Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g063530.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 3.3e-77 291.6 140 100.0
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.2e-59 231.1 110 100.0
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.2e-59 231.1 110 100.0
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.2e-59 231.1 110 100.0
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.2e-59 231.1 110 100.0
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 5.2e-59 231.1 110 100.0
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 5.2e-59 231.1 110 100.0
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 5.1e-38 161.4 110 68.2
Sopen05g012700 Solanum pennellii HOM05D002660 ORTHO05D000001 9.6e-37 157.1 96 78.1
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 2.2e-33 146.0 110 60.0
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 2.2e-33 146.0 110 60.0
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 1.2e-26 123.6 81 70.4
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 2.6e-26 122.5 117 54.7
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 4.5e-26 121.7 96 56.2
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 4.5e-26 121.7 96 56.2
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 4.5e-26 121.7 96 56.2
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 4.5e-26 121.7 96 56.2
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 4.5e-26 121.7 96 56.2
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 4.5e-26 121.7 96 56.2
BolC6t36210H Brassica oleracea HOM05D002660 ORTHO05D003902 4.9e-25 118.2 96 54.2
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.2e-24 115.2 140 50.0
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 6.0e-23 111.3 93 58.1
arahy.Tifrunner.gnm1.ann1.DD5JWP Arachis hypogaea HOM05D002660 ORTHO05D003902 2.3e-22 109.4 105 54.3
SGA_v2.0_scaffold255G45438 Striga asiatica HOM05D002660 ORTHO05D003902 8.7e-22 107.5 92 53.3
arahy.Tifrunner.gnm1.ann1.4WR8AK Arachis hypogaea HOM05D002660 ORTHO05D003902 1.9e-21 106.3 97 57.7
arahy.Tifrunner.gnm1.ann1.64IP8W Arachis hypogaea HOM05D002660 ORTHO05D003902 1.9e-21 106.3 97 57.7
arahy.Tifrunner.gnm1.ann1.MHP2RT Arachis hypogaea HOM05D002660 ORTHO05D003902 1.9e-21 106.3 97 57.7
arahy.Tifrunner.gnm1.ann1.RJKU2P Arachis hypogaea HOM05D002660 ORTHO05D003902 1.9e-21 106.3 97 57.7
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 7.4e-21 104.4 90 57.8
Cpa.g.sc263.8 Carica papaya HOM05D002660 ORTHO05D003902 1.3e-20 103.6 91 56.0
SGA_v2.0_scaffold400G50856 Striga asiatica HOM05D002660 ORTHO05D003902 2.1e-20 102.8 95 50.5
Solyc10g047100.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.8e-20 102.4 58 84.5
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 3.1e-19 99.0 91 49.5
unitig_87.g28008 Utricularia gibba HOM05D002660 ORTHO05D003902 5.3e-19 98.2 125 46.4
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 9.0e-19 97.4 90 50.0
arahy.Tifrunner.gnm1.ann1.1F9GAV Arachis hypogaea HOM05D002660 ORTHO05D003902 3.4e-18 95.5 97 53.6
Solyc11g030860.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.8e-18 94.7 51 84.3
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 2.2e-17 92.8 95 48.4
Lj2P1228T81 Lonicera japonica HOM05D011380 ORTHO05D019448 2.2e-17 92.8 85 51.8
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 3.8e-17 92.0 95 48.4
Sed0005295 Sechium edule HOM05D002660 ORTHO05D003902 8.4e-17 90.9 90 50.0
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 1.9e-16 89.7 95 47.4
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.6e-15 86.7 91 48.4
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 2.1e-15 86.3 66 60.6
arahy.Tifrunner.gnm1.ann1.PGW3V5 Arachis hypogaea HOM05D002660 ORTHO05D003902 4.6e-15 85.1 68 63.2
arahy.Tifrunner.gnm1.ann1.UMNW15 Arachis hypogaea HOM05D002660 ORTHO05D003902 4.6e-15 85.1 68 63.2
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 3.9e-14 82.0 87 49.4
Lj2A1234T113 Lonicera japonica HOM05D002660 ORTHO05D003902 3.9e-14 82.0 86 48.8
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 3.9e-14 82.0 102 46.1
Ca_22176_v3 Cicer arietinum L. HOM05D001560 ORTHO05D003613 5.1e-14 81.6 56 66.1
PGSC0003DMG400001137 Solanum tuberosum HOM05D002660 ORTHO05D003902 8.7e-14 80.9 58 63.8
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 1.9e-13 79.7 58 63.8
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 1.9e-13 79.7 58 63.8
MBI05_g23322_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009798 4.3e-13 78.6 91 48.4
Solyc00g142170.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.3e-13 78.6 58 62.1
Solyc00g500255.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.3e-13 78.6 58 62.1
CAN.G505.3 Capsicum annuum HOM05D002660 ORTHO05D003902 5.7e-13 78.2 58 60.3
SGA_v2.0_scaffold400G50852 Striga asiatica HOM05D000388 ORTHO05D000473 2.1e-12 76.3 114 40.4
CAN.G72.10 Capsicum annuum HOM05D002660 ORTHO05D003902 4.8e-12 75.1 48 68.8
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 6.3e-12 74.7 78 44.9
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 6.3e-12 74.7 78 44.9
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 6.3e-12 74.7 78 44.9
CAN.G505.14 Capsicum annuum HOM05D000743 ORTHO05D000580 6.3e-12 74.7 58 62.1
ATR0575G001 Amborella trichopoda HOM05D002660 ORTHO05D003902 1.4e-11 73.6 53 60.4
ATR0661G179 Amborella trichopoda HOM05D002660 ORTHO05D003902 1.8e-11 73.2 84 46.4
CAN.G999.39 Capsicum annuum HOM05D002660 ORTHO05D003902 3.1e-11 72.4 58 58.6
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 6.9e-11 71.2 59 55.9
SGA_v2.0_scaffold507G52551 Striga asiatica HOM05D002660 ORTHO05D003902 6.9e-11 71.2 65 55.4
vmacro00721 Vaccinium macrocarpon HOM05D005420 ORTHO05D006524 6.9e-11 71.2 61 54.1
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 1.5e-10 70.1 49 63.3
BcaC05g27131 Brassica carinata HOM05D002660 ORTHO05D003902 3.4e-10 68.9 93 39.8
SabraMtG0005500 Salix brachista HOM05D002660 ORTHO05D003902 3.4e-10 68.9 52 61.5
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 1.0e-09 67.4 54 59.3
Peaxi162Scf00456g00034 Petunia axillaris HOM05D004909 ORTHO05D009316 2.2e-09 66.2 54 59.3
COL.COLO4_04088 Corchorus olitorius HOM05D002660 ORTHO05D003902 2.9e-09 65.9 66 43.9
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 5.0e-09 65.1 58 50.0
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 6.5e-09 64.7 58 50.0
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 6.5e-09 64.7 75 45.3
CAN.G26.9 Capsicum annuum HOM05D002660 ORTHO05D003902 1.1e-08 63.9 58 56.9
SGA_v2.0_scaffold420G51422 Striga asiatica HOM05D002660 ORTHO05D019448 2.5e-08 62.8 66 50.0
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 5.5e-08 61.6 64 51.6
arahy.Tifrunner.gnm1.ann1.FFDS4S Arachis hypogaea HOM05D002660 ORTHO05D003902 7.2e-08 61.2 93 40.9
Psat1g132480 Pisum sativum HOM05D030242 ORTHO05D030475 9.3e-08 60.8 42 64.3
PGSC0003DMG400009608 Solanum tuberosum HOM05D014842 ORTHO05D010514 9.3e-08 60.8 44 68.2
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 1.6e-07 60.1 49 53.1
arahy.Tifrunner.gnm1.ann1.2INJ5A Arachis hypogaea HOM05D002660 ORTHO05D003902 2.3e-06 56.2 91 38.5
Sopen05g012710 Solanum pennellii HOM05D008696 ORTHO05D010514 3.0e-06 55.8 44 63.6
Nn1g10106 Nelumbo nucifera HOM05D002660 ORTHO05D003902 3.9e-06 55.5 54 53.7
Nn1g10197 Nelumbo nucifera HOM05D002660 ORTHO05D003902 3.9e-06 55.5 54 53.7


User provided reference genes

Program Settings