Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g063540.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 6.7e-102 374.0 188 100.0
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 6.9e-91 337.4 196 88.8
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 6.9e-91 337.4 196 88.8
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 6.9e-91 337.4 196 88.8
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.9e-90 334.3 168 100.0
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.9e-90 334.3 168 100.0
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 5.9e-90 334.3 168 100.0
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 3.6e-79 298.5 149 100.0
Sopen05g012620 Solanum pennellii HOM05D002660 ORTHO05D003902 3.6e-79 298.5 149 100.0
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 6.8e-70 267.7 140 95.7
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 5.4e-67 258.1 168 75.0
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 3.2e-64 248.8 168 72.6
CAN.G841.4 Capsicum annuum HOM05D002660 ORTHO05D003902 6.8e-62 241.1 168 72.0
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 2.0e-58 229.6 167 65.3
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 1.9e-56 223.0 151 68.9
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 8.0e-55 217.6 151 67.5
CAN.G1001.30 Capsicum annuum HOM05D002660 ORTHO05D003902 5.2e-54 214.9 161 66.5
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 9.2e-51 204.1 168 59.5
CAN.G993.8 Capsicum annuum HOM05D002660 ORTHO05D003902 3.3e-48 195.7 130 70.8
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 1.1e-43 180.6 173 54.3
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 1.1e-43 180.6 173 54.3
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 1.4e-43 180.3 173 54.3
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 1.4e-43 180.3 173 54.3
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.9e-43 179.9 153 57.5
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.9e-43 179.9 153 57.5
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 4.1e-43 178.7 164 60.4
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 4.1e-43 178.7 161 55.3
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 7.0e-43 177.9 160 57.5
CAN.G140.15 Capsicum annuum HOM05D002660 ORTHO05D003902 1.2e-42 177.2 135 65.9
PGSC0003DMG400006470 Solanum tuberosum HOM05D002660 ORTHO05D003902 1.3e-41 173.7 114 82.5
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 3.9e-41 172.2 155 57.4
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 8.6e-41 171.0 167 52.1
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 5.6e-40 168.3 118 70.3
Peaxi162Scf00625g00034 Petunia axillaris HOM05D002660 ORTHO05D003902 1.5e-37 160.2 101 76.2
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 2.9e-36 156.0 142 55.6
CAN.G26.9 Capsicum annuum HOM05D002660 ORTHO05D003902 3.2e-35 152.5 95 75.8
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 6.8e-30 134.8 167 44.3
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 6.8e-30 134.8 167 44.3
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 6.8e-30 134.8 167 44.3
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 6.8e-30 134.8 167 44.3
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 8.9e-30 134.4 167 44.3
Solyc00g142170.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 8.9e-30 134.4 81 77.8
Solyc00g500255.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 8.9e-30 134.4 81 77.8
PGSC0003DMG400001137 Solanum tuberosum HOM05D002660 ORTHO05D003902 2.0e-29 133.3 81 76.5
Solyc09g056290.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.6e-29 132.9 84 83.3
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 2.2e-28 129.8 142 47.2
Peaxi162Scf00611g00057 Petunia axillaris HOM05D002660 ORTHO05D003902 1.9e-27 126.7 84 70.2
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 2.4e-27 126.3 167 41.9
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 7.1e-27 124.8 128 50.0
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 1.2e-26 124.0 76 76.3
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 1.6e-26 123.6 114 51.8
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 4.6e-26 122.1 130 46.9
PGSC0003DMG400023071 Solanum tuberosum HOM05D002660 ORTHO05D011807 4.6e-26 122.1 65 95.4
Nitab4.5_0012260g0040 Nicotiana tabacum HOM05D002660 ORTHO05D003902 7.8e-26 121.3 152 40.1
CAN.G70.3 Capsicum annuum HOM05D002660 ORTHO05D003902 2.3e-25 119.8 126 54.0
Dinv06680 Davidia involucrata HOM05D002660 ORTHO05D011644 1.1e-24 117.5 165 41.2
LjContig00315g0012920 Lotus japonicus HOM05D002660 ORTHO05D003902 2.5e-24 116.3 131 45.8
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 4.3e-24 115.5 149 43.0
CAN.G1.4 Capsicum annuum HOM05D002660 ORTHO05D003902 9.6e-24 114.4 113 56.6
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 1.2e-23 114.0 142 44.4
Solyc09g056110.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.6e-23 113.6 70 82.9
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 2.1e-23 113.2 88 60.2
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 2.1e-23 113.2 88 60.2
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 6.2e-23 111.7 66 77.3
Lsat_1_v5_gn_5_13340 Lactuca sativa HOM05D002660 ORTHO05D003902 1.1e-22 110.9 109 48.6
Solyc11g030920.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 6.9e-22 108.2 71 69.0
Nitab4.5_0001607g0070 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.2e-21 107.5 137 40.9
Thhalv10003100m.g Eutrema salsugineum HOM05D002660 ORTHO05D003902 1.5e-21 107.1 75 64.0
BolC6t36210H Brassica oleracea HOM05D002660 ORTHO05D003902 2.0e-21 106.7 88 58.0
BraSC77t46647Z Brassica rapa HOM05D002660 ORTHO05D003902 2.6e-21 106.3 129 45.7
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 2.6e-21 106.3 116 47.4
CAN.G1126.7 Capsicum annuum HOM05D002660 ORTHO05D011807 4.4e-21 105.5 65 81.5
CAN.G200.4 Capsicum annuum HOM05D002660 ORTHO05D011807 4.4e-21 105.5 65 81.5
CAN.G1159.14 Capsicum annuum HOM05D002660 ORTHO05D011807 5.8e-21 105.1 65 81.5
CAN.G72.10 Capsicum annuum HOM05D002660 ORTHO05D003902 5.8e-21 105.1 63 77.8
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 1.7e-20 103.6 97 48.5
Nitab4.5_0003758g0080 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.9e-19 100.1 105 43.8
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 1.9e-19 100.1 93 53.8
SGA_v2.0_scaffold245G44628 Striga asiatica HOM05D002660 ORTHO05D003902 2.4e-19 99.8 134 44.0
CAN.G134.22 Capsicum annuum HOM05D002660 ORTHO05D011807 3.2e-19 99.4 65 76.9
arahy.Tifrunner.gnm1.ann1.KBVE6B Arachis hypogaea HOM05D002660 ORTHO05D003902 4.2e-19 99.0 75 56.0
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 4.2e-19 99.0 125 42.4
Solyc11g030850.1 Solanum lycopersicum HOM05D002660 ORTHO05D011807 7.1e-19 98.2 63 84.1
TAR371G0124 Trochodendron aralioides HOM05D002660 ORTHO05D003902 7.1e-19 98.2 126 41.3
arahy.Tifrunner.gnm1.ann1.KE43QT Arachis hypogaea HOM05D002660 ORTHO05D007974 2.1e-18 96.7 117 46.2
arahy.Tifrunner.gnm1.ann1.QE4HQU Arachis hypogaea HOM05D002660 ORTHO05D007974 2.1e-18 96.7 117 46.2
Sed0024408 Sechium edule HOM05D002660 ORTHO05D003902 2.1e-18 96.7 89 52.8
Lsat_1_v5_gn_5_172580 Lactuca sativa HOM05D002660 ORTHO05D003902 3.5e-18 95.9 94 50.0
MBI05_g05346_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 3.5e-18 95.9 162 39.5
BcaC08g43703 Brassica carinata HOM05D002660 ORTHO05D003902 4.6e-18 95.5 96 53.1
ATR0502G001 Amborella trichopoda HOM05D002660 ORTHO05D003902 7.8e-18 94.7 118 44.1
Glyma.12G175100 Glycine max HOM05D002660 ORTHO05D003902 2.3e-17 93.2 100 48.0
Nitab4.5_0001796g0150 Nicotiana tabacum HOM05D002660 ORTHO05D011807 2.3e-17 93.2 65 70.8
CAN.G1355.2 Capsicum annuum HOM05D002660 ORTHO05D003902 3.0e-17 92.8 108 41.7
CSS0017389 Camellia sinensis var. sinensis HOM05D002660 ORTHO05D003902 3.9e-17 92.4 126 38.9
Solyc00g142160.1 Solanum lycopersicum HOM05D002660 ORTHO05D011807 8.7e-17 91.3 61 75.4
Nitab4.5_0027526g0010 Nicotiana tabacum HOM05D002660 ORTHO05D011807 1.5e-16 90.5 66 69.7
SGA_v2.0_scaffold400G50852 Striga asiatica HOM05D000388 ORTHO05D000473 2.5e-16 89.7 69 56.5
CsaV3_UNG207980 Cucumis sativus L. HOM05D002660 ORTHO05D003902 7.3e-16 88.2 163 36.8
Nitab4.5_0000031g0200 Nicotiana tabacum HOM05D002660 ORTHO05D003902 9.6e-16 87.8 138 36.2
Nitab4.5_0000172g1900 Nicotiana tabacum HOM05D002660 ORTHO05D011807 9.6e-16 87.8 68 64.7
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.3e-15 87.4 85 45.9
Nn1g10113 Nelumbo nucifera HOM05D002660 ORTHO05D003902 8.1e-15 84.7 85 48.2
Oeu022571.1 Olea europaea HOM05D001387 ORTHO05D001250 8.1e-15 84.7 98 42.9
SalBow7G1147 Salvia bowleyana HOM05D002660 ORTHO05D009845 1.4e-14 84.0 73 54.8
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 1.8e-14 83.6 68 55.9
Nitab4.5_0000592g0110 Nicotiana tabacum HOM05D002660 ORTHO05D011807 3.1e-14 82.8 65 64.6
Gorai.001G162700 Gossypium raimondii HOM05D002660 ORTHO05D003902 9.0e-14 81.3 93 39.8
Gorai.009G406600 Gossypium raimondii HOM05D002660 ORTHO05D003902 9.0e-14 81.3 103 36.9
HPP92_006535 Vanilla planifolia HOM05D002660 ORTHO05D003902 1.2e-13 80.9 94 43.6
Actinidia02791 Actinidia chinensis HOM05D002660 ORTHO05D003902 1.5e-13 80.5 140 40.0
TAR626G0574 Trochodendron aralioides HOM05D002660 ORTHO05D003902 1.5e-13 80.5 150 34.7
VMungo0985G0011 Vigna mungo HOM05D008696 ORTHO05D002807 1.5e-13 80.5 84 50.0
Nitab4.5_0001152g0860 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.6e-13 79.7 123 39.0
Peaxi162Scf01528g00009 Petunia axillaris HOM05D010952 ORTHO05D017366 2.6e-13 79.7 113 38.9
Sopen11g012750 Solanum pennellii HOM05D002660 ORTHO05D003902 2.6e-13 79.7 127 36.2
Nitab4.5_0001796g0170 Nicotiana tabacum HOM05D002660 ORTHO05D003902 5.8e-13 78.6 119 36.1
Nitab4.5_0017902g0020 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.2e-12 76.6 118 36.4
CAN.G505.14 Capsicum annuum HOM05D000743 ORTHO05D000580 1.1e-11 74.3 96 43.8
CsaV3_UNG194490 Cucumis sativus L. HOM05D002660 ORTHO05D003902 1.4e-11 73.9 88 46.6
Sc05g0004260 Simmondsia chinensis HOM05D002660 ORTHO05D003902 1.4e-11 73.9 65 52.3
CAN.G999.39 Capsicum annuum HOM05D002660 ORTHO05D003902 1.9e-11 73.6 41 75.6
Nn1g10106 Nelumbo nucifera HOM05D002660 ORTHO05D003902 1.9e-11 73.6 80 47.5
Nn1g10197 Nelumbo nucifera HOM05D002660 ORTHO05D003902 1.9e-11 73.6 80 47.5
Nitab4.5_0000172g2140 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.9e-11 73.6 143 32.9
COL.COLO4_04088 Corchorus olitorius HOM05D002660 ORTHO05D003902 2.4e-11 73.2 184 29.3
Lj2A1234T113 Lonicera japonica HOM05D002660 ORTHO05D003902 2.4e-11 73.2 146 37.0
Oeu021479.1 Olea europaea HOM05D002660 ORTHO05D011706 2.4e-11 73.2 68 45.6
Psat4g178320 Pisum sativum HOM05D002660 ORTHO05D003902 2.4e-11 73.2 133 36.8
Nitab4.5_0001788g0190 Nicotiana tabacum HOM05D002660 ORTHO05D011807 4.2e-11 72.4 54 66.7
CAN.G819.4 Capsicum annuum HOM05D002660 ORTHO05D003902 7.1e-11 71.6 35 88.6
Nitab4.5_0009256g0020 Nicotiana tabacum HOM05D002660 ORTHO05D003902 7.1e-11 71.6 142 35.2
Lsat_1_v5_gn_8_124640 Lactuca sativa HOM05D002660 ORTHO05D003902 1.2e-10 70.9 88 42.0
Lsat_1_v5_gn_8_93860 Lactuca sativa HOM05D002660 ORTHO05D003902 1.2e-10 70.9 88 42.0
CAN.G1594.3 Capsicum annuum HOM05D002660 ORTHO05D011674 2.1e-10 70.1 126 35.7
Cfa021334 Carpinus fangiana HOM05D002660 ORTHO05D003902 4.6e-10 68.9 90 43.3
Solyc07g008830.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 6.0e-10 68.6 77 44.2
SalBow1G8110 Salvia bowleyana HOM05D002660 ORTHO05D003902 1.8e-09 67.0 82 42.7
Cpa.g.sc263.18 Carica papaya HOM05D002660 ORTHO05D003902 3.0e-09 66.2 57 54.4
SGA_v2.0_scaffold601G53131 Striga asiatica HOM05D002660 ORTHO05D003902 3.9e-09 65.9 169 32.5
Duzib116G0123 Durio zibethinus HOM05D002660 ORTHO05D003902 5.1e-09 65.5 100 35.0
Peaxi162Scf00651g00640 Petunia axillaris HOM05D002660 ORTHO05D003902 8.7e-09 64.7 122 35.2
MBI14_g38258_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.1e-08 64.3 55 52.7
TPR.G40534 Trifolium pratense HOM05D002660 ORTHO05D003902 1.1e-08 64.3 64 51.6
MBI14_g44090_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.9e-08 63.5 56 53.6
Nitab4.5_0001023g0120 Nicotiana tabacum HOM05D002660 ORTHO05D003902 2.5e-08 63.2 60 41.7
SGA_v2.0_scaffold255G45343 Striga asiatica HOM05D000003 ORTHO05D000006 9.6e-08 61.2 130 29.2
Medtr0212s0050 Medicago truncatula HOM05D002660 ORTHO05D003902 1.3e-07 60.8 71 49.3
Gohir.A06G098104 Gossypium hirsutum HOM05D002660 ORTHO05D003902 1.6e-07 60.5 89 36.0
Nitab4.5_0002093g0160 Nicotiana tabacum HOM05D011968 ORTHO05D014241 2.1e-07 60.1 49 53.1
Ca_07940_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 3.7e-07 59.3 71 47.9
Ca_08791_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 3.7e-07 59.3 71 47.9
Ca_22174_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 3.7e-07 59.3 71 47.9
Ca_26184_v3 Cicer arietinum L. HOM05D002660 ORTHO05D003902 3.7e-07 59.3 71 47.9
Nitab4.5_0013560g0040 Nicotiana tabacum HOM05D011968 ORTHO05D014241 3.7e-07 59.3 51 52.9
MBI03_g45449_MAGBIO Magnolia biondii HOM05D017124 ORTHO05D017284 4.8e-07 58.9 153 30.1
Nitab4.5_0010333g0110 Nicotiana tabacum HOM05D011968 ORTHO05D014241 6.2e-07 58.5 51 51.0
SHI02522 Sapria himalayana HOM05D002660 ORTHO05D003902 6.2e-07 58.5 64 45.3
Sed0005295 Sechium edule HOM05D002660 ORTHO05D003902 6.2e-07 58.5 91 38.5
MBI06_g04141_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 8.1e-07 58.2 67 44.8
Nitab4.5_0000592g0160 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.1e-06 57.8 103 35.9
MBI05_g23324_MAGBIO Magnolia biondii HOM05D017124 ORTHO05D017284 1.8e-06 57.0 153 29.4
Nitab4.5_0000844g0150 Nicotiana tabacum HOM05D011968 ORTHO05D014241 1.8e-06 57.0 56 46.4
SHI35758 Sapria himalayana HOM05D024615 ORTHO05D003902 1.8e-06 57.0 115 37.4
SHI35938 Sapria himalayana HOM05D024615 ORTHO05D003902 1.8e-06 57.0 115 37.4
Solyc11g030860.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.8e-06 57.0 30 86.7
ATMG00490 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 2.4e-06 56.6 37 59.5
MELO3C033917.2 Cucumis melo HOM05D001963 ORTHO05D001863 2.4e-06 56.6 57 49.1
Nitab4.5_0000172g0830 Nicotiana tabacum HOM05D002660 ORTHO05D011807 2.4e-06 56.6 67 50.7
Peaxi162Scf00625g00036 Petunia axillaris HOM05D002660 ORTHO05D003902 5.3e-06 55.5 84 40.5
Nitab4.5_0005831g0080 Nicotiana tabacum HOM05D011968 ORTHO05D014241 9.0e-06 54.7 51 47.1
Sed0012925 Sechium edule HOM05D002660 ORTHO05D003902 9.0e-06 54.7 33 63.6


User provided reference genes

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