Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g044870.2 Solanum lycopersicum HOM05D006261 ORTHO05D007979 7.6e-256 886.7 462 100.0
Sopen11g020360 Solanum pennellii HOM05D006261 ORTHO05D007979 8.9e-249 863.2 462 97.4
PGSC0003DMG400022938 Solanum tuberosum HOM05D006261 ORTHO05D007979 3.2e-246 854.7 462 97.0
Nitab4.5_0000736g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 6.7e-204 714.1 465 82.6
Peaxi162Scf00684g00565 Petunia axillaris HOM05D006261 ORTHO05D007979 8.8e-188 660.6 414 83.6
Hma1.2p1_3161F.1_g333480 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 2.5e-166 589.3 496 63.9
TAR381G0774 Trochodendron aralioides HOM05D006261 ORTHO05D007979 1.2e-165 587.0 474 65.2
Nn5g30173 Nelumbo nucifera HOM05D006261 ORTHO05D007979 1.6e-165 586.6 472 63.6
Hma1.2p1_0584F.1_g183110 Hydrangea macrophylla HOM05D006261 ORTHO05D007979 2.8e-165 585.9 495 63.8
CsaV3_7G008780 Cucumis sativus L. HOM05D006261 ORTHO05D007979 4.7e-165 585.1 465 64.7
QL11p038259 Quercus lobata HOM05D006261 ORTHO05D007979 1.0e-164 583.9 472 65.9
TWI31G0850 Tripterygium wilfordii HOM05D006261 ORTHO05D007979 1.4e-164 583.6 468 63.9
GSVIVG01031798001 Vitis vinifera HOM05D006261 ORTHO05D007979 3.0e-164 582.4 467 64.9
Atru.chr5.2784_Atru.chr5.2785 Acer truncatum HOM05D006261 ORTHO05D007979 5.2e-164 581.6 467 66.0
Atru.chr5.2799_Atru.chr5.2800 Acer truncatum HOM05D006261 ORTHO05D007979 5.2e-164 581.6 467 66.0
Manes.15G143000 Manihot esculenta HOM05D006261 ORTHO05D007979 2.6e-163 579.3 471 66.2
Potri.004G144100 Populus trichocarpa HOM05D006261 ORTHO05D007979 5.7e-163 578.2 467 66.2
Cfa005432 Carpinus fangiana HOM05D006261 ORTHO05D007979 7.5e-163 577.8 466 65.2
CANSAT25G2015 Cannabis sativa HOM05D006261 ORTHO05D007979 2.9e-162 575.9 466 64.6
FAN27G0123 Fragaria x ananassa HOM05D006261 ORTHO05D007979 2.9e-162 575.9 464 66.6
Haze_01887 Corylus avellana HOM05D006261 ORTHO05D007979 3.7e-162 575.5 472 64.8
FAN20G2731 Fragaria x ananassa HOM05D006261 ORTHO05D007979 4.9e-162 575.1 464 66.4
FAN15G2665 Fragaria x ananassa HOM05D006261 ORTHO05D007979 6.4e-162 574.7 463 66.3
RcHm_v2.0_Chr6g0259011 Rosa chinensis HOM05D006261 ORTHO05D007979 3.2e-161 572.4 466 64.6
Cc02_g18510 Coffea canephora HOM05D006261 ORTHO05D007979 4.6e-160 568.5 469 64.6
Gorai.002G007100 Gossypium raimondii HOM05D006261 ORTHO05D007979 4.6e-160 568.5 467 64.7
Aqoxy6G01433 Aquilegia oxysepala HOM05D006261 ORTHO05D007979 5.9e-160 568.2 465 64.3
Lalb_Chr10g0095461 Lupinus albus HOM05D006261 ORTHO05D007979 7.8e-160 567.8 470 64.0
Ciclev10028211m.g Citrus clementina HOM05D006261 ORTHO05D007979 3.0e-159 565.8 466 65.5
CiPaw.05G054700 Carya illinoinensis HOM05D006261 ORTHO05D007979 8.6e-159 564.3 494 61.3
Potri.009G106100 Populus trichocarpa HOM05D006261 ORTHO05D007979 8.6e-159 564.3 466 66.1
CSS0049642 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 1.9e-158 563.1 480 63.3
Thecc.02G096300 Theobroma cacao HOM05D006261 ORTHO05D007979 7.3e-158 561.2 467 64.2
MD10G1089700 Malus domestica HOM05D006261 ORTHO05D007979 9.5e-158 560.8 468 63.9
SGA_v2.0_scaffold58G20611 Striga asiatica HOM05D006261 ORTHO05D007979 2.1e-157 559.7 464 64.0
vmacro19482 Vaccinium macrocarpon HOM05D006261 ORTHO05D007979 2.1e-157 559.7 487 61.8
Prupe.8G116700 Prunus persica HOM05D006261 ORTHO05D007979 2.8e-157 559.3 468 63.2
Rhsim05G0080700 Rhododendron simsii HOM05D006261 ORTHO05D007979 3.6e-157 558.9 482 62.4
MELO3C018434.2 Cucumis melo HOM05D006261 ORTHO05D007979 1.4e-156 557.0 465 62.8
CSS0020679 Camellia sinensis var. sinensis HOM05D006261 ORTHO05D007979 1.8e-156 556.6 475 63.2
COL.COLO4_11716 Corchorus olitorius HOM05D006261 ORTHO05D007979 3.1e-156 555.8 466 63.7
SalBow6G7179 Salvia bowleyana HOM05D006261 ORTHO05D007979 3.1e-156 555.8 464 63.6
Sabra04G0095700 Salix brachista HOM05D006261 ORTHO05D007979 8.9e-156 554.3 476 63.7
Gohir.A01G006000 Gossypium hirsutum HOM05D006261 ORTHO05D007979 2.0e-155 553.1 467 63.6
Ca_12470_v3 Cicer arietinum L. HOM05D006261 ORTHO05D007979 9.8e-155 550.8 468 62.0
MBI02_g21208_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 3.7e-154 548.9 485 60.6
Migut.B00311 Erythranthe guttata HOM05D006261 ORTHO05D007979 4.9e-154 548.5 464 62.7
PSO541G6069 Papaver somniferum HOM05D006261 ORTHO05D007979 6.4e-154 548.1 467 62.3
Psat6g096640 Pisum sativum HOM05D006261 ORTHO05D007979 6.4e-154 548.1 466 63.3
TPR.G11138 Trifolium pratense HOM05D006261 ORTHO05D007979 1.4e-153 547.0 460 62.4
Medtr1g034000 Medicago truncatula HOM05D006261 ORTHO05D007979 4.1e-153 545.4 466 62.2
Lsat_1_v5_gn_7_87821 Lactuca sativa HOM05D006261 ORTHO05D007979 9.2e-153 544.3 468 61.5
Glyma.07G178400 Glycine max HOM05D006261 ORTHO05D007979 2.7e-152 542.7 470 62.3
Hund06186 Selenicereus undatus HOM05D006261 ORTHO05D007979 7.8e-152 541.2 466 61.2
Lj2g0017302 Lotus japonicus HOM05D006261 ORTHO05D007979 1.7e-151 540.0 464 61.4
Eucgr.I01173 Eucalyptus grandis HOM05D006261 ORTHO05D007979 2.3e-151 539.7 467 61.9
Oeu007256.2 Olea europaea HOM05D006261 ORTHO05D007979 3.0e-151 539.3 642 50.5
Thhalv10025131m.g Eutrema salsugineum HOM05D006261 ORTHO05D007979 4.3e-150 535.4 462 61.5
HanXRQChr16g0508741 Helianthus annuus HOM05D006261 ORTHO05D007979 4.3e-150 535.4 463 60.7
Lj9C360T7 Lonicera japonica HOM05D006261 ORTHO05D007979 4.3e-150 535.4 484 60.3
Aa31LG2G16340 Aethionema arabicum HOM05D006261 ORTHO05D007979 9.5e-150 534.3 462 60.2
C01p04840 Brassica napus HOM05D006261 ORTHO05D007979 8.1e-149 531.2 462 61.0
Actinidia17850 Actinidia chinensis HOM05D006261 ORTHO05D007979 1.1e-148 530.8 442 64.0
BolC1t00468H Brassica oleracea HOM05D006261 ORTHO05D007979 4.0e-148 528.9 462 60.4
THA.LOC104807349 Tarenaya hassleriana HOM05D006261 ORTHO05D007979 6.8e-148 528.1 461 60.1
Sp7g31680 Schrenkiella parvula HOM05D006261 ORTHO05D007979 3.4e-147 525.8 462 60.0
A01p04450 Brassica napus HOM05D006261 ORTHO05D007979 4.4e-147 525.4 462 61.0
arahy.Tifrunner.gnm1.ann1.97F800 Arachis hypogaea HOM05D006261 ORTHO05D007979 5.8e-147 525.0 465 60.4
BraA01t00432Z Brassica rapa HOM05D006261 ORTHO05D007979 5.8e-147 525.0 462 61.0
CAN.G406.2 Capsicum annuum HOM05D006261 ORTHO05D007979 5.8e-147 525.0 328 85.4
arahy.Tifrunner.gnm1.ann1.WU5QTE Arachis hypogaea HOM05D006261 ORTHO05D007979 7.5e-147 524.6 465 60.4
VMungo1215G1075 Vigna mungo HOM05D006261 ORTHO05D007979 7.5e-147 524.6 462 60.6
ClCG02G005750 Citrullus lanatus HOM05D006261 ORTHO05D007979 3.7e-146 522.3 465 59.6
Carub.0007s0647 Capsella rubella HOM05D006261 ORTHO05D007979 8.3e-146 521.2 461 60.7
unitig_21.g20756 Utricularia gibba HOM05D006261 ORTHO05D007979 1.9e-145 520.0 466 59.0
AT4G33945 Arabidopsis thaliana HOM05D006261 ORTHO05D007979 2.4e-145 519.6 461 60.3
Phvul.003G012500 Phaseolus vulgaris HOM05D006261 ORTHO05D007979 1.6e-144 516.9 463 60.5
Sc08g0000100 Simmondsia chinensis HOM05D006261 ORTHO05D007979 6.0e-144 515.0 427 64.2
AL7G17470 Arabidopsis lyrata HOM05D006261 ORTHO05D007979 8.6e-143 511.1 461 59.2
EL10Ac9g21824 Beta vulgaris HOM05D006261 ORTHO05D007979 3.3e-142 509.2 482 55.2
AUR62011430 Chenopodium quinoa HOM05D006261 ORTHO05D007979 3.3e-142 509.2 474 57.6
ATR0097G005 Amborella trichopoda HOM05D006261 ORTHO05D007979 1.5e-139 500.4 478 56.5
AUR62016631 Chenopodium quinoa HOM05D006261 ORTHO05D007979 4.1e-137 492.3 482 56.6
FAN24G3480 Fragaria x ananassa HOM05D006261 ORTHO05D007979 6.0e-136 488.4 430 62.6
Gohir.D01G006100 Gossypium hirsutum HOM05D006261 ORTHO05D007979 8.6e-135 484.6 467 57.4
Nitab4.5_0002141g0010 Nicotiana tabacum HOM05D006261 ORTHO05D007979 9.6e-134 481.1 347 75.2
Duzib052G0221 Durio zibethinus HOM05D006261 ORTHO05D007979 4.7e-133 478.8 466 56.4
Zm00001eb255680 Zea mays HOM05D006261 ORTHO05D007979 5.8e-131 471.9 486 52.5
Sed0027300 Sechium edule HOM05D006261 ORTHO05D007979 2.9e-130 469.5 368 64.4
Ah.01g020100 Amaranthus hybridus HOM05D006261 ORTHO05D007979 7.1e-129 464.9 474 53.2
ECA236G1018 Erigeron canadensis HOM05D006261 ORTHO05D001911 7.1e-129 464.9 380 62.6
Os02g0761200 Oryza sativa ssp. japonica HOM05D006261 ORTHO05D007979 3.1e-124 449.5 459 52.7
HPP92_004238 Vanilla planifolia HOM05D006261 ORTHO05D007979 2.6e-123 446.4 467 51.6
HPP92_004260 Vanilla planifolia HOM05D006261 ORTHO05D007979 4.5e-123 445.7 467 51.6
MSTRG.16765 Avicennia marina HOM05D006261 ORTHO05D007979 4.9e-122 442.2 464 53.9
Cpa.g.sc62.43 Carica papaya HOM05D006261 ORTHO05D007979 7.1e-121 438.3 317 70.7
Dinv23589 Davidia involucrata HOM05D006261 ORTHO05D007979 1.8e-116 423.7 331 67.1
FvH4_2g06790 Fragaria vesca HOM05D006261 ORTHO05D007979 1.8e-116 423.7 363 63.4
SEGI_22642 Sequoiadendron giganteum HOM05D006261 ORTHO05D007979 1.8e-116 423.7 477 50.1
PGR142G4090 Punica granatum HOM05D006261 ORTHO05D007979 1.2e-112 411.0 339 63.4
CDE10G1007 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 2.0e-107 393.7 514 47.9
DCAR_000243 Daucus carota HOM05D006261 ORTHO05D007979 3.0e-103 379.8 321 64.8
SHI05382 Sapria himalayana HOM05D006261 ORTHO05D007979 5.9e-91 339.0 359 52.6
CDE10G0955 Ceratophyllum demersum HOM05D006261 ORTHO05D007979 1.8e-84 317.4 348 52.3
Haze_01888 Corylus avellana HOM05D006261 ORTHO05D007979 1.2e-83 314.7 305 59.3
BcaB03g11867 Brassica carinata HOM05D006261 ORTHO05D007979 2.0e-83 313.9 265 63.4
Mapoly0088s0010 Marchantia polymorpha HOM05D006261 ORTHO05D007979 7.7e-83 312.0 490 39.0
CARHR242070 Cardamine hirsuta HOM05D006261 ORTHO05D007979 5.2e-79 299.3 219 68.5
SMO116G0201 Selaginella moellendorffii HOM05D006261 ORTHO05D007979 2.5e-73 280.4 428 40.0
RcHm_v2.0_Chr6g0252951 Rosa chinensis HOM05D006261 ORTHO05D007979 1.2e-67 261.5 342 46.8
Pp3c15_12310 Physcomitrium patens HOM05D006261 ORTHO05D007979 1.7e-58 231.1 492 32.1
MCO13G090 Micromonas commoda HOM05D006261 ORTHO05D007979 2.3e-47 194.1 499 32.1
MBI02_g32602_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 5.0e-42 176.4 160 56.9
CAN.G406.3 Capsicum annuum HOM05D006261 ORTHO05D007979 1.2e-40 171.8 143 67.8
Glyma.20G009900 Glycine max HOM05D006261 ORTHO05D007979 6.2e-40 169.5 191 52.4
Cre07.g343850 Chlamydomonas reinhardtii HOM05D006261 ORTHO05D007979 3.3e-33 147.1 502 27.1
CAN.G93.11 Capsicum annuum HOM05D006261 ORTHO05D007979 9.9e-30 135.6 102 72.5
MBI15_g16863_MAGBIO Magnolia biondii HOM05D006261 ORTHO05D007979 2.8e-24 117.5 126 51.6
CBR_g53672 Chara braunii HOM05D000019 ORTHO05D000353 6.2e-24 116.3 437 27.5
PRCOL_00000949 Prasinoderma coloniale HOM05D006261 ORTHO05D007979 1.2e-22 112.1 401 24.4
DCAR_022063 Daucus carota HOM05D006261 ORTHO05D007979 3.4e-22 110.5 84 66.7
BcaB01g01387 Brassica carinata HOM05D006261 ORTHO05D007979 1.9e-20 104.8 81 61.7
BcaB06g27277 Brassica carinata HOM05D006261 ORTHO05D007979 2.4e-20 104.4 82 64.6
Dinv42128 Davidia involucrata HOM05D006261 ORTHO05D007979 9.2e-20 102.4 375 29.9
BcaB01g01385 Brassica carinata HOM05D006261 ORTHO05D007979 1.6e-19 101.7 81 61.7
SHI05383 Sapria himalayana HOM05D006261 ORTHO05D007979 3.3e-17 94.0 100 51.0
Lj1g0009361 Lotus japonicus HOM05D041574 ORTHO05D236155 3.0e-10 70.9 72 48.6
Lj5g0023620 Lotus japonicus HOM05D041574 ORTHO05D236101 7.3e-09 66.2 72 45.8


User provided reference genes

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