Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g063620.2 Solanum lycopersicum HOM05D003783 ORTHO05D004568 9.1e-167 590.1 288 100.0
Solyc00g049210.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 4.4e-145 518.1 274 93.4
Solyc00g500249.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.5e-129 466.5 287 82.6
Solyc00g500348.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.5e-129 466.5 287 82.6
DCAR_032429 Daucus carota HOM05D003783 ORTHO05D004568 2.3e-125 452.6 279 83.9
SabraMtG0000900 Salix brachista HOM05D003783 ORTHO05D004568 4.3e-124 448.4 290 80.3
Gorai.013G137500 Gossypium raimondii HOM05D003783 ORTHO05D004568 1.6e-123 446.4 290 78.3
Gorai.001G160200 Gossypium raimondii HOM05D003783 ORTHO05D004568 8.1e-123 444.1 281 80.4
arahy.Tifrunner.gnm1.ann1.WX3135 Arachis hypogaea HOM05D003783 ORTHO05D004568 4.0e-122 441.8 276 82.2
Nn1g09973 Nelumbo nucifera HOM05D003783 ORTHO05D004568 7.6e-121 437.6 277 81.6
Nn1g10116 Nelumbo nucifera HOM05D003783 ORTHO05D004568 7.6e-121 437.6 277 81.6
RcHm_v2.0_Chr6g0258021 Rosa chinensis HOM05D003783 ORTHO05D004568 1.7e-120 436.4 279 80.6
RcHm_v2.0_MTg0498851 Rosa chinensis HOM05D003783 ORTHO05D004568 1.7e-120 436.4 279 80.6
LjContig00315g0021149 Lotus japonicus HOM05D003783 ORTHO05D004568 3.7e-120 435.3 276 81.5
LjContig00439g0010231 Lotus japonicus HOM05D003783 ORTHO05D004568 3.7e-120 435.3 276 81.5
CANSAT16G0001 Cannabis sativa HOM05D003783 ORTHO05D004568 4.9e-120 434.9 277 81.6
BNapus_Darmor_BZH_scaffold_234p00030 Brassica napus HOM05D003783 ORTHO05D004568 1.4e-119 433.3 277 79.4
BraSC177t45753Z Brassica rapa HOM05D003783 ORTHO05D004568 1.4e-119 433.3 277 79.4
MBI05_g05347_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 3.2e-119 432.2 280 80.7
CARHR283110 Cardamine hirsuta HOM05D003783 ORTHO05D004568 7.1e-119 431.0 277 79.4
AL3G44640 Arabidopsis lyrata HOM05D003783 ORTHO05D004568 2.1e-118 429.5 277 79.1
Zm00001eb434740 Zea mays HOM05D003783 ORTHO05D004568 2.1e-118 429.5 292 77.4
Zm00001eb436360 Zea mays HOM05D003783 ORTHO05D004568 2.1e-118 429.5 292 77.4
Zm00001eb437010 Zea mays HOM05D003783 ORTHO05D004568 2.1e-118 429.5 292 77.4
Zm00001eb438050 Zea mays HOM05D003783 ORTHO05D004568 2.1e-118 429.5 292 77.4
Zm00001eb438170 Zea mays HOM05D003783 ORTHO05D004568 2.1e-118 429.5 292 77.4
Zm00001eb438820 Zea mays HOM05D003783 ORTHO05D004568 2.1e-118 429.5 292 77.4
Sp3g25620 Schrenkiella parvula HOM05D003783 ORTHO05D004568 2.7e-118 429.1 277 79.4
ATMG00830 Arabidopsis thaliana HOM05D003783 ORTHO05D004568 6.0e-118 427.9 277 78.7
Psat4g179160 Pisum sativum HOM05D003783 ORTHO05D004568 6.0e-118 427.9 276 80.4
Lsat_1_v5_gn_5_16100 Lactuca sativa HOM05D003783 ORTHO05D004568 1.7e-117 426.4 276 81.2
Lalb_Chr00c29g0408271 Lupinus albus HOM05D003783 ORTHO05D004568 3.0e-117 425.6 276 79.7
HanXRQChr04g0109071 Helianthus annuus HOM05D003783 ORTHO05D004568 6.6e-117 424.5 276 80.1
HanXRQChr08g0236011 Helianthus annuus HOM05D003783 ORTHO05D004568 6.6e-117 424.5 276 80.1
HanXRQChr14g0434351 Helianthus annuus HOM05D003783 ORTHO05D004568 6.6e-117 424.5 276 80.1
HanXRQMTg0579571 Helianthus annuus HOM05D003783 ORTHO05D004568 6.6e-117 424.5 276 80.1
Ah.10g028070 Amaranthus hybridus HOM05D003783 ORTHO05D004568 9.6e-116 420.6 279 78.9
SGA_v2.0_scaffold245G44749 Striga asiatica HOM05D003783 ORTHO05D004568 1.2e-115 420.2 277 79.1
Ah.01g011790 Amaranthus hybridus HOM05D003783 ORTHO05D004568 2.8e-115 419.1 279 78.5
HanXRQChr09g0246391 Helianthus annuus HOM05D003783 ORTHO05D004568 8.1e-115 417.5 276 78.3
Sc11g0004390 Simmondsia chinensis HOM05D003783 ORTHO05D004568 6.8e-114 414.5 292 75.3
CsaV3_UNG210090 Cucumis sativus L. HOM05D003783 ORTHO05D004568 1.2e-113 413.7 276 77.9
SHI54813 Sapria himalayana HOM05D003783 ORTHO05D004568 1.6e-110 403.3 281 76.5
CDE02G3531 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 1.1e-108 397.1 280 76.1
Nn1g10045 Nelumbo nucifera HOM05D003783 ORTHO05D004568 7.3e-108 394.4 255 79.6
Medtr0212s0020 Medicago truncatula HOM05D003783 ORTHO05D004568 2.1e-107 392.9 283 74.6
SHI54470 Sapria himalayana HOM05D003783 ORTHO05D004568 7.6e-105 384.4 281 74.4
Nn3g20873 Nelumbo nucifera HOM05D003783 ORTHO05D004568 2.9e-104 382.5 244 80.7
MD14G1092300 Malus domestica HOM05D003783 ORTHO05D004568 3.8e-104 382.1 279 73.5
Lsat_1_v5_gn_7_99780 Lactuca sativa HOM05D003783 ORTHO05D004568 3.0e-93 345.9 276 68.5
Psat6g195120 Pisum sativum HOM05D003783 ORTHO05D004568 2.5e-92 342.8 262 70.6
BolSC28t60416H Brassica oleracea HOM05D003783 ORTHO05D004568 1.1e-90 337.4 245 71.0
HanXRQChr01g0003471 Helianthus annuus HOM05D003783 ORTHO05D004568 5.5e-79 298.5 276 60.5
HanXRQChr11g0334171 Helianthus annuus HOM05D003783 ORTHO05D004568 7.2e-79 298.1 202 75.7
HanXRQChr17g0544021 Helianthus annuus HOM05D003783 ORTHO05D004568 7.2e-79 298.1 202 75.7
Aqoxy163s002 Aquilegia oxysepala HOM05D003783 ORTHO05D004568 9.3e-79 297.7 204 76.0
ECA039G0028 Erigeron canadensis HOM05D003783 ORTHO05D004568 3.0e-77 292.7 204 77.0
Psat7g150720 Pisum sativum HOM05D003783 ORTHO05D004568 2.6e-73 279.6 282 57.8
Nitab4.5_0000592g0140 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.2e-72 276.6 274 58.4
SHI54253 Sapria himalayana HOM05D003783 ORTHO05D004568 2.2e-72 276.6 208 73.6
CAN.G1439.7 Capsicum annuum HOM05D003783 ORTHO05D004568 9.4e-71 271.2 161 81.4
SHI36895 Sapria himalayana HOM05D003783 ORTHO05D004568 3.7e-67 259.2 210 71.4
Thhalv10029166m.g Eutrema salsugineum HOM05D003783 ORTHO05D004568 6.3e-67 258.5 274 54.7
arahy.Tifrunner.gnm1.ann1.BUQ0M3 Arachis hypogaea HOM05D003783 ORTHO05D004568 5.5e-63 245.4 170 78.8
PGSC0003DMG400016897 Solanum tuberosum HOM05D003783 ORTHO05D004568 2.6e-57 226.5 124 91.1
GSVIVG01006218001 Vitis vinifera HOM05D003783 ORTHO05D004568 5.9e-57 225.3 274 48.9
CARHR287240 Cardamine hirsuta HOM05D003783 ORTHO05D004568 1.3e-56 224.2 149 79.2
GSVIVG01004964001 Vitis vinifera HOM05D003783 ORTHO05D004568 5.0e-56 222.2 274 48.5
BraSC224t45815Z Brassica rapa HOM05D003783 ORTHO05D004568 9.1e-50 201.4 153 66.0
BolSC28t60383H Brassica oleracea HOM05D003783 ORTHO05D004568 1.2e-49 201.1 130 74.6
Nitab4.5_0010936g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.2e-49 201.1 156 71.8
BolC1t03458H Brassica oleracea HOM05D003783 ORTHO05D004568 5.5e-47 192.2 145 66.9
TPR.G885 Trifolium pratense HOM05D003783 ORTHO05D004568 3.2e-39 166.4 106 82.1
CDE02G1256 Ceratophyllum demersum HOM05D003783 ORTHO05D004568 3.0e-37 159.8 189 55.6
Sopen05g012690 Solanum pennellii HOM05D003783 ORTHO05D004568 1.4e-34 151.0 82 91.5
Peaxi162Scf00707g00004 Petunia axillaris HOM05D003783 ORTHO05D004568 1.8e-34 150.6 82 92.7
Peaxi162Scf02040g00001 Petunia axillaris HOM05D003783 ORTHO05D004568 1.8e-34 150.6 82 92.7
Lsat_1_v5_gn_4_3660 Lactuca sativa HOM05D003783 ORTHO05D001069 7.0e-34 148.7 113 69.9
CAN.G497.18 Capsicum annuum HOM05D003783 ORTHO05D004568 9.2e-34 148.3 82 91.5
Dinv06713 Davidia involucrata HOM05D003783 ORTHO05D004568 2.9e-32 143.3 85 87.1
Nitab4.5_0000172g1380 Nicotiana tabacum HOM05D003783 ORTHO05D004568 5.0e-32 142.5 137 59.9
DCAR_031805 Daucus carota HOM05D003783 ORTHO05D004568 1.9e-31 140.6 85 88.2
DCAR_032038 Daucus carota HOM05D003783 ORTHO05D004568 1.9e-31 140.6 85 88.2
Nitab4.5_0004300g0270 Nicotiana tabacum HOM05D003783 ORTHO05D004568 1.9e-31 140.6 82 86.6
Nitab4.5_0002888g0030 Nicotiana tabacum HOM05D003783 ORTHO05D004568 2.5e-31 140.2 82 87.8
SalBow1G3009 Salvia bowleyana HOM05D003783 ORTHO05D004568 3.3e-31 139.8 85 87.1
BcaC09g49594 Brassica carinata HOM05D003783 ORTHO05D004568 9.5e-31 138.3 85 85.9
BraSC77t46622Z Brassica rapa HOM05D003783 ORTHO05D004568 9.5e-31 138.3 85 85.9
AUR62042333 Chenopodium quinoa HOM05D003783 ORTHO05D004568 3.6e-30 136.3 85 84.7
Aa31csc549G20 Aethionema arabicum HOM05D003783 ORTHO05D004568 8.0e-30 135.2 85 84.7
RhsimMtG0005400 Rhododendron simsii HOM05D003783 ORTHO05D004568 8.0e-30 135.2 85 84.7
BcaC09g49580 Brassica carinata HOM05D003783 ORTHO05D004568 2.6e-28 130.2 84 82.1
CAN.G124.8 Capsicum annuum HOM05D003783 ORTHO05D004568 2.6e-28 130.2 82 79.3
SEGI_30299 Sequoiadendron giganteum HOM05D003783 ORTHO05D004568 2.2e-27 127.1 209 43.1
MBI19_g47479_MAGBIO Magnolia biondii HOM05D003783 ORTHO05D004568 2.0e-25 120.6 79 79.7
Nitab4.5_0011099g0010 Nicotiana tabacum HOM05D003783 ORTHO05D004568 7.3e-23 112.1 62 87.1
Sc22g0004100 Simmondsia chinensis HOM05D003783 ORTHO05D004568 4.7e-22 109.4 79 70.9
Eucgr.C03075 Eucalyptus grandis HOM05D003783 ORTHO05D004568 6.2e-22 109.0 82 73.2
Ah.00g237920 Amaranthus hybridus HOM05D003783 ORTHO05D004568 1.0e-21 108.2 63 84.1
Solyc02g050290.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.0e-21 108.2 57 93.0
Lalb_Chr22g0357831 Lupinus albus HOM05D003783 ORTHO05D004568 7.5e-20 102.1 70 68.6
CAN.G1576.3 Capsicum annuum HOM05D003783 ORTHO05D004568 2.2e-19 100.5 63 79.4
Solyc10g048130.3 Solanum lycopersicum HOM05D003783 ORTHO05D004568 6.4e-19 99.0 175 39.4
SHI26670 Sapria himalayana HOM05D003783 ORTHO05D004568 4.1e-18 96.3 70 67.1
CAN.G1001.41 Capsicum annuum HOM05D003783 ORTHO05D004568 3.9e-16 89.7 47 89.4
ATR1173G002 Amborella trichopoda HOM05D003783 ORTHO05D004568 9.5e-15 85.1 54 75.9
C05p22550 Brassica napus HOM05D003783 ORTHO05D004568 4.0e-13 79.7 53 83.0
Solyc12g035910.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 1.2e-12 78.2 49 77.6
BolC5t30954H Brassica oleracea HOM05D003783 ORTHO05D004568 2.9e-11 73.6 53 79.2
Nitab4.5_0005837g0060 Nicotiana tabacum HOM05D000102 ORTHO05D000138 3.2e-10 70.1 40 77.5
BcaC01g03561 Brassica carinata HOM05D025145 ORTHO05D016019 2.7e-09 67.0 52 67.3
SHI11506 Sapria himalayana HOM05D003783 ORTHO05D004568 7.8e-09 65.5 47 72.3
CAN.G60.11 Capsicum annuum HOM05D001322 ORTHO05D001301 1.3e-08 64.7 37 89.2
Solyc04g049870.1 Solanum lycopersicum HOM05D003783 ORTHO05D004568 7.3e-07 58.9 34 85.3


User provided reference genes

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