Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g045440.1 Solanum lycopersicum HOM05D002965 ORTHO05D011846 8.8e-173 610.1 298 100.0
CsaV3_UNG207940 Cucumis sativus L. HOM05D019464 ORTHO05D015988 2.8e-54 216.5 111 91.9
Sopen06g007640 Solanum pennellii HOM05D002965 ORTHO05D012151 1.9e-50 203.8 317 44.2
Nitab4.5_0001152g0470 Nicotiana tabacum HOM05D019464 ORTHO05D015988 1.2e-36 157.9 91 81.3
BcaB02g10431 Brassica carinata HOM05D002965 ORTHO05D015988 1.0e-35 154.8 133 62.4
Solyc00g500351.1 Solanum lycopersicum HOM05D002965 ORTHO05D011254 1.5e-31 141.0 121 65.3
Sopen05g012600 Solanum pennellii HOM05D012137 ORTHO05D011846 1.5e-31 141.0 121 65.3
BcaB04g17971 Brassica carinata HOM05D009885 ORTHO05D015988 5.7e-31 139.0 99 75.8
Solyc09g056090.1 Solanum lycopersicum HOM05D002965 ORTHO05D011846 3.2e-29 133.3 124 62.9
arahy.Tifrunner.gnm1.ann1.N76Q1G Arachis hypogaea HOM05D002965 ORTHO05D015988 3.5e-28 129.8 65 92.3
Sopen09g020260 Solanum pennellii HOM05D010604 ORTHO05D012476 7.5e-23 112.1 124 54.0
Sopen05g012840 Solanum pennellii HOM05D002965 ORTHO05D010183 6.4e-22 109.0 66 86.4
Nitab4.5_0002325g0130 Nicotiana tabacum HOM05D002965 ORTHO05D011846 8.3e-22 108.6 65 86.2
Solyc00g500226.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 8.3e-22 108.6 65 87.7
Solyc00g500262.1 Solanum lycopersicum HOM05D002965 ORTHO05D010536 8.3e-22 108.6 65 87.7
Solyc11g063480.1 Solanum lycopersicum HOM05D002965 ORTHO05D011846 8.3e-22 108.6 65 86.2
PGSC0003DMG400007773 Solanum tuberosum HOM05D002965 ORTHO05D011846 8.3e-22 108.6 65 87.7
CAN.G1.24 Capsicum annuum HOM05D002965 ORTHO05D011846 1.4e-21 107.8 56 87.5
CAN.G1673.6 Capsicum annuum HOM05D002965 ORTHO05D011846 5.4e-21 105.9 65 86.2
CAN.G1741.7 Capsicum annuum HOM05D002965 ORTHO05D011846 5.4e-21 105.9 65 86.2
Solyc01g017250.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 5.4e-21 105.9 57 82.5
Nitab4.5_0000031g0100 Nicotiana tabacum HOM05D002965 ORTHO05D011846 3.5e-20 103.2 65 84.6
Nitab4.5_0001152g1030 Nicotiana tabacum HOM05D002965 ORTHO05D011846 9.5e-18 95.1 98 58.2
FAN17G0696 Fragaria x ananassa HOM05D027054 ORTHO05D015988 6.2e-17 92.4 113 50.4
CAN.G277.5 Capsicum annuum HOM05D002965 ORTHO05D011846 2.9e-14 83.6 65 69.2
Solyc06g074570.2 Solanum lycopersicum HOM05D016762 ORTHO05D019837 4.1e-13 79.7 39 97.4
Peaxi162Scf00030g01518 Petunia axillaris HOM05D019464 ORTHO05D015988 7.1e-13 79.0 37 94.6
Sed0010694 Sechium edule HOM05D019464 ORTHO05D015988 7.1e-13 79.0 37 94.6
Sed0018933 Sechium edule HOM05D019464 ORTHO05D015988 7.1e-13 79.0 37 94.6
Nitab4.5_0000172g0770 Nicotiana tabacum HOM05D002965 ORTHO05D011846 7.8e-12 75.5 65 70.8
Nitab4.5_0002418g0230 Nicotiana tabacum HOM05D002965 ORTHO05D011846 7.8e-12 75.5 122 44.3
arahy.Tifrunner.gnm1.ann1.ZJEP1E Arachis hypogaea HOM05D000963 ORTHO05D011791 1.3e-11 74.7 80 52.5
Peaxi162Scf00224g00612 Petunia axillaris HOM05D012761 ORTHO05D013554 1.7e-11 74.3 37 89.2
CBR_g32458 Chara braunii HOM05D002965 ORTHO05D015988 3.0e-11 73.6 40 80.0
arahy.Tifrunner.gnm1.ann1.A049RL Arachis hypogaea HOM05D000963 ORTHO05D005131 5.1e-11 72.8 120 38.3
arahy.Tifrunner.gnm1.ann1.KZ3I51 Arachis hypogaea HOM05D010604 ORTHO05D012476 1.5e-10 71.2 51 74.5
ClCG06G009300 Citrullus lanatus HOM05D019464 ORTHO05D015988 1.5e-10 71.2 37 86.5
Solyc00g500039.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.2e-09 68.2 80 48.8
Solyc00g500044.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.2e-09 68.2 80 48.8
Solyc00g500083.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.2e-09 68.2 80 48.8
Solyc00g500301.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.2e-09 68.2 80 48.8
Solyc00g500325.1 Solanum lycopersicum HOM05D000963 ORTHO05D005131 1.2e-09 68.2 80 48.8
Nitab4.5_0003267g0070 Nicotiana tabacum HOM05D002965 ORTHO05D011846 3.6e-09 66.6 41 85.4
Solyc09g057840.1 Solanum lycopersicum HOM05D002965 ORTHO05D390637 8.1e-09 65.5 34 82.4
Nitab4.5_0000859g0050 Nicotiana tabacum HOM05D002965 ORTHO05D011846 1.1e-08 65.1 48 70.8
Nitab4.5_0001005g0030 Nicotiana tabacum HOM05D002965 ORTHO05D011846 1.5e-07 61.2 48 72.9
Nitab4.5_0005246g0060 Nicotiana tabacum HOM05D002965 ORTHO05D011846 2.6e-07 60.5 39 79.5
Nitab4.5_0006806g0160 Nicotiana tabacum HOM05D002965 ORTHO05D011846 2.6e-07 60.5 121 39.7
Nitab4.5_0000522g0070 Nicotiana tabacum HOM05D002965 ORTHO05D011846 3.4e-07 60.1 40 77.5
C09p39380 Brassica napus HOM05D000963 ORTHO05D005131 2.2e-06 57.4 88 43.2
Sopen12g028350 Solanum pennellii HOM05D000004 ORTHO05D000034 2.9e-06 57.0 28 92.9


User provided reference genes

Program Settings