Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g045030.2 Solanum lycopersicum HOM05D004360 ORTHO05D005195 4.1e-105 384.8 201 100.0
Sopen11g020480 Solanum pennellii HOM05D004360 ORTHO05D005195 3.3e-99 365.2 201 95.5
PGSC0003DMG400006668 Solanum tuberosum HOM05D004360 ORTHO05D005195 3.4e-88 328.6 201 86.6
Nitab4.5_0000079g0160 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.0e-80 302.8 201 79.6
Peaxi162Scf00078g00103 Petunia axillaris HOM05D004360 ORTHO05D005195 1.7e-79 299.7 201 76.6
CAN.G970.20 Capsicum annuum HOM05D004360 ORTHO05D005195 2.5e-78 295.8 209 77.5
Hma1.2p1_0016F.1_g010960 Hydrangea macrophylla HOM05D004360 ORTHO05D005195 4.7e-69 265.0 201 70.1
PGSC0003DMG400033136 Solanum tuberosum HOM05D004360 ORTHO05D005195 1.8e-68 263.1 201 67.7
Nitab4.5_0007335g0050 Nicotiana tabacum HOM05D004360 ORTHO05D005195 2.3e-68 262.7 201 70.6
Sopen06g022920 Solanum pennellii HOM05D004360 ORTHO05D005195 1.7e-66 256.5 201 66.2
Solyc06g064450.3 Solanum lycopersicum HOM05D004360 ORTHO05D005195 2.8e-66 255.8 201 66.2
Peaxi162Scf00818g00320 Petunia axillaris HOM05D004360 ORTHO05D005195 3.7e-66 255.4 177 73.4
Nitab4.5_0007657g0070 Nicotiana tabacum HOM05D004360 ORTHO05D005195 4.8e-66 255.0 208 68.3
Lj7A416T39 Lonicera japonica HOM05D004360 ORTHO05D005195 8.3e-66 254.2 178 72.5
CSS0027083 Camellia sinensis var. sinensis HOM05D004360 ORTHO05D005195 1.1e-65 253.8 193 71.5
SGA_v2.0_scaffold118G32638 Striga asiatica HOM05D004360 ORTHO05D005195 1.1e-65 253.8 203 67.0
GSVIVG01037160001 Vitis vinifera HOM05D004360 ORTHO05D005195 5.4e-65 251.5 193 69.9
Oeu028624.1 Olea europaea HOM05D004360 ORTHO05D005195 7.0e-65 251.1 220 62.3
TWI12G0674 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 1.2e-64 250.4 191 71.7
Actinidia01542 Actinidia chinensis HOM05D004360 ORTHO05D005195 2.0e-64 249.6 198 69.2
CAN.G14.46 Capsicum annuum HOM05D004360 ORTHO05D005195 2.7e-64 249.2 192 67.7
Oeu020627.1 Olea europaea HOM05D004360 ORTHO05D005195 3.5e-64 248.8 199 65.8
Manes.02G202700 Manihot esculenta HOM05D004360 ORTHO05D005195 2.3e-63 246.1 193 67.9
Glyma.04G110500 Glycine max HOM05D004360 ORTHO05D005195 3.8e-63 245.4 193 67.9
Glyma.06G323900 Glycine max HOM05D004360 ORTHO05D005195 6.6e-63 244.6 193 67.4
TPR.G25525 Trifolium pratense HOM05D004360 ORTHO05D005195 3.3e-62 242.3 198 65.2
MSTRG.1609 Avicennia marina HOM05D004360 ORTHO05D005195 4.2e-62 241.9 203 65.5
Potri.003G048300 Populus trichocarpa HOM05D004360 ORTHO05D005195 5.5e-62 241.5 191 68.1
TAR628G1251 Trochodendron aralioides HOM05D004360 ORTHO05D005195 7.2e-62 241.1 189 67.7
QL09p001278 Quercus lobata HOM05D004360 ORTHO05D005195 1.2e-61 240.4 192 65.1
Potri.013G095200 Populus trichocarpa HOM05D004360 ORTHO05D005195 1.6e-61 240.0 191 66.5
PGR083G1110 Punica granatum HOM05D004360 ORTHO05D005195 1.6e-61 240.0 191 64.9
arahy.Tifrunner.gnm1.ann1.4Y3JNF Arachis hypogaea HOM05D004360 ORTHO05D005195 2.1e-61 239.6 193 65.3
MELO3C008103.2 Cucumis melo HOM05D004360 ORTHO05D005195 2.1e-61 239.6 191 69.1
CsaV3_2G033320 Cucumis sativus L. HOM05D004360 ORTHO05D005195 2.8e-61 239.2 191 68.6
Lj3g0027106 Lotus japonicus HOM05D004360 ORTHO05D005195 2.8e-61 239.2 194 64.9
THA.LOC104806751 Tarenaya hassleriana HOM05D004360 ORTHO05D005195 3.6e-61 238.8 161 73.3
COL.COLO4_25070 Corchorus olitorius HOM05D004360 ORTHO05D005195 4.7e-61 238.4 190 68.4
Actinidia29366 Actinidia chinensis HOM05D004360 ORTHO05D005195 6.1e-61 238.0 229 57.6
A09p32780 Brassica napus HOM05D004360 ORTHO05D005195 8.0e-61 237.7 161 72.7
BraA09t38813Z Brassica rapa HOM05D004360 ORTHO05D005195 8.0e-61 237.7 161 72.7
Nn5g27232 Nelumbo nucifera HOM05D004360 ORTHO05D005195 2.3e-60 236.1 190 66.8
DCAR_014061 Daucus carota HOM05D004360 ORTHO05D005195 3.0e-60 235.7 200 61.0
BcaC08g43849 Brassica carinata HOM05D004360 ORTHO05D005195 4.0e-60 235.3 164 72.6
BolC6t36383H Brassica oleracea HOM05D004360 ORTHO05D005195 4.0e-60 235.3 164 72.6
Manes.18G109100 Manihot esculenta HOM05D004360 ORTHO05D005195 4.0e-60 235.3 193 66.3
Thecc.08G168700 Theobroma cacao HOM05D004360 ORTHO05D005195 4.0e-60 235.3 185 69.2
Medtr3g006190 Medicago truncatula HOM05D004360 ORTHO05D005195 5.2e-60 235.0 193 63.7
AL1G47880 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 6.8e-60 234.6 159 73.6
C06p12320 Brassica napus HOM05D004360 ORTHO05D005195 8.9e-60 234.2 164 72.0
CANSAT56G1596 Cannabis sativa HOM05D004360 ORTHO05D005195 8.9e-60 234.2 190 65.8
MD05G1006100 Malus domestica HOM05D004360 ORTHO05D005195 1.2e-59 233.8 193 65.3
Psat5g232320 Pisum sativum HOM05D004360 ORTHO05D005195 1.5e-59 233.4 179 67.6
Gohir.A05G248500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.0e-59 233.0 190 66.3
Eucgr.F04085 Eucalyptus grandis HOM05D004360 ORTHO05D005195 2.6e-59 232.6 200 62.0
Thhalv10008879m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 2.6e-59 232.6 159 73.6
Carub.0001s3168 Capsella rubella HOM05D004360 ORTHO05D005195 5.7e-59 231.5 168 70.2
Gohir.D05G250900 Gossypium hirsutum HOM05D004360 ORTHO05D005195 5.7e-59 231.5 190 65.8
Gorai.009G262300 Gossypium raimondii HOM05D004360 ORTHO05D005195 5.7e-59 231.5 190 65.8
Duzib116G0053 Durio zibethinus HOM05D004360 ORTHO05D005195 7.5e-59 231.1 190 67.4
BcaB07g32992 Brassica carinata HOM05D004360 ORTHO05D005195 9.8e-59 230.7 164 72.6
ClCG11G008280 Citrullus lanatus HOM05D004360 ORTHO05D005195 1.3e-58 230.3 186 69.4
Thhalv10029009m.g Eutrema salsugineum HOM05D004360 ORTHO05D005195 1.7e-58 229.9 160 71.9
CDE08G1539 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 2.2e-58 229.6 190 62.1
MBI03_g07140_MAGBIO Magnolia biondii HOM05D004360 ORTHO05D005195 2.2e-58 229.6 191 62.8
Phvul.005G002300 Phaseolus vulgaris HOM05D004360 ORTHO05D005195 2.8e-58 229.2 180 68.3
AUR62013395 Chenopodium quinoa HOM05D004360 ORTHO05D005195 3.7e-58 228.8 197 63.5
VMungo1080G0197 Vigna mungo HOM05D004360 ORTHO05D005195 3.7e-58 228.8 191 64.9
Ciclev10022474m.g Citrus clementina HOM05D004360 ORTHO05D005195 4.9e-58 228.4 154 76.6
Cc10_g16090 Coffea canephora HOM05D004360 ORTHO05D005195 4.9e-58 228.4 190 63.7
AUR62038546 Chenopodium quinoa HOM05D004360 ORTHO05D005195 6.3e-58 228.0 197 62.9
Sp6g07270 Schrenkiella parvula HOM05D004360 ORTHO05D005195 8.3e-58 227.6 165 70.3
CARHR261230 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.1e-57 227.3 174 68.4
Prupe.8G003400 Prunus persica HOM05D004360 ORTHO05D005195 1.4e-57 226.9 185 68.1
Lalb_Chr18g0048451 Lupinus albus HOM05D004360 ORTHO05D005195 1.8e-57 226.5 191 62.3
A02p26710 Brassica napus HOM05D004360 ORTHO05D005195 2.4e-57 226.1 177 66.7
BraA02t07674Z Brassica rapa HOM05D004360 ORTHO05D005195 2.4e-57 226.1 177 66.7
Carub.0006s2871 Capsella rubella HOM05D004360 ORTHO05D005195 2.4e-57 226.1 174 66.7
AL6G43950 Arabidopsis lyrata HOM05D004360 ORTHO05D005195 3.1e-57 225.7 164 70.1
AT4G10140 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 4.1e-57 225.3 174 67.2
ATR1089G020 Amborella trichopoda HOM05D004360 ORTHO05D005195 5.4e-57 224.9 195 60.5
PSO761G0584 Papaver somniferum HOM05D004360 ORTHO05D005195 5.4e-57 224.9 190 64.7
BcaB05g23914 Brassica carinata HOM05D004360 ORTHO05D005195 7.0e-57 224.6 177 66.1
BcaC03g16418 Brassica carinata HOM05D004360 ORTHO05D005195 7.0e-57 224.6 177 66.1
C02p42460 Brassica napus HOM05D004360 ORTHO05D005195 7.0e-57 224.6 177 66.1
AUR62038559 Chenopodium quinoa HOM05D004360 ORTHO05D005195 7.0e-57 224.6 168 69.0
Sed0002471 Sechium edule HOM05D004360 ORTHO05D005195 9.2e-57 224.2 168 70.2
Sed0011254 Sechium edule HOM05D004360 ORTHO05D005195 1.2e-56 223.8 152 75.0
Hund16918 Selenicereus undatus HOM05D004360 ORTHO05D005195 1.2e-56 223.8 193 60.6
Atru.chr13.2581 Acer truncatum HOM05D004360 ORTHO05D005195 1.6e-56 223.4 193 61.1
unitig_8.g4904 Utricularia gibba HOM05D004360 ORTHO05D005195 5.9e-56 221.5 195 56.9
FvH4_2g00310 Fragaria vesca HOM05D004360 ORTHO05D005195 7.8e-56 221.1 189 64.6
Aqoxy5G01853 Aquilegia oxysepala HOM05D004360 ORTHO05D005195 1.0e-55 220.7 199 60.3
FAN20G2250 Fragaria x ananassa HOM05D004360 ORTHO05D005195 1.0e-55 220.7 187 65.8
Aa31LG6G7960 Aethionema arabicum HOM05D004360 ORTHO05D005195 2.3e-55 219.5 167 68.9
RcHm_v2.0_Chr6g0249591 Rosa chinensis HOM05D004360 ORTHO05D005195 2.3e-55 219.5 185 64.9
EL10Ac1g01286 Beta vulgaris HOM05D004360 ORTHO05D005195 3.8e-55 218.8 172 66.9
A09p28790 Brassica napus HOM05D004360 ORTHO05D005195 3.8e-55 218.8 174 66.1
PSO210G5265 Papaver somniferum HOM05D004360 ORTHO05D005195 3.8e-55 218.8 186 63.4
C09p36560 Brassica napus HOM05D004360 ORTHO05D005195 1.5e-54 216.9 147 75.5
MD10G1002100 Malus domestica HOM05D004360 ORTHO05D005195 1.5e-54 216.9 188 63.3
TWI18G1157 Tripterygium wilfordii HOM05D004360 ORTHO05D005195 2.5e-54 216.1 172 68.6
HPP92_001197 Vanilla planifolia HOM05D004360 ORTHO05D005195 9.5e-54 214.2 190 58.9
arahy.Tifrunner.gnm1.ann1.19X5J5 Arachis hypogaea HOM05D004360 ORTHO05D005195 1.6e-53 213.4 175 65.1
Rhsim12G0001800 Rhododendron simsii HOM05D004360 ORTHO05D005195 1.6e-53 213.4 271 50.2
Aa31LG9G11860 Aethionema arabicum HOM05D004360 ORTHO05D005195 6.1e-53 211.5 186 62.4
Lsat_1_v5_gn_6_109600 Lactuca sativa HOM05D004360 ORTHO05D005195 1.8e-52 209.9 170 64.7
Os05g0105500 Oryza sativa ssp. japonica HOM05D004360 ORTHO05D005195 2.3e-52 209.5 173 59.5
SEGI_09604 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 3.1e-52 209.1 193 56.5
Lalb_Chr01g0008181 Lupinus albus HOM05D004360 ORTHO05D005195 5.2e-52 208.4 193 58.5
Medtr4g030060 Medicago truncatula HOM05D004360 ORTHO05D005195 8.9e-52 207.6 191 59.7
Lsat_1_v5_gn_1_24560 Lactuca sativa HOM05D004360 ORTHO05D005195 1.5e-51 206.8 199 58.8
HanXRQChr12g0369241 Helianthus annuus HOM05D004360 ORTHO05D005195 2.0e-51 206.5 195 59.0
Psat7g229800 Pisum sativum HOM05D004360 ORTHO05D005195 2.0e-51 206.5 191 58.6
HanXRQChr08g0226271 Helianthus annuus HOM05D004360 ORTHO05D005195 2.6e-51 206.1 169 63.9
HPP92_009217 Vanilla planifolia HOM05D004360 ORTHO05D005195 1.3e-50 203.8 157 65.6
BraA09t38441Z Brassica rapa HOM05D004360 ORTHO05D005195 1.7e-50 203.4 203 56.7
CDE02G3351 Ceratophyllum demersum HOM05D004360 ORTHO05D005195 2.9e-50 202.6 176 61.9
Gohir.D08G249500 Gossypium hirsutum HOM05D004360 ORTHO05D005195 2.9e-50 202.6 160 64.4
Gorai.004G266100 Gossypium raimondii HOM05D004360 ORTHO05D005195 2.9e-50 202.6 160 64.4
Migut.C01399 Erythranthe guttata HOM05D004360 ORTHO05D005195 3.7e-50 202.2 194 59.8
Gohir.A08G229200 Gossypium hirsutum HOM05D004360 ORTHO05D005195 3.7e-50 202.2 160 63.8
BolC9t56489H Brassica oleracea HOM05D004360 ORTHO05D005195 6.4e-50 201.4 176 63.1
BolC2t10286H Brassica oleracea HOM05D004360 ORTHO05D005195 1.9e-49 199.9 159 66.0
BcaC04g21022 Brassica carinata HOM05D004360 ORTHO05D005195 1.2e-48 197.2 139 72.7
ECA247G3060 Erigeron canadensis HOM05D004360 ORTHO05D005195 3.5e-48 195.7 193 58.0
HanXRQChr05g0150501 Helianthus annuus HOM05D004360 ORTHO05D005195 4.6e-48 195.3 193 54.9
Zm00001eb289060 Zea mays HOM05D004360 ORTHO05D005195 1.3e-47 193.7 168 58.3
CiPaw.03G012600 Carya illinoinensis HOM05D004360 ORTHO05D005195 1.1e-46 190.7 120 75.8
Haze_14005 Corylus avellana HOM05D004360 ORTHO05D005195 1.9e-46 189.9 122 77.9
Sabra13G0081200 Salix brachista HOM05D004360 ORTHO05D005195 4.3e-46 188.7 121 78.5
Zm00001eb207120 Zea mays HOM05D004360 ORTHO05D005195 9.5e-46 187.6 168 56.0
Sc06g0000070 Simmondsia chinensis HOM05D004360 ORTHO05D005195 4.7e-45 185.3 121 72.7
AT1G33490 Arabidopsis thaliana HOM05D004360 ORTHO05D005195 1.4e-44 183.7 120 76.7
Sp1g28930 Schrenkiella parvula HOM05D004360 ORTHO05D002912 5.2e-44 181.8 121 76.0
CARHR032930 Cardamine hirsuta HOM05D004360 ORTHO05D005195 1.2e-43 180.6 121 74.4
Duzib116G0205 Durio zibethinus HOM05D004360 ORTHO05D005195 4.4e-43 178.7 119 75.6
DCAR_003506 Daucus carota HOM05D005117 ORTHO05D005956 1.1e-41 174.1 130 64.6
SMO143G0101 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 2.4e-41 172.9 157 54.1
BcaB01g01456 Brassica carinata HOM05D004360 ORTHO05D005195 9.2e-41 171.0 162 61.1
Dinv37400 Davidia involucrata HOM05D004360 ORTHO05D005195 2.1e-40 169.9 139 68.3
Mapoly0022s0158 Marchantia polymorpha HOM05D004360 ORTHO05D005195 7.8e-40 167.9 163 55.8
Ah.05g170480 Amaranthus hybridus HOM05D004360 ORTHO05D005195 2.3e-39 166.4 148 64.2
AagrBONN_evm.TU.Sc2ySwM_368.413 Anthoceros agrestis HOM05D004360 ORTHO05D005195 4.3e-38 162.2 145 56.6
SMO356G0006 Selaginella moellendorffii HOM05D004360 ORTHO05D005195 3.6e-37 159.1 163 50.9
SHI16862 Sapria himalayana HOM05D004360 ORTHO05D005195 1.4e-36 157.1 116 65.5
PSO210G7326 Papaver somniferum HOM05D004360 ORTHO05D005195 2.3e-36 156.4 146 59.6
Pp3c23_11640 Physcomitrium patens HOM05D004360 ORTHO05D005195 2.3e-36 156.4 162 53.1
Pp3c17_19860 Physcomitrium patens HOM05D004360 ORTHO05D005195 5.2e-36 155.2 140 53.6
SEGI_01847 Sequoiadendron giganteum HOM05D004360 ORTHO05D005195 1.2e-35 154.1 164 49.4
TPR.G4421 Trifolium pratense HOM05D004360 ORTHO05D001407 1.5e-35 153.7 134 60.4
CBR_g61487 Chara braunii HOM05D004360 ORTHO05D005195 1.3e-31 140.6 151 47.7
BcaB01g01455 Brassica carinata HOM05D004360 ORTHO05D005195 1.7e-31 140.2 86 80.2
unitig_578.g16114 Utricularia gibba HOM05D004360 ORTHO05D005195 2.8e-29 132.9 131 52.7
ECA246G3009 Erigeron canadensis HOM05D004360 ORTHO05D005195 3.0e-23 112.8 99 59.6
TAR375G0667 Trochodendron aralioides HOM05D004360 ORTHO05D005195 1.1e-22 110.9 125 51.2
FAN24G1049 Fragaria x ananassa HOM05D004360 ORTHO05D005195 5.3e-20 102.1 163 44.8
HanXRQChr09g0244511 Helianthus annuus HOM05D004360 ORTHO05D005195 8.4e-18 94.7 125 44.8
Pp3c14_12450 Physcomitrium patens HOM05D004360 ORTHO05D005195 1.2e-11 74.3 78 46.2
Dinv02982 Davidia involucrata HOM05D004360 ORTHO05D005195 3.4e-11 72.8 53 66.0
Dinv17160 Davidia involucrata HOM05D004360 ORTHO05D005195 3.4e-11 72.8 53 66.0
arahy.Tifrunner.gnm1.ann1.B7FYB2 Arachis hypogaea HOM05D001689 ORTHO05D001643 2.2e-10 70.1 44 72.7
Dinv04074 Davidia involucrata HOM05D004360 ORTHO05D005195 2.2e-10 70.1 54 63.0
Dinv08764 Davidia involucrata HOM05D004360 ORTHO05D005195 9.3e-09 64.7 46 67.4
TPR.G39583 Trifolium pratense HOM05D004360 ORTHO05D005195 3.5e-08 62.8 46 60.9


User provided reference genes

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