D006549 ORTHO05D008080 8.8e-109 397.9 386 61.4
CSS0047891 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 3.4e-108 396.0 360 63.1
Dinv22152 Davidia involucrata HOM05D006549 ORTHO05D008080 4.4e-108 395.6 389 57.3
Actinidia06932 Actinidia chinensis HOM05D006549 ORTHO05D008080 1.7e-107 393.7 388 61.9
Oeu025891.1 Olea europaea HOM05D006549 ORTHO05D008080 7.7e-105 384.8 393 58.3
MSTRG.17620 Avicennia marina HOM05D006549 ORTHO05D008080 2.9e-104 382.9 386 58.8
vmacro04120 Vaccinium macrocarpon HOM05D006549 ORTHO05D008080 5.0e-104 382.1 356 62.6
Rhsim13G0217400 Rhododendron simsii HOM05D002345 ORTHO05D002391 2.1e-102 376.7 358 62.8
Nn7g36445 Nelumbo nucifera HOM05D006549 ORTHO05D008080 1.4e-101 374.0 397 56.4
DCAR_000660 Daucus carota HOM05D006549 ORTHO05D008080 4.0e-101 372.5 417 51.3
Dinv36213 Davidia involucrata HOM05D006549 ORTHO05D008080 1.2e-100 370.9 388 54.4
FAN11G3700 Fragaria x ananassa HOM05D006549 ORTHO05D008080 1.5e-100 370.5 391 57.8
Duzib170G0947 Durio zibethinus HOM05D006549 ORTHO05D008080 2.0e-100 370.2 388 58.8
FvH4_3g28330 Fragaria vesca HOM05D006549 ORTHO05D008080 2.0e-100 370.2 391 57.8
unitig_27.g25003 Utricularia gibba HOM05D006549 ORTHO05D008080 2.6e-100 369.8 383 55.4
Gohir.A09G111700 Gossypium hirsutum HOM05D006549 ORTHO05D008080 7.5e-100 368.2 388 58.2
C09p64480 Brassica napus HOM05D006549 ORTHO05D008080 1.3e-99 367.5 382 55.2
BolC9t59282H Brassica oleracea HOM05D006549 ORTHO05D008080 1.3e-99 367.5 382 55.2
Potri.001G254600 Populus trichocarpa HOM05D006549 ORTHO05D008080 1.7e-99 367.1 388 55.7
FAN21G3651 Fragaria x ananassa HOM05D006549 ORTHO05D008080 2.2e-99 366.7 396 57.3
Gohir.D09G108300 Gossypium hirsutum HOM05D006549 ORTHO05D008080 2.2e-99 366.7 388 58.5
Gorai.006G126000 Gossypium raimondii HOM05D006549 ORTHO05D008080 2.2e-99 366.7 388 58.5
Potri.009G049700 Populus trichocarpa HOM05D006549 ORTHO05D008080 8.3e-99 364.8 385 55.3
PGR102G0709 Punica granatum HOM05D006549 ORTHO05D008080 8.3e-99 364.8 365 58.4
Thecc.09G240800 Theobroma cacao HOM05D006549 ORTHO05D008080 8.3e-99 364.8 387 56.8
GSVIVG01031548001 Vitis vinifera HOM05D006549 ORTHO05D008080 8.3e-99 364.8 392 56.4
ECA238G1745 Erigeron canadensis HOM05D006549 ORTHO05D008080 1.1e-98 364.4 364 56.6
MD03G1170300 Malus domestica HOM05D006549 ORTHO05D008080 5.4e-98 362.1 401 56.4
Manes.14G005500 Manihot esculenta HOM05D006549 ORTHO05D008080 1.6e-97 360.5 398 56.0
CiPaw.13G153800 Carya illinoinensis HOM05D006549 ORTHO05D008080 2.0e-97 360.1 388 56.4
SGA_v2.0_scaffold42G16082 Striga asiatica HOM05D006549 ORTHO05D008080 2.0e-97 360.1 383 54.6
Sc09g0000890 Simmondsia chinensis HOM05D006549 ORTHO05D008080 7.8e-97 358.2 362 60.2
Lsat_1_v5_gn_2_29261 Lactuca sativa HOM05D006549 ORTHO05D008080 1.7e-96 357.1 387 54.8
BraA03t09898Z Brassica rapa HOM05D006549 ORTHO05D008080 3.0e-96 356.3 385 53.2
Phvul.002G033900 Phaseolus vulgaris HOM05D006549 ORTHO05D008080 3.9e-96 355.9 367 58.3
TWI39G1226 Tripterygium wilfordii HOM05D006549 ORTHO05D008080 3.9e-96 355.9 388 57.5
A03p05610 Brassica napus HOM05D006549 ORTHO05D008080 6.6e-96 355.1 354 55.1
BolC3t13156H Brassica oleracea HOM05D006549 ORTHO05D008080 6.6e-96 355.1 381 56.7
CARHR200690 Cardamine hirsuta HOM05D006549 ORTHO05D008080 6.6e-96 355.1 390 54.6
MD11G1187800 Malus domestica HOM05D006549 ORTHO05D008080 8.6e-96 354.8 389 55.3
Aa31LG3G14820 Aethionema arabicum HOM05D006549 ORTHO05D008080 5.6e-95 352.1 367 56.4
BraA10t44605Z Brassica rapa HOM05D006549 ORTHO05D008080 9.5e-95 351.3 381 52.5
AL6G23210 Arabidopsis lyrata HOM05D006549 ORTHO05D008080 2.1e-94 350.1 365 53.7
arahy.Tifrunner.gnm1.ann1.2W4GIE Arachis hypogaea HOM05D006549 ORTHO05D008080 2.8e-94 349.7 366 56.8
AUR62000165 Chenopodium quinoa HOM05D006549 ORTHO05D008080 2.8e-94 349.7 387 52.5
CANSAT54G0570 Cannabis sativa HOM05D006549 ORTHO05D008080 8.0e-94 348.2 385 56.9
ClCG03G013060 Citrullus lanatus HOM05D006549 ORTHO05D008080 8.0e-94 348.2 399 55.9
Medtr5g009010 Medicago truncatula HOM05D006549 ORTHO05D008080 1.0e-93 347.8 363 55.1
RcHm_v2.0_Chr5g0051211 Rosa chinensis HOM05D006549 ORTHO05D008080 1.0e-93 347.8 391 55.2
Sed0027042 Sechium edule HOM05D006549 ORTHO05D008080 1.8e-93 347.1 375 57.3
THA.LOC104811185 Tarenaya hassleriana HOM05D006549 ORTHO05D008080 1.8e-93 347.1 383 55.4
VMungo1215G3210 Vigna mungo HOM05D006549 ORTHO05D008080 3.1e-93 346.3 367 57.2
AUR62039846 Chenopodium quinoa HOM05D006549 ORTHO05D008080 5.2e-93 345.5 384 54.7
Sabra09G0036200 Salix brachista HOM05D006549 ORTHO05D008080 1.5e-92 344.0 446 49.1
Hund07453 Selenicereus undatus HOM05D006549 ORTHO05D008080 2.0e-92 343.6 360 56.9
A10p25410 Brassica napus HOM05D006549 ORTHO05D008080 2.6e-92 343.2 382 52.4
Eucgr.B03712 Eucalyptus grandis HOM05D006549 ORTHO05D008080 2.6e-92 343.2 392 54.1
AT5G12410 Arabidopsis thaliana HOM05D006549 ORTHO05D008080 7.5e-92 341.7 393 54.5
Glyma.11G015900 Glycine max HOM05D006549 ORTHO05D008080 7.5e-92 341.7 363 57.0
Ciclev10015584m.g Citrus clementina HOM05D006549 ORTHO05D008080 1.7e-91 340.5 379 53.0
TPR.G38023 Trifolium pratense HOM05D006549 ORTHO05D008080 2.2e-91 340.1 365 56.2
HanXRQChr14g0433001 Helianthus annuus HOM05D006549 ORTHO05D008080 2.9e-91 339.7 372 52.4
Sabra16G0155200 Salix brachista HOM05D006549 ORTHO05D008080 3.7e-91 339.3 450 49.1
Aqoxy1G00310 Aquilegia oxysepala HOM05D006549 ORTHO05D008080 1.1e-90 337.8 381 54.6
COL.COLO4_36476 Corchorus olitorius HOM05D006549 ORTHO05D008080 1.4e-90 337.4 385 54.0
CsaV3_1G043000 Cucumis sativus L. HOM05D006549 ORTHO05D008080 1.9e-90 337.0 394 54.6
Os11g0568600 Oryza sativa ssp. japonica HOM05D006549 ORTHO05D008080 7.0e-90 335.1 366 51.1
C03p06560 Brassica napus HOM05D006549 ORTHO05D008080 9.2e-90 334.7 353 53.3
Sp6g31230 Schrenkiella parvula HOM05D006549 ORTHO05D008080 9.2e-90 334.7 395 51.6
Atru.chr3.2633 Acer truncatum HOM05D006549 ORTHO05D008080 1.6e-89 334.0 361 57.6
Lalb_Chr09g0320561 Lupinus albus HOM05D006549 ORTHO05D008080 2.0e-89 333.6 404 50.7
Carub.0006s1091 Capsella rubella HOM05D006549 ORTHO05D008080 2.7e-89 333.2 393 53.4
EL10Ac4g10185 Beta vulgaris HOM05D006549 ORTHO05D008080 4.6e-89 332.4 389 50.1
Prupe.4G256800 Prunus persica HOM05D006549 ORTHO05D008080 6.0e-89 332.0 462 46.8
Glyma.01G226800 Glycine max HOM05D006549 ORTHO05D008080 1.7e-88 330.5 371 56.1
arahy.Tifrunner.gnm1.ann1.9560XR Arachis hypogaea HOM05D006549 ORTHO05D008080 5.0e-88 328.9 361 55.1
Zm00001eb200070 Zea mays HOM05D006549 ORTHO05D008080 8.6e-88 328.2 367 53.1
Thhalv10013724m.g Eutrema salsugineum HOM05D006549 ORTHO05D008080 4.3e-87 325.9 408 50.2
Psat2g186960 Pisum sativum HOM05D000745 ORTHO05D000641 9.5e-87 324.7 367 55.0
CDE08G0181 Ceratophyllum demersum HOM05D006549 ORTHO05D008080 2.8e-86 323.2 357 51.5
Haze_23190 Corylus avellana HOM05D006549 ORTHO05D008080 6.2e-86 322.0 428 49.5
ATR0721G160 Amborella trichopoda HOM05D006549 ORTHO05D008080 3.1e-85 319.7 365 49.9
Ca_24492_v3 Cicer arietinum L. HOM05D000745 ORTHO05D000641 3.4e-84 316.2 358 54.7
QL01p018141 Quercus lobata HOM05D006549 ORTHO05D008080 3.4e-84 316.2 401 51.9
BcaB01g05403 Brassica carinata HOM05D006549 ORTHO05D008080 7.5e-84 315.1 449 45.2
MBI13_g04769_MAGBIO Magnolia biondii HOM05D006549 ORTHO05D008080 9.8e-84 314.7 396 47.0
PSO339G6663 Papaver somniferum HOM05D006549 ORTHO05D008080 7.1e-82 308.5 383 54.8
PSO384G3463 Papaver somniferum HOM05D006549 ORTHO05D008080 2.1e-81 307.0 384 54.9
Lju41A40T23 Lonicera japonica HOM05D006549 ORTHO05D008080 6.0e-81 305.4 321 57.0
Oeu061298.1 Olea europaea HOM05D006549 ORTHO05D008080 3.9e-80 302.8 320 57.5
QL01p018092 Quercus lobata HOM05D006549 ORTHO05D008080 2.2e-75 287.0 343 52.5
Ah.06g193800 Amaranthus hybridus HOM05D006549 ORTHO05D008080 1.4e-74 284.3 319 53.0
LjContig00222g0000121 Lotus japonicus HOM05D006549 ORTHO05D008080 5.4e-74 282.3 441 45.6
SEGI_14205 Sequoiadendron giganteum HOM05D006549 ORTHO05D008080 2.1e-70 270.4 364 45.9
BcaB08g37001 Brassica carinata HOM05D006549 ORTHO05D008080 1.1e-69 268.1 382 45.3
FAN16G0297 Fragaria x ananassa HOM05D006549 ORTHO05D008080 8.1e-62 241.9 162 72.2
TAR633G0410 Trochodendron aralioides HOM05D006549 ORTHO05D008080 2.5e-55 220.3 143 76.9
Hma1.2p1_1043F.1_g251200 Hydrangea macrophylla HOM05D006549 ORTHO05D008080 4.2e-50 203.0 135 71.9
Mapoly0091s0083 Marchantia polymorpha HOM05D006549 ORTHO05D008080 2.1e-46 190.7 361 36.6
SHI46597 Sapria himalayana HOM05D006549 ORTHO05D008080 1.0e-43 181.8 212 47.2
AagrBONN_evm.TU.Sc2ySwM_228.1610 Anthoceros agrestis HOM05D006549 ORTHO05D008080 6.5e-43 179.1 350 34.9
Duzib168G0228 Durio zibethinus HOM05D006549 ORTHO05D008080 1.1e-42 178.3 290 45.9
SMO013G0006 Selaginella moellendorffii HOM05D006549 ORTHO05D008080 2.5e-42 177.2 357 33.6
Pp3c3_2270 Physcomitrium patens HOM05D006549 ORTHO05D008080 3.0e-40 170.2 183 48.6
Cc01_g06170 Coffea canephora HOM05D006549 ORTHO05D008080 3.9e-40 169.9 110 76.4
PRCOL_00001563 Prasinoderma coloniale HOM05D006549 ORTHO05D008080 1.8e-29 134.4 179 44.7
CBR_g300 Chara braunii HOM05D006549 ORTHO05D008080 2.9e-27 127.1 270 30.4
MCO09G159 Micromonas commoda HOM05D006549 ORTHO05D008080 2.0e-23 114.4 205 37.1
HPP92_011577 Vanilla planifolia HOM05D006549 ORTHO05D008080 1.4e-21 108.2 224 37.5
MELO3C029487.2 Cucumis melo HOM05D006549 ORTHO05D008080 5.0e-19 99.8 64 75.0
MELO3C015170.2 Cucumis melo HOM05D006549 ORTHO05D008080 1.4e-18 98.2 162 51.2
Cpa.g.sc84.3 Carica papaya HOM05D006549 ORTHO05D008080 4.2e-18 96.7 56 83.9
Cre14.g629550 Chlamydomonas reinhardtii HOM05D006549 ORTHO05D008080 1.6e-17 94.7 178 33.7
BolC3t13160H Brassica oleracea HOM05D006549 ORTHO05D008080 4.4e-15 86.7 90 48.9
CSS0036252 Camellia sinensis var. sinensis HOM05D006549 ORTHO05D008080 2.2e-14 84.3 64 68.8
Cpa.g.c41750 Carica papaya HOM05D006549 ORTHO05D008080 3.8e-11 73.6 65 61.5


User provided reference genes

Program Settings