Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g065040.2 Solanum lycopersicum HOM05D002956 ORTHO05D008031 6.6e-102 374.0 186 100.0
PGSC0003DMG400031243 Solanum tuberosum HOM05D002956 ORTHO05D008031 6.2e-84 314.3 186 88.2
Peaxi162Scf00004g04220 Petunia axillaris HOM05D002956 ORTHO05D008031 8.7e-78 293.9 187 82.4
Nitab4.5_0007012g0050 Nicotiana tabacum HOM05D002956 ORTHO05D008031 1.6e-76 289.7 208 74.0
Gohir.A07G121300 Gossypium hirsutum HOM05D002956 ORTHO05D008031 4.2e-64 248.4 182 66.5
ECA233G6038 Erigeron canadensis HOM05D002956 ORTHO05D008031 3.6e-63 245.4 210 60.5
Gohir.D07G125600 Gossypium hirsutum HOM05D002956 ORTHO05D008031 7.9e-63 244.2 182 65.9
Nn7g36838 Nelumbo nucifera HOM05D002956 ORTHO05D008031 2.3e-62 242.7 182 66.5
CiPaw.14G111000 Carya illinoinensis HOM05D002956 ORTHO05D008031 3.0e-62 242.3 182 65.9
Prupe.4G260400 Prunus persica HOM05D002956 ORTHO05D008031 8.8e-62 240.7 182 63.7
BcaB01g03033 Brassica carinata HOM05D002956 ORTHO05D008031 2.5e-61 239.2 183 65.6
CARHR118990 Cardamine hirsuta HOM05D002956 ORTHO05D008031 4.8e-60 235.0 186 65.1
Manes.02G137300 Manihot esculenta HOM05D002956 ORTHO05D008031 4.8e-60 235.0 184 64.1
PSO384G3941 Papaver somniferum HOM05D002956 ORTHO05D008031 4.8e-60 235.0 182 61.5
PGR119G0612 Punica granatum HOM05D002956 ORTHO05D008031 4.8e-60 235.0 182 64.3
Sopen11g024800 Solanum pennellii HOM05D002956 ORTHO05D008031 6.3e-60 234.6 118 96.6
AL4G20000 Arabidopsis lyrata HOM05D002956 ORTHO05D008031 1.4e-59 233.4 186 64.5
Duzib150G0193 Durio zibethinus HOM05D002956 ORTHO05D008031 1.4e-59 233.4 192 61.5
Lalb_Chr15g0078511 Lupinus albus HOM05D002956 ORTHO05D008031 3.1e-59 232.3 183 65.0
C03p32170 Brassica napus HOM05D002956 ORTHO05D008031 5.3e-59 231.5 182 65.9
Thhalv10002083m.g Eutrema salsugineum HOM05D002956 ORTHO05D008031 5.3e-59 231.5 181 64.1
Potri.009G068400 Populus trichocarpa HOM05D002956 ORTHO05D008031 9.1e-59 230.7 181 62.4
DCAR_006894 Daucus carota HOM05D002956 ORTHO05D008031 2.0e-58 229.6 183 61.7
Eucgr.J00675 Eucalyptus grandis HOM05D002956 ORTHO05D008031 2.6e-58 229.2 181 63.5
BcaC01g04913 Brassica carinata HOM05D002956 ORTHO05D008031 3.4e-58 228.8 182 65.4
A03p26830 Brassica napus HOM05D002956 ORTHO05D008031 3.4e-58 228.8 182 64.8
BolC3t15559H Brassica oleracea HOM05D002956 ORTHO05D008031 5.9e-58 228.0 185 65.4
BraA03t11895Z Brassica rapa HOM05D002956 ORTHO05D008031 1.0e-57 227.3 185 64.9
FvH4_3g28160 Fragaria vesca HOM05D002956 ORTHO05D008031 1.7e-57 226.5 182 61.0
Sed0014482 Sechium edule HOM05D002956 ORTHO05D008031 2.2e-57 226.1 202 56.4
Sp4g08660 Schrenkiella parvula HOM05D002956 ORTHO05D008031 2.9e-57 225.7 182 63.7
TWI31G0384 Tripterygium wilfordii HOM05D002956 ORTHO05D008031 2.9e-57 225.7 182 64.8
HanXRQChr12g0380421 Helianthus annuus HOM05D002956 ORTHO05D008031 6.5e-57 224.6 222 53.6
THA.LOC104826460 Tarenaya hassleriana HOM05D002956 ORTHO05D008031 1.1e-56 223.8 182 63.7
Cc01_g06320 Coffea canephora HOM05D002956 ORTHO05D008031 1.4e-56 223.4 182 64.8
Dinv36148 Davidia involucrata HOM05D002956 ORTHO05D008031 2.5e-56 222.6 182 64.3
TPR.G11875 Trifolium pratense HOM05D002757 ORTHO05D008031 5.5e-56 221.5 183 61.2
Aqoxy2G00442 Aquilegia oxysepala HOM05D002956 ORTHO05D008031 2.7e-55 219.2 182 59.9
CSS0006448 Camellia sinensis var. sinensis HOM05D002956 ORTHO05D008031 2.7e-55 219.2 210 55.7
Sabra09G0051500 Salix brachista HOM05D002956 ORTHO05D008031 4.7e-55 218.4 199 55.3
Glyma.08G154800 Glycine max HOM05D002956 ORTHO05D008031 6.1e-55 218.0 183 58.5
Nitab4.5_0004018g0060 Nicotiana tabacum HOM05D002956 ORTHO05D008031 6.1e-55 218.0 186 65.6
Lj6g0022582 Lotus japonicus HOM05D002956 ORTHO05D008031 3.0e-54 215.7 183 57.9
ATR0307G044 Amborella trichopoda HOM05D002956 ORTHO05D008031 3.9e-54 215.3 199 56.3
Phvul.005G020600 Phaseolus vulgaris HOM05D002956 ORTHO05D008031 5.1e-54 214.9 183 59.6
CANSAT54G1478 Cannabis sativa HOM05D002956 ORTHO05D008031 8.8e-54 214.2 182 61.0
Cpa.g.sc34.183 Carica papaya HOM05D002956 ORTHO05D008031 8.8e-54 214.2 182 60.4
Hund07424 Selenicereus undatus HOM05D002956 ORTHO05D008031 1.1e-53 213.8 218 53.7
VMungo1080G1429 Vigna mungo HOM05D002956 ORTHO05D008031 1.1e-53 213.8 187 59.9
Actinidia06980 Actinidia chinensis HOM05D002956 ORTHO05D008031 7.4e-53 211.1 182 59.3
Haze_23261 Corylus avellana HOM05D002956 ORTHO05D008031 1.1e-51 207.2 182 58.8
Ciclev10018203m.g Citrus clementina HOM05D002956 ORTHO05D008031 4.1e-51 205.3 182 58.8
SEGI_28475 Sequoiadendron giganteum HOM05D002956 ORTHO05D008031 7.0e-51 204.5 182 58.8
Os07g0641600 Oryza sativa ssp. japonica HOM05D002956 ORTHO05D008031 2.0e-50 203.0 182 56.6
QL01p016670 Quercus lobata HOM05D002956 ORTHO05D008031 2.0e-50 203.0 203 55.7
MBI19_g19211_MAGBIO Magnolia biondii HOM05D002956 ORTHO05D008031 5.9e-50 201.4 216 53.7
FAN16G1792 Fragaria x ananassa HOM05D002956 ORTHO05D008031 2.7e-47 192.6 182 54.4
Lsat_1_v5_gn_5_63100 Lactuca sativa HOM05D002956 ORTHO05D008031 3.0e-46 189.1 200 53.0
COL.COLO4_07384 Corchorus olitorius HOM05D002956 ORTHO05D008031 5.2e-46 188.3 176 54.5
SGA_v2.0_scaffold26G11398 Striga asiatica HOM05D002956 ORTHO05D008031 5.2e-46 188.3 182 55.5
ClCG02G022710 Citrullus lanatus HOM05D002956 ORTHO05D008031 1.5e-45 186.8 200 51.5
PSO339G2954 Papaver somniferum HOM05D002956 ORTHO05D008031 4.8e-44 181.8 144 61.1
Lj2C795T0 Lonicera japonica HOM05D002956 ORTHO05D008031 1.2e-42 177.2 181 51.9
Ca_25980_v3 Cicer arietinum L. HOM05D002956 ORTHO05D008031 1.1e-40 170.6 185 50.8
arahy.Tifrunner.gnm1.ann1.XLU01S Arachis hypogaea HOM05D002956 ORTHO05D008031 2.1e-39 166.4 336 35.1
MSTRG.12436 Avicennia marina HOM05D002956 ORTHO05D008031 8.0e-39 164.5 106 75.5
Rhsim13G0206100 Rhododendron simsii HOM05D002956 ORTHO05D008031 1.8e-38 163.3 182 52.7
Gorai.001G135400 Gossypium raimondii HOM05D002956 ORTHO05D008031 6.7e-38 161.4 109 67.0
Thecc.09G246000 Theobroma cacao HOM05D002956 ORTHO05D008031 6.7e-38 161.4 106 67.9
CAN.G468.2 Capsicum annuum HOM05D002956 ORTHO05D008031 8.8e-38 161.0 120 70.0
AUR62000217 Chenopodium quinoa HOM05D002956 ORTHO05D008031 7.5e-37 157.9 188 48.9
unitig_22.g6189 Utricularia gibba HOM05D002956 ORTHO05D008031 2.2e-36 156.4 157 52.9
TAR369G0726 Trochodendron aralioides HOM05D002956 ORTHO05D008031 2.8e-36 156.0 106 69.8
vmacro04047 Vaccinium macrocarpon HOM05D002956 ORTHO05D008031 2.8e-36 156.0 135 62.2
Aa31LG5G8970 Aethionema arabicum HOM05D002956 ORTHO05D008031 3.7e-36 155.6 182 48.9
Sc06g0004740 Simmondsia chinensis HOM05D002956 ORTHO05D008031 4.8e-36 155.2 106 70.8
AT2G26810 Arabidopsis thaliana HOM05D002956 ORTHO05D008031 1.4e-35 153.7 106 69.8
CDE04G0360 Ceratophyllum demersum HOM05D002956 ORTHO05D008031 1.8e-35 153.3 182 48.4
MD00G1134600 Malus domestica HOM05D002956 ORTHO05D008031 5.3e-35 151.8 104 70.2
Psat5g191880 Pisum sativum HOM05D002956 ORTHO05D008031 1.2e-34 150.6 183 47.0
arahy.Tifrunner.gnm1.ann1.1Z9FJQ Arachis hypogaea HOM05D002956 ORTHO05D008031 1.6e-34 150.2 243 39.9
GSVIVG01037341001 Vitis vinifera HOM05D002956 ORTHO05D008031 1.6e-34 150.2 109 67.9
Carub.0004s0727 Capsella rubella HOM05D002956 ORTHO05D008031 2.0e-34 149.8 106 68.9
CAN.G1049.9 Capsicum annuum HOM05D002956 ORTHO05D008031 7.7e-34 147.9 108 74.1
Pp3c3_3430 Physcomitrium patens HOM05D002956 ORTHO05D008031 5.0e-33 145.2 184 45.7
FAN11G2127 Fragaria x ananassa HOM05D002956 ORTHO05D008031 8.5e-33 144.4 111 63.1
Mapoly0001s0305 Marchantia polymorpha HOM05D002956 ORTHO05D008031 3.2e-32 142.5 182 43.4
EL10Ac4g10091 Beta vulgaris HOM05D002956 ORTHO05D008031 5.5e-32 141.7 106 66.0
Oeu061696.1 Olea europaea HOM05D002956 ORTHO05D008031 7.2e-32 141.4 135 57.8
Medtr3g045720 Medicago truncatula HOM05D002956 ORTHO05D008031 9.4e-32 141.0 107 63.6
FAN25G3179 Fragaria x ananassa HOM05D002956 ORTHO05D008031 2.0e-29 133.3 181 42.5
Psat4g143640 Pisum sativum HOM05D002956 ORTHO05D008031 2.6e-29 132.9 130 56.9
AagrBONN_evm.TU.Sc2ySwM_228.3973 Anthoceros agrestis HOM05D002956 ORTHO05D008031 1.6e-26 123.6 109 56.0
FAN25G0087 Fragaria x ananassa HOM05D002956 ORTHO05D008031 1.2e-23 114.0 181 37.6
Zm00001eb329010 Zea mays HOM05D002956 ORTHO05D008031 2.8e-23 112.8 84 61.9
Peaxi162Scf00080g00812 Petunia axillaris HOM05D002956 ORTHO05D008031 4.7e-23 112.1 112 57.1
Zm00001eb110260 Zea mays HOM05D002956 ORTHO05D008031 1.2e-21 107.5 91 57.1
GSVIVG01037340001 Vitis vinifera HOM05D002956 ORTHO05D008031 1.6e-18 97.1 71 69.0
Ah.06g194770 Amaranthus hybridus HOM05D002956 ORTHO05D008031 2.7e-18 96.3 108 50.9
Carub.0004s0726 Capsella rubella HOM05D002956 ORTHO05D008031 5.9e-18 95.1 71 64.8
AUR62006562 Chenopodium quinoa HOM05D002956 ORTHO05D008031 5.9e-18 95.1 249 33.3
Psat4g060320 Pisum sativum HOM05D002956 ORTHO05D008031 5.9e-18 95.1 80 58.8
CsaV3_6G038830 Cucumis sativus L. HOM05D002956 ORTHO05D008031 1.0e-17 94.4 73 60.3
SMO270G0089 Selaginella moellendorffii HOM05D055329 ORTHO05D008031 1.9e-16 90.1 121 42.1
RcHm_v2.0_Chr5g0050251 Rosa chinensis HOM05D002956 ORTHO05D008031 1.6e-15 87.0 49 77.6
MELO3C014548.2 Cucumis melo HOM05D002956 ORTHO05D008031 2.1e-15 86.7 49 75.5
Migut.N02382 Erythranthe guttata HOM05D002956 ORTHO05D008031 6.1e-15 85.1 49 77.6
CBR_g39846 Chara braunii HOM05D002956 ORTHO05D008031 3.1e-14 82.8 308 24.0
Atru.chr3.3008 Acer truncatum HOM05D002956 ORTHO05D008031 5.2e-14 82.0 57 63.2
SEGI_15484 Sequoiadendron giganteum HOM05D002956 ORTHO05D008031 5.2e-14 82.0 49 75.5
HPP92_001025 Vanilla planifolia HOM05D002956 ORTHO05D008031 1.5e-13 80.5 49 71.4
Psat2g099480 Pisum sativum HOM05D002956 ORTHO05D008031 9.8e-13 77.8 69 58.0
Psat2g099560 Pisum sativum HOM05D001082 ORTHO05D001538 9.8e-13 77.8 69 58.0
Psat5g130120 Pisum sativum HOM05D001082 ORTHO05D001538 1.3e-12 77.4 68 58.8
ATR0716G012 Amborella trichopoda HOM05D001920 ORTHO05D004895 9.2e-11 71.2 156 33.3
Ca_13119_v3 Cicer arietinum L. HOM05D001920 ORTHO05D004895 1.2e-10 70.9 166 31.3
PSO210G7567 Papaver somniferum HOM05D001920 ORTHO05D004895 1.6e-10 70.5 164 27.4
TPR.G13113 Trifolium pratense HOM05D001920 ORTHO05D004895 2.7e-10 69.7 183 29.5
Medtr1g015770 Medicago truncatula HOM05D001920 ORTHO05D004895 3.5e-10 69.3 185 29.2
PSO210G1339 Papaver somniferum HOM05D001920 ORTHO05D004895 1.0e-09 67.8 164 27.4
Thecc.09G057600 Theobroma cacao HOM05D001920 ORTHO05D004895 1.0e-09 67.8 163 32.5
FAN20G0594 Fragaria x ananassa HOM05D001920 ORTHO05D005408 1.7e-09 67.0 162 30.2
FAN27G2437 Fragaria x ananassa HOM05D001920 ORTHO05D005408 2.3e-09 66.6 162 30.2
PGR044G1960 Punica granatum HOM05D001920 ORTHO05D004895 2.3e-09 66.6 166 28.3
Lsat_1_v5_gn_4_71781 Lactuca sativa HOM05D001920 ORTHO05D004895 3.0e-09 66.2 129 34.9
Lj7C259G6 Lonicera japonica HOM05D001920 ORTHO05D004895 3.9e-09 65.9 168 29.2
FvH4_2g31511 Fragaria vesca HOM05D001920 ORTHO05D004895 5.0e-09 65.5 162 29.6
FAN15G2558 Fragaria x ananassa HOM05D001920 ORTHO05D005408 5.0e-09 65.5 162 29.6
GSVIVG01012573001 Vitis vinifera HOM05D001920 ORTHO05D004895 5.0e-09 65.5 165 29.7
Mapoly0046s0004 Marchantia polymorpha HOM05D001920 ORTHO05D004895 6.6e-09 65.1 161 27.3
MELO3C016884.2 Cucumis melo HOM05D001920 ORTHO05D004895 8.6e-09 64.7 165 28.5
Haze_18152 Corylus avellana HOM05D001920 ORTHO05D004895 1.1e-08 64.3 157 29.3
Gohir.D06G085100 Gossypium hirsutum HOM05D001920 ORTHO05D004895 1.1e-08 64.3 163 31.3
Gorai.010G098400 Gossypium raimondii HOM05D001920 ORTHO05D004895 1.1e-08 64.3 163 31.3
MELO3C020642.2 Cucumis melo HOM05D002956 ORTHO05D008031 1.5e-08 63.9 55 56.4
Lj7C264T3 Lonicera japonica HOM05D001920 ORTHO05D004895 1.5e-08 63.9 165 31.5
SalBow4G0898 Salvia bowleyana HOM05D001920 ORTHO05D004895 1.5e-08 63.9 181 28.7
SGA_v2.0_scaffold20G09202 Striga asiatica HOM05D001920 ORTHO05D004895 1.5e-08 63.9 163 28.2
Duzib168G0495 Durio zibethinus HOM05D001920 ORTHO05D004895 1.9e-08 63.5 161 29.8
Nn8g38776 Nelumbo nucifera HOM05D001920 ORTHO05D004895 2.5e-08 63.2 166 27.7
SHI18719 Sapria himalayana HOM05D001920 ORTHO05D004895 2.5e-08 63.2 164 28.7
MD08G1065700 Malus domestica HOM05D001920 ORTHO05D004895 3.3e-08 62.8 165 27.9
TAR626G1466 Trochodendron aralioides HOM05D001920 ORTHO05D004895 3.3e-08 62.8 167 31.1
MSTRG.11648 Avicennia marina HOM05D001920 ORTHO05D004895 4.3e-08 62.4 167 29.3
Cc08_g10920 Coffea canephora HOM05D001920 ORTHO05D004895 4.3e-08 62.4 169 28.4
Lalb_Chr14g0366411 Lupinus albus HOM05D001920 ORTHO05D004895 4.3e-08 62.4 166 27.1
GSVIVG01012560001 Vitis vinifera HOM05D001920 ORTHO05D004895 4.3e-08 62.4 165 29.1
Ah.10g034110 Amaranthus hybridus HOM05D001920 ORTHO05D004895 7.3e-08 61.6 166 27.7
CANSAT25G1922 Cannabis sativa HOM05D001920 ORTHO05D004895 7.3e-08 61.6 166 26.5
Ciclev10007880m.g Citrus clementina HOM05D001920 ORTHO05D004895 7.3e-08 61.6 166 28.9
SEGI_34471 Sequoiadendron giganteum HOM05D001920 ORTHO05D004895 7.3e-08 61.6 168 28.6
arahy.Tifrunner.gnm1.ann1.Z4JLGK Arachis hypogaea HOM05D001920 ORTHO05D004895 9.5e-08 61.2 165 27.9
CsaV3_4G035790 Cucumis sativus L. HOM05D001920 ORTHO05D004895 1.2e-07 60.8 165 28.5
Manes.16G082500 Manihot esculenta HOM05D001920 ORTHO05D004895 1.2e-07 60.8 165 27.3
arahy.Tifrunner.gnm1.ann1.ZYB4F6 Arachis hypogaea HOM05D001920 ORTHO05D004895 1.6e-07 60.5 165 27.9
Oeu018622.1 Olea europaea HOM05D001920 ORTHO05D004895 1.6e-07 60.5 163 28.2
MCO09G596 Micromonas commoda HOM05D002956 ORTHO05D008031 2.1e-07 60.1 99 32.3
Prupe.1G408900 Prunus persica HOM05D001920 ORTHO05D004895 2.1e-07 60.1 126 31.7
Cfa017979 Carpinus fangiana HOM05D001920 ORTHO05D005408 2.8e-07 59.7 163 28.2
Sed0026712 Sechium edule HOM05D001920 ORTHO05D004895 2.8e-07 59.7 162 30.2
TWI34G1198 Tripterygium wilfordii HOM05D001920 ORTHO05D004895 2.8e-07 59.7 165 27.3
HPP92_005010 Vanilla planifolia HOM05D001920 ORTHO05D004895 2.8e-07 59.7 167 27.5
RcHm_v2.0_Chr6g0311271 Rosa chinensis HOM05D001920 ORTHO05D004895 3.6e-07 59.3 162 27.8
Hma1.2p1_0196F.1_g084790 Hydrangea macrophylla HOM05D001920 ORTHO05D004895 4.7e-07 58.9 163 27.6
Zm00001eb003510 Zea mays HOM05D001920 ORTHO05D004895 4.7e-07 58.9 162 27.2
DCAR_004400 Daucus carota HOM05D001920 ORTHO05D004895 6.2e-07 58.5 168 27.4
MBI11_g07545_MAGBIO Magnolia biondii HOM05D001920 ORTHO05D004895 1.4e-06 57.4 157 28.7
Dinv12436 Davidia involucrata HOM05D001920 ORTHO05D004895 1.8e-06 57.0 163 27.6
Actinidia25711 Actinidia chinensis HOM05D001920 ORTHO05D004895 2.3e-06 56.6 166 27.7
Psat0s4720g0080 Pisum sativum HOM05D002956 ORTHO05D008031 2.3e-06 56.6 60 48.3
Carub.0001s3487 Capsella rubella HOM05D001920 ORTHO05D004895 4.0e-06 55.8 166 27.7
Mapoly0041s0084 Marchantia polymorpha HOM05D006745 ORTHO05D008449 4.0e-06 55.8 142 31.7
COL.COLO4_21091 Corchorus olitorius HOM05D001920 ORTHO05D004895 5.2e-06 55.5 162 27.8
TWI32G0956 Tripterygium wilfordii HOM05D001920 ORTHO05D004895 6.8e-06 55.1 165 27.9
MD00G1134700 Malus domestica HOM05D002956 ORTHO05D008031 8.9e-06 54.7 40 65.0


User provided reference genes

Program Settings