Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g056640.3 Solanum lycopersicum HOM05D006039 ORTHO05D006797 4.8e-247 857.4 454 100.0
Nitab4.5_0000175g0040 Nicotiana tabacum HOM05D006039 ORTHO05D006797 3.2e-190 668.7 440 80.5
Nitab4.5_0002278g0050 Nicotiana tabacum HOM05D006039 ORTHO05D006797 4.8e-178 628.2 441 77.6
Peaxi162Scf00839g00234 Petunia axillaris HOM05D006039 ORTHO05D006797 4.9e-159 565.1 441 73.7
Dinv36292 Davidia involucrata HOM05D006039 ORTHO05D006797 6.5e-127 458.4 447 60.6
Actinidia06328 Actinidia chinensis HOM05D006039 ORTHO05D006797 5.0e-119 432.2 422 59.7
CSS0020882 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 2.1e-117 426.8 466 56.0
Cc01_g04400 Coffea canephora HOM05D006039 ORTHO05D006797 3.6e-117 426.0 432 56.5
CSS0048119 Camellia sinensis var. sinensis HOM05D006039 ORTHO05D006797 1.4e-116 424.1 466 55.6
Oeu014066.1 Olea europaea HOM05D006039 ORTHO05D006797 4.4e-115 419.1 397 59.4
MSTRG.17577 Avicennia marina HOM05D006039 ORTHO05D006797 2.1e-109 400.2 460 53.9
Lj1C361T2 Lonicera japonica HOM05D006039 ORTHO05D006797 2.8e-109 399.8 431 56.8
TAR623G0385 Trochodendron aralioides HOM05D006039 ORTHO05D006797 1.8e-108 397.1 447 53.0
Sc16g0011650 Simmondsia chinensis HOM05D006039 ORTHO05D006797 3.4e-107 392.9 465 52.0
Rhsim01G0190000 Rhododendron simsii HOM05D006039 ORTHO05D006797 5.4e-105 385.6 449 52.1
Lsat_1_v5_gn_1_67181 Lactuca sativa HOM05D006039 ORTHO05D006797 1.2e-101 374.4 455 49.9
SalBow4G0075 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.6e-101 374.0 445 52.4
SalBow4G2759 Salvia bowleyana HOM05D006039 ORTHO05D006797 1.6e-101 374.0 445 52.4
Atru.chr3.2554 Acer truncatum HOM05D006039 ORTHO05D006797 1.8e-100 370.5 475 50.3
SGA_v2.0_scaffold247G44833 Striga asiatica HOM05D006039 ORTHO05D006797 5.8e-99 365.5 454 49.6
Migut.N02301 Erythranthe guttata HOM05D006039 ORTHO05D006797 3.7e-98 362.8 455 52.1
MSTRG.12478 Avicennia marina HOM05D006039 ORTHO05D006797 4.9e-98 362.5 434 52.1
Haze_23073 Corylus avellana HOM05D006039 ORTHO05D006797 8.3e-98 361.7 469 50.7
vmacro12713 Vaccinium macrocarpon HOM05D006039 ORTHO05D006797 7.0e-97 358.6 425 52.9
MBI01_g36435_MAGBIO Magnolia biondii HOM05D006039 ORTHO05D006797 9.2e-97 358.2 448 49.8
TWI32G0154 Tripterygium wilfordii HOM05D006039 ORTHO05D006797 9.2e-97 358.2 456 50.4
Eucgr.B03667 Eucalyptus grandis HOM05D006039 ORTHO05D006797 2.7e-96 356.7 447 47.7
Thecc.09G226300 Theobroma cacao HOM05D006039 ORTHO05D006797 2.7e-96 356.7 440 50.0
ECA233G1597 Erigeron canadensis HOM05D006039 ORTHO05D006797 6.0e-96 355.5 434 50.0
GSVIVG01025314001 Vitis vinifera HOM05D006039 ORTHO05D006797 1.0e-95 354.8 407 53.3
CANSAT54G2219 Cannabis sativa HOM05D006039 ORTHO05D006797 3.0e-95 353.2 445 51.0
QL01p005703 Quercus lobata HOM05D006039 ORTHO05D006797 3.0e-95 353.2 464 48.5
Aqoxy3G00443 Aquilegia oxysepala HOM05D006039 ORTHO05D006797 8.6e-95 351.7 466 47.0
HanXRQChr13g0403991 Helianthus annuus HOM05D006039 ORTHO05D006797 4.3e-94 349.4 432 49.8
Prupe.6G022100 Prunus persica HOM05D006039 ORTHO05D006797 4.3e-94 349.4 400 52.0
Duzib168G2100 Durio zibethinus HOM05D006039 ORTHO05D006797 8.0e-93 345.1 436 48.4
Ah.06g193560 Amaranthus hybridus HOM05D006039 ORTHO05D006797 1.2e-91 341.3 478 47.7
Manes.06G167800 Manihot esculenta HOM05D006039 ORTHO05D006797 1.2e-91 341.3 459 47.1
COL.COLO4_24829 Corchorus olitorius HOM05D006039 ORTHO05D006797 1.3e-90 337.8 441 46.9
Cpa.g.sc84.90 Carica papaya HOM05D006039 ORTHO05D006797 2.2e-90 337.0 463 47.7
Manes.14G013400 Manihot esculenta HOM05D006039 ORTHO05D006797 3.7e-90 336.3 467 46.7
Sabra01G0012000 Salix brachista HOM05D006039 ORTHO05D006797 6.4e-90 335.5 447 48.1
PSO339G2813 Papaver somniferum HOM05D006039 ORTHO05D006797 3.2e-89 333.2 435 49.2
Potri.003G207400 Populus trichocarpa HOM05D006039 ORTHO05D006797 3.2e-89 333.2 449 47.7
Potri.001G017100 Populus trichocarpa HOM05D006039 ORTHO05D006797 1.2e-88 331.3 471 47.6
Ciclev10014934m.g Citrus clementina HOM05D006039 ORTHO05D006797 1.6e-88 330.9 519 44.1
Nn7g36093 Nelumbo nucifera HOM05D006039 ORTHO05D006797 4.6e-88 329.3 438 46.8
PSO384G3161 Papaver somniferum HOM05D006039 ORTHO05D006797 6.0e-88 328.9 435 49.0
CsaV3_4G024070 Cucumis sativus L. HOM05D006039 ORTHO05D006797 7.8e-88 328.6 413 50.6
Duzib150G0354 Durio zibethinus HOM05D006039 ORTHO05D006797 1.7e-87 327.4 425 48.9
CiPaw.14G122300 Carya illinoinensis HOM05D006039 ORTHO05D006797 3.0e-87 326.6 400 51.0
MELO3C014616.2 Cucumis melo HOM05D006039 ORTHO05D006797 5.1e-87 325.9 436 48.4
Migut.D00567 Erythranthe guttata HOM05D006039 ORTHO05D006797 1.1e-86 324.7 449 48.8
ClCG02G023440 Citrullus lanatus HOM05D006039 ORTHO05D006797 5.6e-86 322.4 457 47.3
Lj3g0020392 Lotus japonicus HOM05D006039 ORTHO05D006797 9.5e-86 321.6 439 47.4
Gohir.A13G216000 Gossypium hirsutum HOM05D006039 ORTHO05D006797 8.1e-85 318.5 405 49.4
Sed0010144 Sechium edule HOM05D006039 ORTHO05D006797 3.1e-84 316.6 434 46.1
DCAR_002046 Daucus carota HOM05D006039 ORTHO05D006797 6.8e-84 315.5 492 44.5
EL10Ac4g10308 Beta vulgaris HOM05D006039 ORTHO05D006797 8.9e-84 315.1 455 45.3
MD11G1028000 Malus domestica HOM05D006039 ORTHO05D006797 3.2e-81 306.6 487 42.9
Medtr2g098330 Medicago truncatula HOM05D006039 ORTHO05D006797 7.1e-81 305.4 449 43.4
Glyma.15G032500 Glycine max HOM05D006039 ORTHO05D006797 8.6e-79 298.5 462 44.6
Gohir.D13G219700 Gossypium hirsutum HOM05D006039 ORTHO05D006797 1.1e-78 298.1 405 47.2
VMungo1080G1590 Vigna mungo HOM05D006039 ORTHO05D006797 1.1e-78 298.1 434 44.7
arahy.Tifrunner.gnm1.ann1.CQR7QS Arachis hypogaea HOM05D006039 ORTHO05D006797 1.5e-78 297.7 449 45.2
RcHm_v2.0_Chr5g0077351 Rosa chinensis HOM05D006039 ORTHO05D006797 7.3e-78 295.4 422 46.4
Glyma.13G341800 Glycine max HOM05D006039 ORTHO05D006797 9.5e-78 295.0 450 44.7
Lalb_Chr22g0352291 Lupinus albus HOM05D006039 ORTHO05D006797 2.8e-77 293.5 439 44.2
THA.LOC104804971 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 1.4e-76 291.2 447 44.3
Lalb_Chr24g0396971 Lupinus albus HOM05D006039 ORTHO05D006797 5.2e-76 289.3 431 44.3
Psat5g288280 Pisum sativum HOM05D006039 ORTHO05D006797 3.4e-75 286.6 500 40.2
PGR102G2927 Punica granatum HOM05D006039 ORTHO05D006797 4.4e-75 286.2 473 44.2
Phvul.L011043 Phaseolus vulgaris HOM05D006039 ORTHO05D006797 7.6e-75 285.4 445 43.8
FAN21G1726 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.2e-73 280.0 352 48.9
FAN11G0272 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.2e-72 278.1 363 48.5
Cfa009721 Carpinus fangiana HOM05D006039 ORTHO05D006797 3.5e-72 276.6 320 53.4
FAN25G3739 Fragaria x ananassa HOM05D006039 ORTHO05D006797 3.5e-72 276.6 357 48.7
Aa31LG3G14700 Aethionema arabicum HOM05D006389 ORTHO05D007863 1.0e-71 275.0 441 42.9
CARHR200520 Cardamine hirsuta HOM05D006039 ORTHO05D006797 4.3e-70 269.6 462 40.0
Sp6g31030 Schrenkiella parvula HOM05D006039 ORTHO05D006797 4.7e-69 266.2 383 42.6
Thhalv10013519m.g Eutrema salsugineum HOM05D006039 ORTHO05D006797 5.3e-68 262.7 446 41.7
THA.LOC104799094 Tarenaya hassleriana HOM05D006039 ORTHO05D006797 2.6e-67 260.4 447 40.9
arahy.Tifrunner.gnm1.ann1.IJ2E5N Arachis hypogaea HOM05D006039 ORTHO05D006797 5.8e-67 259.2 424 44.1
AL6G23500 Arabidopsis lyrata HOM05D006039 ORTHO05D006797 1.3e-66 258.1 443 39.7
AT5G12930 Arabidopsis thaliana HOM05D006039 ORTHO05D006797 4.9e-66 256.1 386 42.5
AUR62019256 Chenopodium quinoa HOM05D006039 ORTHO05D006797 8.4e-66 255.4 463 40.8
Carub.0006s1111 Capsella rubella HOM05D006039 ORTHO05D006797 1.4e-65 254.6 452 38.5
AUR62005725 Chenopodium quinoa HOM05D006039 ORTHO05D006797 9.3e-65 251.9 460 40.0
Potri.003G207500 Populus trichocarpa HOM05D006039 ORTHO05D006797 6.0e-64 249.2 409 43.5
Hund07543 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.3e-63 248.1 274 51.8
BcaB01g05390 Brassica carinata HOM05D006389 ORTHO05D007863 2.1e-61 240.7 458 39.1
BolC3t13172H Brassica oleracea HOM05D006039 ORTHO05D006797 4.8e-61 239.6 472 37.9
TAR636G1066 Trochodendron aralioides HOM05D004785 ORTHO05D005704 6.9e-60 235.7 347 45.0
FAN16G1487 Fragaria x ananassa HOM05D006039 ORTHO05D006797 1.2e-59 235.0 314 47.5
Sabra03G0153000 Salix brachista HOM05D006039 ORTHO05D006797 2.2e-58 230.7 422 42.4
HPP92_015767 Vanilla planifolia HOM05D006039 ORTHO05D006797 4.9e-58 229.6 416 41.1
BraA03t09909Z Brassica rapa HOM05D006039 ORTHO05D006797 3.2e-57 226.9 472 37.5
Nn2g15509 Nelumbo nucifera HOM05D006039 ORTHO05D006797 3.2e-57 226.9 339 44.8
BraA02t05138Z Brassica rapa HOM05D006039 ORTHO05D006797 7.1e-57 225.7 378 40.2
C03p06660 Brassica napus HOM05D006039 ORTHO05D006797 1.6e-56 224.6 408 39.0
A03p05700 Brassica napus HOM05D006039 ORTHO05D006797 3.0e-55 220.3 471 37.6
Os09g0488600 Oryza sativa ssp. japonica HOM05D006039 ORTHO05D006797 5.1e-55 219.5 433 37.6
A02p01580 Brassica napus HOM05D006039 ORTHO05D006797 6.7e-55 219.2 440 37.5
BcaNung03603 Brassica carinata HOM05D006039 ORTHO05D006797 2.5e-54 217.2 434 37.3
ATR0815G050 Amborella trichopoda HOM05D006039 ORTHO05D006797 1.5e-51 208.0 367 42.0
BcaNung01186 Brassica carinata HOM05D006039 ORTHO05D006797 2.0e-51 207.6 429 36.8
BolC2t06525H Brassica oleracea HOM05D006039 ORTHO05D006797 2.0e-51 207.6 429 36.8
BcaB01g05389 Brassica carinata HOM05D006039 ORTHO05D006797 1.7e-50 204.5 408 37.3
Ca_01279_v3 Cicer arietinum L. HOM05D006039 ORTHO05D006797 1.7e-50 204.5 337 40.7
C02p05800 Brassica napus HOM05D006039 ORTHO05D006797 4.9e-50 203.0 365 38.4
Zm00001eb101890 Zea mays HOM05D006039 ORTHO05D006797 8.7e-47 192.2 316 40.2
Haze_23656 Corylus avellana HOM05D006039 ORTHO05D006797 1.6e-45 188.0 340 40.3
AUR62043683 Chenopodium quinoa HOM05D006039 ORTHO05D006797 2.1e-45 187.6 295 44.4
FvH4_3g43290 Fragaria vesca HOM05D006039 ORTHO05D006797 2.6e-43 180.6 247 46.2
Haze_23654 Corylus avellana HOM05D006039 ORTHO05D006797 5.8e-43 179.5 198 53.5
Haze_23653 Corylus avellana HOM05D006039 ORTHO05D006797 2.9e-42 177.2 253 46.2
Haze_23655 Corylus avellana HOM05D006039 ORTHO05D006797 5.5e-41 172.9 260 44.6
Actinidia39388 Actinidia chinensis HOM05D006039 ORTHO05D006797 9.3e-41 172.2 234 47.4
TPR.G6898 Trifolium pratense HOM05D006039 ORTHO05D006797 4.6e-40 169.9 327 38.5
CDE06G0903 Ceratophyllum demersum HOM05D000288 ORTHO05D000173 1.9e-38 164.5 150 59.3
Haze_23701 Corylus avellana HOM05D006039 ORTHO05D006797 4.3e-38 163.3 267 43.1
Cfa009719 Carpinus fangiana HOM05D006039 ORTHO05D006797 3.1e-36 157.1 220 47.3
Haze_23698 Corylus avellana HOM05D006039 ORTHO05D006797 1.2e-35 155.2 192 48.4
MELO3C003056.2 Cucumis melo HOM05D006039 ORTHO05D006797 3.8e-34 150.2 139 60.4
AUR62000084 Chenopodium quinoa HOM05D006039 ORTHO05D000067 7.2e-33 146.0 162 53.7
Hund07487 Selenicereus undatus HOM05D000288 ORTHO05D006797 1.2e-32 145.2 171 51.5
AUR62043578 Chenopodium quinoa HOM05D006039 ORTHO05D006797 1.8e-31 141.4 266 38.0
Hund07491 Selenicereus undatus HOM05D006039 ORTHO05D006797 1.8e-31 141.4 146 56.2
SHI30498 Sapria himalayana HOM05D006039 ORTHO05D000001 2.5e-30 137.5 488 29.1
Haze_23699 Corylus avellana HOM05D006039 ORTHO05D006797 2.2e-29 134.4 173 46.2
AUR62014261 Chenopodium quinoa HOM05D006039 ORTHO05D006797 6.5e-26 122.9 206 41.7
TPR.G377 Trifolium pratense HOM05D006039 ORTHO05D006797 5.1e-23 113.2 98 63.3
Lsat_1_v5_gn_1_67161 Lactuca sativa HOM05D006039 ORTHO05D006797 2.5e-17 94.4 93 57.0
Pp3c20_22990 Physcomitrium patens HOM05D022188 ORTHO05D006797 4.8e-13 80.1 92 48.9
Pp3c16_7650 Physcomitrium patens HOM05D026113 ORTHO05D006797 3.1e-12 77.4 102 45.1
Pp3c6_9630 Physcomitrium patens HOM05D026113 ORTHO05D006797 9.1e-12 75.9 92 48.9
SEGI_29391 Sequoiadendron giganteum HOM05D022188 ORTHO05D006797 1.9e-09 68.2 122 36.1
Pp3c10_11042 Physcomitrium patens HOM05D026113 ORTHO05D006797 1.2e-08 65.5 208 28.4
Pp3c23_10180 Physcomitrium patens HOM05D022188 ORTHO05D006797 3.6e-08 63.9 200 28.5
Mapoly0060s0031 Marchantia polymorpha HOM05D022188 ORTHO05D006797 5.2e-07 60.1 142 30.3


User provided reference genes

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