Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g062180.1 Solanum lycopersicum HOM05D000005 ORTHO05D011639 2.3e-84 315.5 154 100.0
Solyc00g500405.1 Solanum lycopersicum HOM05D000005 ORTHO05D011639 1.2e-37 160.2 154 59.1
CAN.G107.21 Capsicum annuum HOM05D000005 ORTHO05D011639 3.2e-33 145.6 163 53.4
Solyc07g052790.3 Solanum lycopersicum HOM05D000005 ORTHO05D011639 1.9e-30 136.3 132 59.8
CAN.G401.1 Capsicum annuum HOM05D000005 ORTHO05D011639 2.1e-29 132.9 150 53.3
Solyc12g097010.1 Solanum lycopersicum HOM05D000005 ORTHO05D011639 2.8e-29 132.5 132 56.8
Nitab4.5_0004247g0020 Nicotiana tabacum HOM05D000005 ORTHO05D011639 4.0e-28 128.6 171 46.8
CAN.G107.34 Capsicum annuum HOM05D000005 ORTHO05D011639 3.4e-27 125.6 161 50.3
CAN.G566.11 Capsicum annuum HOM05D000005 ORTHO05D011639 4.2e-25 118.6 175 44.6
Sopen12g032820 Solanum pennellii HOM05D000005 ORTHO05D011639 1.6e-24 116.7 86 66.3
CAN.G566.6 Capsicum annuum HOM05D000005 ORTHO05D011639 2.7e-24 115.9 170 44.7
PGSC0003DMG400003445 Solanum tuberosum HOM05D000005 ORTHO05D000012 1.0e-23 114.0 166 45.8
CAN.G566.9 Capsicum annuum HOM05D000005 ORTHO05D011639 1.7e-23 113.2 167 44.3
CAN.G566.7 Capsicum annuum HOM05D000005 ORTHO05D011639 6.6e-23 111.3 170 43.5
Nitab4.5_0002738g0020 Nicotiana tabacum HOM05D000005 ORTHO05D011639 8.7e-23 110.9 152 44.7
CAN.G1139.7 Capsicum annuum HOM05D000005 ORTHO05D011639 1.9e-22 109.8 144 47.2
Solyc07g052785.1 Solanum lycopersicum HOM05D000005 ORTHO05D011639 1.3e-21 107.1 152 44.7
CAN.G459.23 Capsicum annuum HOM05D000005 ORTHO05D011639 4.0e-20 102.1 162 42.0
CAN.G645.26 Capsicum annuum HOM05D000005 ORTHO05D000012 4.3e-14 82.0 186 33.3
PGSC0003DMG403016981 Solanum tuberosum HOM05D000005 ORTHO05D000012 7.3e-14 81.3 181 32.0
CAN.G107.14 Capsicum annuum HOM05D000005 ORTHO05D011639 1.1e-12 77.4 106 47.2
Sopen11g006110 Solanum pennellii HOM05D000005 ORTHO05D000012 5.3e-12 75.1 188 31.4
PGSC0003DMG401002428 Solanum tuberosum HOM05D000005 ORTHO05D001748 6.9e-12 74.7 177 32.2
Sopen11g005840 Solanum pennellii HOM05D000005 ORTHO05D000012 1.2e-11 73.9 158 32.3
PGSC0003DMG400002427 Solanum tuberosum HOM05D000005 ORTHO05D000012 2.6e-11 72.8 138 36.2
PGSC0003DMG402015682 Solanum tuberosum HOM05D000005 ORTHO05D000012 2.6e-11 72.8 140 34.3
Solyc11g011080.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 3.4e-11 72.4 158 31.0
Solyc07g052770.2 Solanum lycopersicum HOM05D000005 ORTHO05D011639 4.5e-11 72.0 87 50.6
BcaB08g36752 Brassica carinata HOM05D000005 ORTHO05D000012 5.8e-11 71.6 177 32.2
RcHm_v2.0_Chr2g0106551 Rosa chinensis HOM05D000005 ORTHO05D012233 5.8e-11 71.6 158 31.6
RcHm_v2.0_Chr2g0106511 Rosa chinensis HOM05D000005 ORTHO05D012233 7.6e-11 71.2 163 31.9
RcHm_v2.0_Chr4g0429701 Rosa chinensis HOM05D000005 ORTHO05D000012 7.6e-11 71.2 176 29.5
PGSC0003DMG403015682 Solanum tuberosum HOM05D000005 ORTHO05D000012 7.6e-11 71.2 154 35.1
Sopen11g005850 Solanum pennellii HOM05D000005 ORTHO05D000012 9.9e-11 70.9 140 34.3
PGSC0003DMG400021887 Solanum tuberosum HOM05D000005 ORTHO05D000012 9.9e-11 70.9 153 33.3
TPR.G39759 Trifolium pratense HOM05D000005 ORTHO05D000012 9.9e-11 70.9 127 35.4
Solyc11g011090.1 Solanum lycopersicum HOM05D000005 ORTHO05D000012 1.3e-10 70.5 140 33.6
BcaC04g18769 Brassica carinata HOM05D000005 ORTHO05D000012 6.4e-10 68.2 167 32.3
PGSC0003DMG400002426 Solanum tuberosum HOM05D000005 ORTHO05D000012 6.4e-10 68.2 137 34.3
Solyc11g011350.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 1.4e-09 67.0 131 35.1
RcHm_v2.0_Chr2g0124621 Rosa chinensis HOM05D000005 ORTHO05D012233 1.9e-09 66.6 147 30.6
Cc00_g25590 Coffea canephora HOM05D000005 ORTHO05D000012 2.4e-09 66.2 196 30.6
FAN26G2122 Fragaria x ananassa HOM05D000005 ORTHO05D012233 2.4e-09 66.2 147 29.3
Lj3g0010620 Lotus japonicus HOM05D000005 ORTHO05D011497 2.4e-09 66.2 140 33.6
Prupe.8G005400 Prunus persica HOM05D000005 ORTHO05D000012 2.4e-09 66.2 148 32.4
FAN19G0289 Fragaria x ananassa HOM05D000005 ORTHO05D012233 4.2e-09 65.5 147 29.3
CAN.G222.45 Capsicum annuum HOM05D000005 ORTHO05D000012 7.1e-09 64.7 135 31.9
Cc11_g00720 Coffea canephora HOM05D000005 ORTHO05D000012 7.1e-09 64.7 159 30.2
QL09p052440 Quercus lobata HOM05D000005 ORTHO05D000294 7.1e-09 64.7 105 34.3
Eucgr.C00572 Eucalyptus grandis HOM05D016032 ORTHO05D007072 9.3e-09 64.3 145 37.2
QL09p051998 Quercus lobata HOM05D000005 ORTHO05D000012 1.2e-08 63.9 204 28.4
PGSC0003DMG400018428 Solanum tuberosum HOM05D000005 ORTHO05D000012 1.2e-08 63.9 153 30.1
PGSC0003DMG400022699 Solanum tuberosum HOM05D000005 ORTHO05D000012 1.2e-08 63.9 100 38.0
Cc00_g23040 Coffea canephora HOM05D000005 ORTHO05D000012 1.6e-08 63.5 183 31.1
Cc08_g06840 Coffea canephora HOM05D000005 ORTHO05D000012 1.6e-08 63.5 196 29.1
Manes.18G115500 Manihot esculenta HOM05D000005 ORTHO05D000012 1.6e-08 63.5 115 32.2
RcHm_v2.0_Chr2g0106571 Rosa chinensis HOM05D000005 ORTHO05D012233 1.6e-08 63.5 161 30.4
PGSC0003DMG400030267 Solanum tuberosum HOM05D000005 ORTHO05D010846 1.6e-08 63.5 136 32.4
FvH4_1g16650 Fragaria vesca HOM05D000005 ORTHO05D012233 2.7e-08 62.8 147 28.6
PGSC0003DMG400016808 Solanum tuberosum HOM05D000005 ORTHO05D000012 2.7e-08 62.8 174 31.0
Cpa.g.sc2.253 Carica papaya HOM05D000005 ORTHO05D000012 3.5e-08 62.4 148 33.1
FAN23G0394 Fragaria x ananassa HOM05D000005 ORTHO05D012233 3.5e-08 62.4 147 28.6
Prupe.4G226900 Prunus persica HOM05D000005 ORTHO05D012233 3.5e-08 62.4 149 31.5
Sopen11g006130 Solanum pennellii HOM05D000005 ORTHO05D000012 3.5e-08 62.4 160 30.0
CAN.G222.47 Capsicum annuum HOM05D000005 ORTHO05D000012 4.6e-08 62.0 145 31.7
FAN26G1463 Fragaria x ananassa HOM05D000005 ORTHO05D012233 6.0e-08 61.6 120 31.7
CAN.G222.43 Capsicum annuum HOM05D000005 ORTHO05D000001 7.9e-08 61.2 143 29.4
FvH4_1g16640 Fragaria vesca HOM05D000005 ORTHO05D012233 7.9e-08 61.2 147 28.6
MD02G1044300 Malus domestica HOM05D000005 ORTHO05D000012 7.9e-08 61.2 123 34.1
Manes.02G205900 Manihot esculenta HOM05D000005 ORTHO05D000012 1.0e-07 60.8 135 31.9
FAN10G3998 Fragaria x ananassa HOM05D000005 ORTHO05D000012 1.3e-07 60.5 110 30.9
CAN.G321.20 Capsicum annuum HOM05D000005 ORTHO05D013271 1.8e-07 60.1 164 30.5
QL09p052750 Quercus lobata HOM05D000005 ORTHO05D000012 1.8e-07 60.1 165 30.3
Manes.02G206150 Manihot esculenta HOM05D000005 ORTHO05D000012 2.3e-07 59.7 135 32.6
QL03p065059 Quercus lobata HOM05D000005 ORTHO05D000012 2.3e-07 59.7 162 29.6
QL09p000406 Quercus lobata HOM05D000005 ORTHO05D000012 2.3e-07 59.7 168 29.2
QL09p052060 Quercus lobata HOM05D000005 ORTHO05D000012 2.3e-07 59.7 165 30.3
ECA233G1667 Erigeron canadensis HOM05D000005 ORTHO05D000012 3.0e-07 59.3 136 33.1
Peaxi162Scf00033g00918 Petunia axillaris HOM05D000005 ORTHO05D012501 3.0e-07 59.3 144 34.0
Solyc01g008800.3 Solanum lycopersicum HOM05D000005 ORTHO05D000012 3.0e-07 59.3 100 36.0
Dinv25477 Davidia involucrata HOM05D000005 ORTHO05D000012 3.9e-07 58.9 158 31.0
FvH4_1g16620 Fragaria vesca HOM05D000005 ORTHO05D012233 3.9e-07 58.9 146 29.5
FAN19G0622 Fragaria x ananassa HOM05D000005 ORTHO05D012233 3.9e-07 58.9 146 29.5
Manes.09G158500 Manihot esculenta HOM05D000005 ORTHO05D000012 3.9e-07 58.9 93 38.7
QL11p010312 Quercus lobata HOM05D000005 ORTHO05D000012 3.9e-07 58.9 168 31.0
RcHm_v2.0_Chr5g0064701 Rosa chinensis HOM05D000005 ORTHO05D000012 3.9e-07 58.9 175 30.3
Atru.chr11.83 Acer truncatum HOM05D000005 ORTHO05D000012 5.1e-07 58.5 195 29.7
Manes.18G115300 Manihot esculenta HOM05D000005 ORTHO05D000012 5.1e-07 58.5 115 31.3
QL09p004171 Quercus lobata HOM05D000005 ORTHO05D001748 5.1e-07 58.5 172 26.7
QL11p010296 Quercus lobata HOM05D000005 ORTHO05D000012 5.1e-07 58.5 168 31.0
CAN.G222.44 Capsicum annuum HOM05D000005 ORTHO05D000012 6.7e-07 58.2 176 29.0
CARHR195500 Cardamine hirsuta HOM05D000005 ORTHO05D000012 6.7e-07 58.2 167 27.5
QL11p010050 Quercus lobata HOM05D000005 ORTHO05D000012 6.7e-07 58.2 168 30.4
Carub.0006s1592 Capsella rubella HOM05D000005 ORTHO05D000012 8.7e-07 57.8 138 29.0
CsaV3_5G039730 Cucumis sativus L. HOM05D000005 ORTHO05D014598 8.7e-07 57.8 168 27.4
QL09p001553 Quercus lobata HOM05D000005 ORTHO05D000012 8.7e-07 57.8 166 28.3
QL11p003594 Quercus lobata HOM05D000005 ORTHO05D000012 8.7e-07 57.8 121 33.9
Sopen01g004310 Solanum pennellii HOM05D000005 ORTHO05D000012 8.7e-07 57.8 100 35.0
PGSC0003DMG400031476 Solanum tuberosum HOM05D000005 ORTHO05D000012 8.7e-07 57.8 93 38.7
Dinv25475 Davidia involucrata HOM05D000005 ORTHO05D000012 1.5e-06 57.0 73 45.2
Potri.019G004599 Populus trichocarpa HOM05D000005 ORTHO05D000012 1.5e-06 57.0 90 42.2
PGSC0003DMG401029995 Solanum tuberosum HOM05D000005 ORTHO05D001748 1.5e-06 57.0 125 32.8
Lj9C10T0 Lonicera japonica HOM05D000005 ORTHO05D001748 1.9e-06 56.6 191 29.8
PGR142G2421 Punica granatum HOM05D000005 ORTHO05D000012 1.9e-06 56.6 103 32.0
PGR142G2663 Punica granatum HOM05D000005 ORTHO05D000012 1.9e-06 56.6 99 33.3
Sp6g05500 Schrenkiella parvula HOM05D000005 ORTHO05D000012 1.9e-06 56.6 143 30.8
Lj7C417G11 Lonicera japonica HOM05D000001 ORTHO05D000003 2.5e-06 56.2 169 27.8
PGR142G2950 Punica granatum HOM05D000005 ORTHO05D000012 2.5e-06 56.2 103 32.0
PGR142G4245 Punica granatum HOM05D000005 ORTHO05D000012 2.5e-06 56.2 103 32.0
GSVIVG01012759001 Vitis vinifera HOM05D000005 ORTHO05D001748 2.5e-06 56.2 169 28.4
QL12p008244 Quercus lobata HOM05D000005 ORTHO05D000012 3.3e-06 55.8 130 30.0
arahy.Tifrunner.gnm1.ann1.Y6D0DJ Arachis hypogaea HOM05D000005 ORTHO05D011497 4.3e-06 55.5 128 32.0
Cc11_g00700 Coffea canephora HOM05D000005 ORTHO05D000012 4.3e-06 55.5 186 30.1
Prupe.8G034500 Prunus persica HOM05D000005 ORTHO05D000012 4.3e-06 55.5 151 28.5
RcHm_v2.0_Chr7g0223661 Rosa chinensis HOM05D000005 ORTHO05D000012 4.3e-06 55.5 99 34.3
GSVIVG01012762001 Vitis vinifera HOM05D000005 ORTHO05D000012 4.3e-06 55.5 140 32.9
BcaB01g01706 Brassica carinata HOM05D000005 ORTHO05D000012 5.6e-06 55.1 148 29.1
FvH4_2g20310 Fragaria vesca HOM05D000005 ORTHO05D000012 5.6e-06 55.1 84 41.7
FAN24G1486 Fragaria x ananassa HOM05D000005 ORTHO05D000012 5.6e-06 55.1 84 41.7
Gohir.D11G295400 Gossypium hirsutum HOM05D000005 ORTHO05D000012 5.6e-06 55.1 115 34.8
Gorai.007G318900 Gossypium raimondii HOM05D000005 ORTHO05D000012 5.6e-06 55.1 115 34.8
PGSC0003DMG402016981 Solanum tuberosum HOM05D000005 ORTHO05D000012 5.6e-06 55.1 64 45.3
Thecc.06G019000 Theobroma cacao HOM05D000005 ORTHO05D000012 5.6e-06 55.1 118 33.1
Atru.chr7.2349 Acer truncatum HOM05D000005 ORTHO05D000012 7.4e-06 54.7 137 27.7
AL6G46810 Arabidopsis lyrata HOM05D000005 ORTHO05D000012 7.4e-06 54.7 148 29.7
arahy.Tifrunner.gnm1.ann1.9PBB9R Arachis hypogaea HOM05D000005 ORTHO05D011497 7.4e-06 54.7 121 33.1
BcaC03g13401 Brassica carinata HOM05D000005 ORTHO05D000012 7.4e-06 54.7 178 28.7
C02p05480 Brassica napus HOM05D000005 ORTHO05D000012 7.4e-06 54.7 178 28.7
BraA02t05106Z Brassica rapa HOM05D000005 ORTHO05D000012 7.4e-06 54.7 178 28.1
FAN15G3532 Fragaria x ananassa HOM05D000005 ORTHO05D000012 7.4e-06 54.7 165 29.7
FAN20G0848 Fragaria x ananassa HOM05D000005 ORTHO05D000012 7.4e-06 54.7 166 28.3
QL09p052923 Quercus lobata HOM05D000005 ORTHO05D000012 7.4e-06 54.7 114 34.2
QL11p010027 Quercus lobata HOM05D000005 ORTHO05D000012 7.4e-06 54.7 146 31.5
PGSC0003DMG400023299 Solanum tuberosum HOM05D000005 ORTHO05D000012 7.4e-06 54.7 119 32.8
arahy.Tifrunner.gnm1.ann1.KHQI9Q Arachis hypogaea HOM05D000005 ORTHO05D000012 9.6e-06 54.3 136 30.9
CAN.G894.5 Capsicum annuum HOM05D000005 ORTHO05D000012 9.6e-06 54.3 124 32.3
Cpa.g.sc2.256 Carica papaya HOM05D000005 ORTHO05D000012 9.6e-06 54.3 154 28.6
Ciclev10023592m.g Citrus clementina HOM05D000005 ORTHO05D000012 9.6e-06 54.3 163 30.7
FvH4_2g14320 Fragaria vesca HOM05D000005 ORTHO05D000012 9.6e-06 54.3 174 25.3
Gohir.D11G295200 Gossypium hirsutum HOM05D000005 ORTHO05D000012 9.6e-06 54.3 115 33.9
Gorai.007G318500 Gossypium raimondii HOM05D000005 ORTHO05D000012 9.6e-06 54.3 115 33.9
HanXRQChr04g0095641 Helianthus annuus HOM05D000005 ORTHO05D000012 9.6e-06 54.3 148 28.4
Lj1g0024028 Lotus japonicus HOM05D000005 ORTHO05D000012 9.6e-06 54.3 114 36.0
Lj3g0019225 Lotus japonicus HOM05D000005 ORTHO05D011497 9.6e-06 54.3 85 37.6


User provided reference genes

Program Settings