Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g044680.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 3.0e-79 298.5 159 100.0
Solyc00g500043.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.5e-67 258.1 158 86.7
Solyc00g500088.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 4.5e-67 258.1 158 86.7
Solyc00g500126.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.5e-67 258.1 158 86.7
Solyc00g500278.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 4.5e-67 258.1 158 86.7
Solyc00g500324.1 Solanum lycopersicum HOM05D001070 ORTHO05D010233 4.5e-67 258.1 158 86.7
Solyc00g500084.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 7.7e-67 257.3 156 87.8
Solyc00g500196.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 7.7e-67 257.3 156 87.8
PGSC0003DMG400004187 Solanum tuberosum HOM05D001070 ORTHO05D002096 3.2e-65 251.9 156 86.5
Nitab4.5_0023521g0010 Nicotiana tabacum HOM05D000388 ORTHO05D000473 1.1e-60 236.9 156 82.1
Solyc00g500040.1 Solanum lycopersicum HOM05D001070 ORTHO05D013014 1.2e-59 233.4 139 87.8
Nitab4.5_0012234g0030 Nicotiana tabacum HOM05D001070 ORTHO05D002096 8.9e-55 217.2 151 78.8
Solyc11g021310.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.3e-50 203.4 158 71.5
Nitab4.5_0002628g0020 Nicotiana tabacum HOM05D001070 ORTHO05D002096 7.3e-49 197.6 132 80.3
Nitab4.5_0004841g0060 Nicotiana tabacum HOM05D001070 ORTHO05D002096 9.8e-46 187.2 151 72.2
Peaxi162Scf00139g00015 Petunia axillaris HOM05D001070 ORTHO05D002096 8.6e-42 174.1 122 77.9
Solyc00g500190.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.8e-39 166.4 102 85.3
CAN.G965.9 Capsicum annuum HOM05D001070 ORTHO05D002096 2.6e-38 162.5 151 66.2
Solyc12g036550.3 Solanum lycopersicum HOM05D001070 ORTHO05D002096 5.8e-38 161.4 105 83.8
Peaxi162Scf00080g00516 Petunia axillaris HOM05D001070 ORTHO05D002096 7.5e-38 161.0 157 62.4
Peaxi162Scf00130g00416 Petunia axillaris HOM05D001070 ORTHO05D002096 8.3e-37 157.5 100 82.0
Peaxi162Scf00536g00047 Petunia axillaris HOM05D001070 ORTHO05D002096 8.3e-37 157.5 100 82.0
Peaxi162Scf00338g00618 Petunia axillaris HOM05D001070 ORTHO05D002096 3.2e-36 155.6 112 75.0
Solyc02g011860.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.5e-33 146.7 110 74.5
CAN.G1045.8 Capsicum annuum HOM05D001070 ORTHO05D002096 2.3e-31 139.4 172 54.7
Oeu022558.1 Olea europaea HOM05D001070 ORTHO05D002096 3.1e-31 139.0 155 60.0
Oeu010690.1 Olea europaea HOM05D001070 ORTHO05D002096 1.5e-30 136.7 153 58.8
DCAR_019125 Daucus carota HOM05D001070 ORTHO05D002096 4.1e-28 128.6 125 67.2
DCAR_032544 Daucus carota HOM05D001070 ORTHO05D002096 4.1e-28 128.6 125 67.2
CAN.G134.9 Capsicum annuum HOM05D001070 ORTHO05D002096 7.1e-28 127.9 181 50.3
Solyc04g045540.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 2.7e-27 125.9 81 85.2
CAN.G100.34 Capsicum annuum HOM05D001200 ORTHO05D002731 3.5e-27 125.6 121 62.8
SalBow1G3373 Salvia bowleyana HOM05D001070 ORTHO05D002096 1.1e-25 120.6 155 56.1
SalBow1G6555 Salvia bowleyana HOM05D001070 ORTHO05D002096 1.1e-25 120.6 155 56.1
Solyc10g062235.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.1e-25 120.6 78 85.9
CAN.G262.4 Capsicum annuum HOM05D007952 ORTHO05D009823 5.6e-25 118.2 136 55.9
Ciclev10010879m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.4e-22 109.0 146 55.5
Ciclev10013978m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.4e-22 109.0 146 55.5
Ciclev10013980m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.4e-22 109.0 146 55.5
Ciclev10013987m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.4e-22 109.0 146 55.5
Ciclev10013999m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.4e-22 109.0 146 55.5
Ciclev10014002m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.4e-22 109.0 146 55.5
Ciclev10030452m.g Citrus clementina HOM05D001070 ORTHO05D002096 3.4e-22 109.0 146 55.5
Ciclev10027640m.g Citrus clementina HOM05D001070 ORTHO05D002096 4.4e-22 108.6 158 53.2
Oeu023335.1 Olea europaea HOM05D001070 ORTHO05D002096 1.1e-20 104.0 122 58.2
Potri.011G073900 Populus trichocarpa HOM05D001070 ORTHO05D002096 1.6e-19 100.1 127 52.8
Potri.002G008176 Populus trichocarpa HOM05D001070 ORTHO05D002096 4.6e-19 98.6 90 71.1
CiPaw.01G098400 Carya illinoinensis HOM05D001070 ORTHO05D002096 1.0e-18 97.4 155 47.1
Gohir.A03G072900 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.0e-18 97.4 154 51.9
Gohir.D03G074712 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.3e-18 96.3 106 60.4
Nitab4.5_0000172g2260 Nicotiana tabacum HOM05D001070 ORTHO05D002096 2.3e-18 96.3 73 68.5
Ciclev10014005m.g Citrus clementina HOM05D001070 ORTHO05D002096 8.7e-18 94.4 94 66.0
Ciclev10027654m.g Citrus clementina HOM05D001070 ORTHO05D002096 8.7e-18 94.4 94 66.0
PGR111G0057 Punica granatum HOM05D001070 ORTHO05D002096 8.7e-18 94.4 146 50.0
Solyc08g043160.1 Solanum lycopersicum HOM05D001070 ORTHO05D002096 1.1e-17 94.0 66 83.3
TAR633G1337 Trochodendron aralioides HOM05D001070 ORTHO05D002096 1.5e-17 93.6 154 48.7
CAN.G1185.5 Capsicum annuum HOM05D001070 ORTHO05D010055 2.8e-16 89.4 306 32.0
Gohir.A04G057652 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.8e-16 89.4 100 63.0
Sabra06G0005100 Salix brachista HOM05D001711 ORTHO05D002847 6.2e-16 88.2 78 71.8
CARHR282400 Cardamine hirsuta HOM05D001070 ORTHO05D002096 1.8e-15 86.7 108 55.6
Gohir.1Z049492 Gossypium hirsutum HOM05D001070 ORTHO05D002096 6.9e-15 84.7 102 60.8
AL7G50370 Arabidopsis lyrata HOM05D001070 ORTHO05D002096 9.0e-15 84.3 149 46.3
Nn4g25224 Nelumbo nucifera HOM05D001070 ORTHO05D005132 3.4e-14 82.4 63 76.2
ClCG11G009270 Citrullus lanatus HOM05D001070 ORTHO05D002096 1.7e-13 80.1 115 50.4
C09p25530 Brassica napus HOM05D001070 ORTHO05D002096 6.4e-13 78.2 144 44.4
BcaC04g20701 Brassica carinata HOM05D001070 ORTHO05D002096 8.4e-13 77.8 158 41.8
BolSC46t60964H Brassica oleracea HOM05D001070 ORTHO05D002096 1.9e-12 76.6 148 41.9
BolSC29t60500H Brassica oleracea HOM05D001070 ORTHO05D002096 3.2e-12 75.9 157 40.8
BolSC29t60623H Brassica oleracea HOM05D001070 ORTHO05D002096 3.2e-12 75.9 157 40.8
BolSC35t60710H Brassica oleracea HOM05D001070 ORTHO05D002096 3.2e-12 75.9 157 40.8
Nitab4.5_0004137g0090 Nicotiana tabacum HOM05D001070 ORTHO05D002096 4.2e-12 75.5 102 47.1
FAN13G2309 Fragaria x ananassa HOM05D001070 ORTHO05D002096 9.3e-12 74.3 79 59.5
Sc25g0002030 Simmondsia chinensis HOM05D001070 ORTHO05D002096 1.2e-11 73.9 137 46.0
Aqoxy4G02031 Aquilegia oxysepala HOM05D001070 ORTHO05D002096 4.6e-11 72.0 154 44.8
EL10Ac5g11665 Beta vulgaris HOM05D001070 ORTHO05D002096 1.0e-10 70.9 156 41.0
EL10Ac7g17376 Beta vulgaris HOM05D001070 ORTHO05D002096 1.0e-10 70.9 156 41.0
Gohir.1Z050666 Gossypium hirsutum HOM05D001070 ORTHO05D002096 1.0e-10 70.9 57 75.4
ScUNg0000260 Simmondsia chinensis HOM05D001070 ORTHO05D002096 1.0e-10 70.9 118 48.3
Sed0002593 Sechium edule HOM05D001070 ORTHO05D002096 1.7e-10 70.1 132 45.5
Sed0021842 Sechium edule HOM05D001070 ORTHO05D002096 1.7e-10 70.1 124 47.6
Sed0025207 Sechium edule HOM05D001070 ORTHO05D002096 1.7e-10 70.1 132 45.5
PSO210G1984 Papaver somniferum HOM05D001070 ORTHO05D002096 3.9e-10 68.9 81 63.0
PSO541G0682 Papaver somniferum HOM05D001070 ORTHO05D002096 3.9e-10 68.9 81 63.0
PSO548G0067 Papaver somniferum HOM05D001070 ORTHO05D002096 3.9e-10 68.9 81 63.0
Migut.D01245 Erythranthe guttata HOM05D001070 ORTHO05D002096 8.7e-10 67.8 81 55.6
Peaxi162Scf00080g00524 Petunia axillaris HOM05D001070 ORTHO05D002096 8.7e-10 67.8 112 42.0
TAR624G0722 Trochodendron aralioides HOM05D001070 ORTHO05D002096 1.9e-09 66.6 136 43.4
TAR626G0349 Trochodendron aralioides HOM05D001070 ORTHO05D002096 1.9e-09 66.6 139 41.7
Atru.chr8.922 Acer truncatum HOM05D001070 ORTHO05D002096 2.5e-09 66.2 95 51.6
BraSC138t45540Z Brassica rapa HOM05D001070 ORTHO05D002096 4.3e-09 65.5 81 53.1
Oeu012767.1 Olea europaea HOM05D001070 ORTHO05D002096 5.6e-09 65.1 73 60.3
BraSC138t45529Z Brassica rapa HOM05D001070 ORTHO05D002096 7.3e-09 64.7 155 38.7
Peaxi162Scf00629g00021 Petunia axillaris HOM05D001032 ORTHO05D000907 1.3e-08 63.9 102 44.1
RcHm_v2.0_Chr4g0392791 Rosa chinensis HOM05D001070 ORTHO05D002096 1.3e-08 63.9 79 58.2
BolSC35t60698H Brassica oleracea HOM05D001070 ORTHO05D002096 2.8e-08 62.8 81 53.1
BolSC44t60817H Brassica oleracea HOM05D001070 ORTHO05D002096 2.8e-08 62.8 81 53.1
BolSC45t60915H Brassica oleracea HOM05D001070 ORTHO05D002096 2.8e-08 62.8 81 53.1
Gohir.A10G117450 Gossypium hirsutum HOM05D001070 ORTHO05D002096 2.8e-08 62.8 48 72.9
CAN.G1298.17 Capsicum annuum HOM05D001070 ORTHO05D004271 4.8e-08 62.0 64 62.5
Nn064s42217 Nelumbo nucifera HOM05D001070 ORTHO05D002096 4.8e-08 62.0 98 49.0
Nn212s45207 Nelumbo nucifera HOM05D001070 ORTHO05D002096 4.8e-08 62.0 98 49.0
Gohir.A09G046100 Gossypium hirsutum HOM05D001070 ORTHO05D002096 6.2e-08 61.6 100 50.0
BolSC44t60828H Brassica oleracea HOM05D001070 ORTHO05D002096 1.1e-07 60.8 72 54.2
Sed0020782 Sechium edule HOM05D001070 ORTHO05D002096 1.1e-07 60.8 62 62.9
Nitab4.5_0003632g0010 Nicotiana tabacum HOM05D008537 ORTHO05D010652 1.8e-07 60.1 36 75.0
Nitab4.5_0004137g0050 Nicotiana tabacum HOM05D001070 ORTHO05D002096 9.0e-07 57.8 32 93.8
EL10Ac4g08269 Beta vulgaris HOM05D001070 ORTHO05D002096 1.5e-06 57.0 156 37.8
PSO541G2875 Papaver somniferum HOM05D001070 ORTHO05D002096 2.0e-06 56.6 63 66.7
ScUNg0001540 Simmondsia chinensis HOM05D001070 ORTHO05D002096 2.0e-06 56.6 85 51.8
Sc04g0003130 Simmondsia chinensis HOM05D001070 ORTHO05D002096 2.6e-06 56.2 98 46.9
Nn031s41609 Nelumbo nucifera HOM05D001070 ORTHO05D002096 5.8e-06 55.1 63 55.6
A04p09360 Brassica napus HOM05D001070 ORTHO05D002096 9.9e-06 54.3 30 93.3
BolSC28t60312H Brassica oleracea HOM05D001070 ORTHO05D002096 9.9e-06 54.3 30 93.3
BolSC28t60368H Brassica oleracea HOM05D001070 ORTHO05D002096 9.9e-06 54.3 30 93.3
BraSC159t45727Z Brassica rapa HOM05D001070 ORTHO05D002096 9.9e-06 54.3 30 93.3
BraSC48t46237Z Brassica rapa HOM05D001070 ORTHO05D002096 9.9e-06 54.3 30 93.3
BraSC54t46367Z Brassica rapa HOM05D001070 ORTHO05D002096 9.9e-06 54.3 30 93.3


User provided reference genes

Program Settings