Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc00g500302.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 7.6e-104 380.6 199 100.0
Solyc11g063573.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 7.6e-104 380.6 199 100.0
Solyc00g500173.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 3.2e-102 375.2 199 98.5
CAN.G2446.3 Capsicum annuum HOM05D007533 ORTHO05D009622 9.6e-99 363.6 199 97.5
CAN.G2792.1 Capsicum annuum HOM05D007533 ORTHO05D009622 9.6e-99 363.6 199 97.5
CAN.G1001.31 Capsicum annuum HOM05D007533 ORTHO05D009622 1.4e-94 349.7 199 93.0
Peaxi162Scf00651g00636 Petunia axillaris HOM05D007533 ORTHO05D009622 3.5e-93 345.1 189 94.7
LjContig00439g0010342 Lotus japonicus HOM05D007533 ORTHO05D009622 4.3e-91 338.2 195 90.3
LjContig00439g0021951 Lotus japonicus HOM05D007533 ORTHO05D009622 4.3e-91 338.2 195 90.3
Glyma.17G185600 Glycine max HOM05D007533 ORTHO05D009622 1.4e-89 333.2 195 88.7
Lalb_Chr00c21g0405841 Lupinus albus HOM05D007533 ORTHO05D009622 1.7e-87 326.2 188 89.9
Lalb_Chr00c24g0407011 Lupinus albus HOM05D007533 ORTHO05D009622 1.7e-87 326.2 188 89.9
MSTRG.26054 Avicennia marina HOM05D007533 ORTHO05D009622 1.4e-86 323.2 199 86.4
AL9U10720 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 2.4e-86 322.4 189 89.9
Thhalv10023156m.g Eutrema salsugineum HOM05D007533 ORTHO05D009622 3.2e-86 322.0 189 89.9
Nn1g09978 Nelumbo nucifera HOM05D007533 ORTHO05D009622 5.5e-86 321.2 199 87.4
Nn1g10040 Nelumbo nucifera HOM05D007533 ORTHO05D009622 5.5e-86 321.2 199 87.4
ATMG00640 Arabidopsis thaliana HOM05D007533 ORTHO05D009622 3.5e-85 318.5 189 88.9
Lj2P1223T74 Lonicera japonica HOM05D007533 ORTHO05D009622 7.9e-85 317.4 189 88.9
Lj2P1228T84 Lonicera japonica HOM05D007533 ORTHO05D009622 7.9e-85 317.4 189 88.9
Lj2P1231T101 Lonicera japonica HOM05D007533 ORTHO05D009622 7.9e-85 317.4 189 88.9
Ah.10g028150 Amaranthus hybridus HOM05D007533 ORTHO05D009622 1.3e-84 316.6 193 86.5
Hma1.2p1_0136F.1_g062009 Hydrangea macrophylla HOM05D007533 ORTHO05D009622 1.3e-84 316.6 189 88.9
CANSAT16G0029 Cannabis sativa HOM05D007533 ORTHO05D009622 2.3e-84 315.8 199 85.9
CARHR283000 Cardamine hirsuta HOM05D007533 ORTHO05D009622 3.0e-84 315.5 189 88.4
Nitab4.5_0010333g0060 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.9e-84 315.1 171 95.9
DCAR_032459 Daucus carota HOM05D007533 ORTHO05D009622 1.1e-83 313.5 189 88.4
Aqoxy23s008 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 1.3e-82 310.1 196 84.7
RcHm_v2.0_MTg0498351 Rosa chinensis HOM05D007533 ORTHO05D009622 1.6e-82 309.7 199 83.4
Sed0020832 Sechium edule HOM05D007533 ORTHO05D009622 1.6e-82 309.7 195 85.1
Aqoxy1G02967 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 3.7e-82 308.5 196 84.2
HanXRQChr16g0504431 Helianthus annuus HOM05D007533 ORTHO05D009622 3.7e-82 308.5 189 87.8
HanXRQMTg0579131 Helianthus annuus HOM05D007533 ORTHO05D009622 3.7e-82 308.5 189 87.8
Lsat_1_v5_gn_0_35060 Lactuca sativa HOM05D007533 ORTHO05D009622 3.7e-82 308.5 189 87.8
CsaV3_UNG210000 Cucumis sativus L. HOM05D007533 ORTHO05D009622 3.1e-81 305.4 195 84.6
HanXRQChr09g0253411 Helianthus annuus HOM05D007533 ORTHO05D009622 3.1e-81 305.4 189 87.3
arahy.Tifrunner.gnm1.ann1.6ILC2A Arachis hypogaea HOM05D007533 ORTHO05D009622 3.4e-80 302.0 174 89.1
arahy.Tifrunner.gnm1.ann1.R8TWAM Arachis hypogaea HOM05D007533 ORTHO05D009622 3.4e-80 302.0 174 89.1
Potri.007G061641 Populus trichocarpa HOM05D007533 ORTHO05D009622 4.9e-79 298.1 199 82.4
Potri.007G062602 Populus trichocarpa HOM05D007533 ORTHO05D009622 4.9e-79 298.1 199 82.4
Gorai.001G167400 Gossypium raimondii HOM05D007533 ORTHO05D009622 1.1e-78 297.0 195 82.6
PGSC0003DMG400026520 Solanum tuberosum HOM05D007533 ORTHO05D009622 1.4e-78 296.6 155 98.7
AUR62042328 Chenopodium quinoa HOM05D007533 ORTHO05D009622 7.1e-78 294.3 180 86.7
Dinv06666 Davidia involucrata HOM05D007533 ORTHO05D009622 3.0e-76 288.9 171 88.3
MBI05_g05359_MAGBIO Magnolia biondii HOM05D007533 ORTHO05D009622 3.0e-76 288.9 182 84.6
Sopen00g001050 Solanum pennellii HOM05D007533 ORTHO05D009622 8.7e-76 287.3 150 98.0
Lj2P1226T70 Lonicera japonica HOM05D007533 ORTHO05D009622 1.9e-75 286.2 164 91.5
Aa31csc1168G30 Aethionema arabicum HOM05D007533 ORTHO05D009622 2.4e-73 279.3 158 92.4
Nitab4.5_0010033g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.0e-72 276.2 150 94.0
QL12p027939 Quercus lobata HOM05D007533 ORTHO05D009622 2.1e-69 266.2 178 78.7
Aqoxy12s024 Aquilegia oxysepala HOM05D007533 ORTHO05D009622 2.7e-69 265.8 150 94.0
RhsimMtG0003100 Rhododendron simsii HOM05D007194 ORTHO05D009182 6.1e-69 264.6 147 93.9
RhsimMtG0007900 Rhododendron simsii HOM05D007194 ORTHO05D009182 6.1e-69 264.6 147 93.9
CARHR288330 Cardamine hirsuta HOM05D007533 ORTHO05D009622 3.0e-68 262.3 146 93.8
Peaxi162Scf01098g00002 Petunia axillaris HOM05D007533 ORTHO05D009622 8.2e-66 254.2 131 99.2
PGSC0003DMG400030942 Solanum tuberosum HOM05D007533 ORTHO05D009622 2.4e-65 252.7 143 90.2
ATR0155G001 Amborella trichopoda HOM05D007533 ORTHO05D009622 9.1e-65 250.8 158 84.2
Ah.02g111570 Amaranthus hybridus HOM05D007533 ORTHO05D009622 1.2e-64 250.4 153 84.3
Nitab4.5_0012599g0080 Nicotiana tabacum HOM05D007533 ORTHO05D009622 7.7e-64 247.7 133 95.5
CDE02G4305 Ceratophyllum demersum HOM05D007533 ORTHO05D009622 1.0e-63 247.3 147 88.4
A04p09330 Brassica napus HOM05D007533 ORTHO05D009622 6.5e-63 244.6 185 74.1
BraSC48t46232Z Brassica rapa HOM05D007533 ORTHO05D009622 6.5e-63 244.6 185 74.1
BraSC48t46320Z Brassica rapa HOM05D007533 ORTHO05D009622 6.5e-63 244.6 185 74.1
Nitab4.5_0000172g1940 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.1e-62 243.8 187 74.9
C01p34790 Brassica napus HOM05D007533 ORTHO05D009622 3.6e-61 238.8 185 71.9
SGA_v2.0_scaffold255G45496 Striga asiatica HOM05D001560 ORTHO05D003613 2.6e-59 232.6 135 88.9
AL6G41410 Arabidopsis lyrata HOM05D007533 ORTHO05D009622 8.2e-58 227.6 145 83.4
SabraMtG0004200 Salix brachista HOM05D007533 ORTHO05D009622 6.9e-57 224.6 150 80.7
BolSC28t60309H Brassica oleracea HOM05D007533 ORTHO05D009622 1.2e-56 223.8 132 87.1
BolSC28t60365H Brassica oleracea HOM05D007533 ORTHO05D009622 1.2e-56 223.8 132 87.1
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 3.4e-56 222.2 122 92.6
arahy.Tifrunner.gnm1.ann1.PN90EB Arachis hypogaea HOM05D007533 ORTHO05D009622 3.4e-56 222.2 122 92.6
Ca_07436_v3 Cicer arietinum L. HOM05D004537 ORTHO05D005492 3.0e-52 209.1 175 67.4
TPR.G21214 Trifolium pratense HOM05D007533 ORTHO05D009622 1.5e-51 206.8 119 87.4
unitig_87.g27950 Utricularia gibba HOM05D007533 ORTHO05D009622 5.7e-51 204.9 148 73.6
Ca_07440_v3 Cicer arietinum L. HOM05D007194 ORTHO05D009182 7.4e-51 204.5 175 66.9
Lsat_1_v5_gn_5_43041 Lactuca sativa HOM05D007533 ORTHO05D009622 6.1e-45 184.9 115 87.0
SalBow1G6690 Salvia bowleyana HOM05D007533 ORTHO05D009622 4.0e-44 182.2 122 77.0
BolC1t03447H Brassica oleracea HOM05D007533 ORTHO05D009622 4.1e-41 172.2 99 90.9
SHI34934 Sapria himalayana HOM05D004909 ORTHO05D009316 2.2e-39 166.4 99 84.8
HanXRQChr07g0189001 Helianthus annuus HOM05D007533 ORTHO05D009622 2.9e-39 166.0 97 92.8
CAN.G649.12 Capsicum annuum HOM05D007533 ORTHO05D009622 8.5e-39 164.5 89 93.3
BraSC54t46363Z Brassica rapa HOM05D007533 ORTHO05D009622 2.3e-36 156.4 86 95.3
Nitab4.5_0010333g0150 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.6e-35 152.9 88 93.2
Nitab4.5_0010333g0120 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.7e-34 150.2 79 94.9
FAN20G2339 Fragaria x ananassa HOM05D007533 ORTHO05D010378 5.4e-33 145.2 84 90.5
TPR.G39970 Trifolium pratense HOM05D007533 ORTHO05D009622 4.7e-29 132.1 75 94.7
SHI23927 Sapria himalayana HOM05D007533 ORTHO05D009622 1.4e-25 120.6 76 80.3
HanXRQChr17g0567331 Helianthus annuus HOM05D007533 ORTHO05D009622 3.5e-24 115.9 81 75.3
C03p57120 Brassica napus HOM05D007533 ORTHO05D009622 4.5e-24 115.5 80 76.2
BolC3t17989H Brassica oleracea HOM05D007533 ORTHO05D009622 4.5e-24 115.5 80 76.2
Nitab4.5_0000068g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.1e-22 110.9 68 89.7
Peaxi162Scf01098g00011 Petunia axillaris HOM05D007533 ORTHO05D009622 4.3e-22 109.0 64 89.1
Nitab4.5_0002253g0020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 1.6e-21 107.1 65 81.5
Nitab4.5_0000034g0140 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.1e-21 106.7 60 90.0
Nitab4.5_0000172g2020 Nicotiana tabacum HOM05D007533 ORTHO05D009622 2.8e-21 106.3 83 72.3
ATR0807G043 Amborella trichopoda HOM05D007533 ORTHO05D009622 2.3e-20 103.2 68 80.9
SHI19534 Sapria himalayana HOM05D007533 ORTHO05D010378 4.0e-20 102.4 97 67.0
Lsat_1_v5_gn_1_118900 Lactuca sativa HOM05D007533 ORTHO05D009622 5.2e-20 102.1 73 71.2
SHI19535 Sapria himalayana HOM05D000105 ORTHO05D000023 6.8e-20 101.7 76 69.7
Gohir.D01G116666 Gossypium hirsutum HOM05D007533 ORTHO05D009622 9.8e-19 97.8 65 73.8
Solyc06g042990.1 Solanum lycopersicum HOM05D007533 ORTHO05D009622 3.7e-18 95.9 68 70.6
Oeu041867.1 Olea europaea HOM05D007533 ORTHO05D009622 1.7e-15 87.0 47 89.4
Peaxi162Scf00673g00229 Petunia axillaris HOM05D011380 ORTHO05D016005 1.6e-13 80.5 43 100.0
Nitab4.5_0000832g0090 Nicotiana tabacum HOM05D007533 ORTHO05D009622 3.4e-11 72.8 45 80.0
CDE02G0940 Ceratophyllum demersum HOM05D000131 ORTHO05D000086 7.0e-09 65.1 39 79.5
Potri.007G062422 Populus trichocarpa HOM05D007533 ORTHO05D010378 7.0e-09 65.1 59 66.1
Solyc02g021390.1 Solanum lycopersicum HOM05D007533 ORTHO05D016005 7.8e-08 61.6 38 89.5
GSVIVG01010884001 Vitis vinifera HOM05D007533 ORTHO05D009622 4.3e-06 55.8 49 57.1


User provided reference genes

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