Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g045040.2 Solanum lycopersicum HOM05D006784 ORTHO05D008508 2.5e-173 612.1 318 100.0
Sopen11g020490 Solanum pennellii HOM05D006784 ORTHO05D008508 1.2e-111 407.1 208 98.6
CAN.G567.5 Capsicum annuum HOM05D006784 ORTHO05D008508 5.8e-106 388.3 208 93.8
Nitab4.5_0001489g0040 Nicotiana tabacum HOM05D006784 ORTHO05D008508 1.2e-90 337.4 190 88.9
Nitab4.5_0000079g0180 Nicotiana tabacum HOM05D006784 ORTHO05D008508 8.7e-86 321.2 244 69.7
CiPaw.03G012700 Carya illinoinensis HOM05D006784 ORTHO05D008508 2.5e-85 319.7 255 63.9
Actinidia01543 Actinidia chinensis HOM05D006784 ORTHO05D008508 9.0e-83 311.2 212 71.7
Dinv08766 Davidia involucrata HOM05D006784 ORTHO05D008508 2.2e-81 306.6 204 73.5
Lj3g0009982 Lotus japonicus HOM05D006784 ORTHO05D008508 2.9e-81 306.2 243 61.7
Psat5g232280 Pisum sativum HOM05D006784 ORTHO05D008508 8.4e-81 304.7 271 58.3
Oeu035045.1 Olea europaea HOM05D006784 ORTHO05D008508 1.9e-80 303.5 205 71.2
TAR376G1107 Trochodendron aralioides HOM05D006784 ORTHO05D008508 3.2e-80 302.8 206 71.4
CSS0003574 Camellia sinensis var. sinensis HOM05D006784 ORTHO05D008508 6.0e-79 298.5 206 71.8
Manes.02G202800 Manihot esculenta HOM05D006784 ORTHO05D008508 7.9e-79 298.1 208 68.8
GSVIVG01037159001 Vitis vinifera HOM05D006784 ORTHO05D008508 1.0e-78 297.7 206 69.9
Cc10_g16080 Coffea canephora HOM05D006784 ORTHO05D008508 1.5e-77 293.9 206 67.5
Prupe.8G003500 Prunus persica HOM05D006784 ORTHO05D008508 1.5e-77 293.9 216 68.1
QL09p001285 Quercus lobata HOM05D006784 ORTHO05D008508 1.9e-77 293.5 208 70.7
Lj7A416T40 Lonicera japonica HOM05D006784 ORTHO05D008508 2.2e-76 290.0 225 66.7
Atru.chr13.2579 Acer truncatum HOM05D006784 ORTHO05D008508 3.7e-76 289.3 212 66.0
RcHm_v2.0_Chr6g0249611 Rosa chinensis HOM05D006784 ORTHO05D008508 3.1e-75 286.2 212 66.0
Thecc.08G168600 Theobroma cacao HOM05D006784 ORTHO05D008508 5.3e-75 285.4 206 68.9
Aqoxy5G01860 Aquilegia oxysepala HOM05D006784 ORTHO05D008508 1.2e-74 284.3 221 62.9
DCAR_003507 Daucus carota HOM05D006784 ORTHO05D008508 1.2e-74 284.3 206 65.0
Sabra13G0081300 Salix brachista HOM05D006784 ORTHO05D008508 2.6e-74 283.1 205 65.4
Potri.013G095300 Populus trichocarpa HOM05D006784 ORTHO05D008508 3.4e-74 282.7 205 65.9
Migut.C01398 Erythranthe guttata HOM05D006784 ORTHO05D008508 4.5e-74 282.3 203 67.0
TPR.G25500 Trifolium pratense HOM05D006784 ORTHO05D008508 5.9e-74 282.0 205 64.9
Medtr3g006210 Medicago truncatula HOM05D006784 ORTHO05D008508 1.3e-73 280.8 205 64.9
Glyma.04G110300 Glycine max HOM05D006784 ORTHO05D008508 1.7e-73 280.4 205 64.4
Ca_13985_v3 Cicer arietinum L. HOM05D006784 ORTHO05D008508 1.1e-72 277.7 221 60.2
CANSAT11G0581 Cannabis sativa HOM05D006784 ORTHO05D008508 3.2e-72 276.2 206 66.5
Nn5g27234 Nelumbo nucifera HOM05D006784 ORTHO05D008508 1.6e-71 273.9 206 67.0
FvH4_2g00320 Fragaria vesca HOM05D006784 ORTHO05D008508 2.7e-71 273.1 212 63.2
Lalb_Chr15g0080091 Lupinus albus HOM05D006784 ORTHO05D008508 2.7e-71 273.1 206 62.6
FAN24G3159 Fragaria x ananassa HOM05D006784 ORTHO05D008508 6.1e-71 271.9 216 62.0
Gorai.009G262200 Gossypium raimondii HOM05D006784 ORTHO05D008508 3.9e-70 269.2 206 64.1
ClCG08G001730 Citrullus lanatus HOM05D006784 ORTHO05D008508 6.7e-70 268.5 199 67.3
Rhsim12G0001900 Rhododendron simsii HOM05D006784 ORTHO05D008508 6.7e-70 268.5 211 63.5
Sed0009601 Sechium edule HOM05D006784 ORTHO05D008508 6.7e-70 268.5 206 65.0
MBI03_g07138_MAGBIO Magnolia biondii HOM05D006784 ORTHO05D008508 8.8e-70 268.1 205 65.4
MELO3C022124.2 Cucumis melo HOM05D006784 ORTHO05D008508 2.0e-69 266.9 209 63.6
PSO761G0491 Papaver somniferum HOM05D006784 ORTHO05D008508 2.2e-68 263.5 205 60.0
Ciclev10021219m.g Citrus clementina HOM05D006784 ORTHO05D008508 2.8e-68 263.1 211 61.6
Glyma.06G323800 Glycine max HOM05D006784 ORTHO05D008508 1.4e-67 260.8 205 62.0
Phvul.005G002500 Phaseolus vulgaris HOM05D006784 ORTHO05D008508 1.4e-67 260.8 204 60.8
arahy.Tifrunner.gnm1.ann1.9TUP5I Arachis hypogaea HOM05D006784 ORTHO05D008508 2.4e-67 260.0 205 60.5
Eucgr.F02928 Eucalyptus grandis HOM05D006784 ORTHO05D008508 2.4e-67 260.0 210 61.4
EL10Ac1g01284 Beta vulgaris HOM05D006784 ORTHO05D008508 4.1e-67 259.2 211 61.1
arahy.Tifrunner.gnm1.ann1.VA03RP Arachis hypogaea HOM05D006784 ORTHO05D008508 5.3e-67 258.8 205 60.0
ATR1089G080 Amborella trichopoda HOM05D006784 ORTHO05D008508 9.1e-67 258.1 211 59.2
CARHR064620 Cardamine hirsuta HOM05D006784 ORTHO05D008508 1.2e-66 257.7 209 58.9
PSO210G0863 Papaver somniferum HOM05D006784 ORTHO05D008508 2.6e-66 256.5 205 57.6
Sc23g0000020 Simmondsia chinensis HOM05D006784 ORTHO05D008508 1.7e-65 253.8 206 60.7
Sp5g26500 Schrenkiella parvula HOM05D006784 ORTHO05D008508 2.2e-65 253.4 205 59.0
CsaV3_5G039470 Cucumis sativus L. HOM05D006784 ORTHO05D008508 2.9e-65 253.1 208 62.0
VMungo1080G0261 Vigna mungo HOM05D001255 ORTHO05D001246 8.5e-65 251.5 205 57.1
AT1G71340 Arabidopsis thaliana HOM05D006784 ORTHO05D008508 1.1e-64 251.1 209 56.9
Thhalv10019786m.g Eutrema salsugineum HOM05D006784 ORTHO05D008508 1.1e-64 251.1 209 57.4
ECA232G1810 Erigeron canadensis HOM05D006784 ORTHO05D008508 1.9e-64 250.4 205 59.0
BraA07t31326Z Brassica rapa HOM05D006784 ORTHO05D008508 2.5e-64 250.0 209 56.9
AL2G31000 Arabidopsis lyrata HOM05D006784 ORTHO05D008508 3.2e-64 249.6 209 57.4
Aa31LG4G9210 Aethionema arabicum HOM05D006784 ORTHO05D008508 7.2e-64 248.4 210 58.6
A07p37620 Brassica napus HOM05D006784 ORTHO05D008508 1.2e-63 247.7 209 56.5
HanXRQChr09g0266871 Helianthus annuus HOM05D006784 ORTHO05D008508 1.2e-63 247.7 205 59.0
Carub.0002s1820 Capsella rubella HOM05D006784 ORTHO05D008508 2.1e-63 246.9 209 56.5
BcaB03g14890 Brassica carinata HOM05D006784 ORTHO05D008508 7.9e-63 245.0 209 56.0
Cpa.g.sc142.7 Carica papaya HOM05D006784 ORTHO05D008508 3.0e-62 243.0 210 58.6
unitig_46.g17979 Utricularia gibba HOM05D006784 ORTHO05D008508 3.9e-62 242.7 204 56.9
THA.LOC104809757 Tarenaya hassleriana HOM05D006784 ORTHO05D008508 6.7e-62 241.9 203 59.6
C06p45390 Brassica napus HOM05D006784 ORTHO05D008508 9.7e-61 238.0 201 57.2
BolC6t39596H Brassica oleracea HOM05D006784 ORTHO05D008508 1.7e-60 237.3 201 57.2
Lsat_1_v5_gn_4_133060 Lactuca sativa HOM05D006784 ORTHO05D008508 2.2e-60 236.9 194 61.3
SGA_v2.0_scaffold118G32637 Striga asiatica HOM05D006784 ORTHO05D008508 2.8e-60 236.5 212 59.4
Hund26939 Selenicereus undatus HOM05D006784 ORTHO05D008508 6.3e-60 235.3 205 54.6
BcaC08g46565 Brassica carinata HOM05D006784 ORTHO05D008508 8.2e-60 235.0 201 56.7
HPP92_019449 Vanilla planifolia HOM05D006784 ORTHO05D008508 3.1e-59 233.0 205 57.6
AUR62038543 Chenopodium quinoa HOM05D006784 ORTHO05D008508 3.9e-54 216.1 205 57.1
SEGI_09486 Sequoiadendron giganteum HOM05D006784 ORTHO05D008508 3.3e-53 213.0 209 50.7
AUR62013392 Chenopodium quinoa HOM05D006784 ORTHO05D008508 3.7e-52 209.5 205 55.6
Duzib177G0427 Durio zibethinus HOM05D006784 ORTHO05D008508 2.0e-50 203.8 127 74.8
CDE08G1443 Ceratophyllum demersum HOM05D006784 ORTHO05D008508 1.3e-49 201.1 212 51.4
TWI12G0477 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 1.7e-49 200.7 152 65.8
COL.COLO4_25079 Corchorus olitorius HOM05D006784 ORTHO05D008508 2.2e-49 200.3 122 76.2
FAN19G1248 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.1e-48 198.0 154 61.7
Gohir.A05G248533 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.9e-48 197.2 158 59.5
Haze_14004 Corylus avellana HOM05D006784 ORTHO05D008508 1.0e-46 191.4 184 54.9
vmacro00953 Vaccinium macrocarpon HOM05D006784 ORTHO05D008508 2.3e-46 190.3 179 54.7
Zm00001eb167850 Zea mays HOM05D006784 ORTHO05D008508 8.8e-46 188.3 221 45.2
PGR119G1188 Punica granatum HOM05D006784 ORTHO05D008508 3.3e-45 186.4 236 45.8
Peaxi162Scf00078g01017 Petunia axillaris HOM05D006784 ORTHO05D008508 8.3e-44 181.8 97 91.8
PGSC0003DMG402006664 Solanum tuberosum HOM05D006784 ORTHO05D008508 1.4e-43 181.0 94 96.8
Hma1.2p1_0238F.1_g099740 Hydrangea macrophylla HOM05D006784 ORTHO05D008508 2.4e-43 180.3 126 69.0
Mapoly0041s0058 Marchantia polymorpha HOM05D006784 ORTHO05D008508 5.0e-41 172.6 209 39.2
TWI12G0001 Tripterygium wilfordii HOM05D006784 ORTHO05D008508 5.0e-41 172.6 165 55.2
HPP92_019452 Vanilla planifolia HOM05D006784 ORTHO05D008508 2.1e-39 167.2 126 62.7
Ah.05g170450 Amaranthus hybridus HOM05D006784 ORTHO05D008508 8.0e-39 165.2 213 46.5
AagrBONN_evm.TU.Sc2ySwM_344.2721 Anthoceros agrestis HOM05D006784 ORTHO05D008508 5.2e-30 136.0 213 38.0
MD05G1006200 Malus domestica HOM05D006784 ORTHO05D008508 6.6e-25 119.0 80 67.5
CBR_g18896 Chara braunii HOM05D006784 ORTHO05D008508 2.0e-21 107.5 162 32.1
Gorai.005G166200 Gossypium raimondii HOM05D006784 ORTHO05D008508 4.4e-21 106.3 89 58.4
Gohir.D08G237350 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.3e-20 104.8 89 57.3
Cre02.g115750 Chlamydomonas reinhardtii HOM05D006784 ORTHO05D008508 3.6e-15 86.7 244 27.5
FAN20G2921 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.8e-14 84.3 162 37.0
FAN20G2925 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.8e-14 84.3 162 37.0
Gohir.D05G250801 Gossypium hirsutum HOM05D006784 ORTHO05D008508 1.3e-12 78.2 65 61.5
FAN24G0543 Fragaria x ananassa HOM05D006784 ORTHO05D008508 1.4e-11 74.7 156 34.6
MCO03G046 Micromonas commoda HOM05D006784 ORTHO05D008508 4.6e-10 69.7 221 25.3
FvH4_2g04920 Fragaria vesca HOM05D006784 ORTHO05D008508 1.7e-09 67.8 152 32.9
FvH4_2g01030 Fragaria vesca HOM05D006784 ORTHO05D005195 7.3e-08 62.4 45 66.7
FAN20G2451 Fragaria x ananassa HOM05D009889 ORTHO05D003215 6.2e-07 59.3 43 67.4
Gorai.004G102800 Gossypium raimondii HOM05D006784 ORTHO05D008508 5.2e-06 56.2 41 63.4


User provided reference genes

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