Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g044645.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 2.8e-91 338.6 168 100.0
Solyc00g500195.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 3.6e-54 215.3 182 68.1
CAN.G134.7 Capsicum annuum HOM05D001750 ORTHO05D001825 4.6e-54 214.9 196 63.3
CAN.G1431.3 Capsicum annuum HOM05D001750 ORTHO05D001825 4.6e-54 214.9 196 63.3
CAN.G1526.5 Capsicum annuum HOM05D001750 ORTHO05D001825 4.6e-54 214.9 196 63.3
CAN.G413.7 Capsicum annuum HOM05D001750 ORTHO05D001825 4.6e-54 214.9 196 63.3
PGSC0003DMG400029008 Solanum tuberosum HOM05D001750 ORTHO05D001825 7.9e-54 214.2 182 67.6
CAN.G1045.16 Capsicum annuum HOM05D001750 ORTHO05D001825 3.3e-52 208.8 182 64.8
BolSC49t61137H Brassica oleracea HOM05D001750 ORTHO05D001825 6.9e-50 201.1 159 71.7
Lj2P1238T72 Lonicera japonica HOM05D001750 ORTHO05D001825 2.2e-48 196.1 182 62.6
EL10As15g24136 Beta vulgaris HOM05D001750 ORTHO05D001825 5.0e-48 194.9 150 70.7
FvH4_c3g00021 Fragaria vesca HOM05D001750 ORTHO05D001825 2.5e-47 192.6 179 62.6
Gohir.A04G039195 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.5e-47 192.6 181 61.9
Gohir.A12G229700 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.5e-47 192.6 181 61.9
DCAR_032533 Daucus carota HOM05D001750 ORTHO05D001825 3.2e-47 192.2 182 59.3
HanXRQChr00c0289g0573101 Helianthus annuus HOM05D001750 ORTHO05D001825 5.5e-47 191.4 158 66.5
Gohir.A02G134105 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.2e-46 190.3 181 61.3
BolC9t56810H Brassica oleracea HOM05D001750 ORTHO05D001825 1.6e-46 189.9 154 66.9
Gohir.1Z049581 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.6e-46 189.9 181 61.3
Potri.001G342933 Populus trichocarpa HOM05D001750 ORTHO05D001825 1.6e-46 189.9 181 61.9
PGR111G0046 Punica granatum HOM05D001750 ORTHO05D001825 2.1e-46 189.5 181 61.3
Gohir.1Z049402 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.7e-46 189.1 181 60.2
Nn064s42216 Nelumbo nucifera HOM05D001750 ORTHO05D001825 3.6e-46 188.7 181 62.4
HanXRQChr05g0152401 Helianthus annuus HOM05D001750 ORTHO05D001825 4.7e-46 188.3 184 59.2
AL7G50360 Arabidopsis lyrata HOM05D001750 ORTHO05D001825 6.1e-46 188.0 180 61.7
ATCG01010 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 7.9e-46 187.6 187 61.0
BolSC37t60789H Brassica oleracea HOM05D001750 ORTHO05D001825 7.9e-46 187.6 183 62.3
BolSC44t60818H Brassica oleracea HOM05D001750 ORTHO05D001825 7.9e-46 187.6 183 62.3
BolSC45t60914H Brassica oleracea HOM05D001750 ORTHO05D001825 7.9e-46 187.6 183 62.3
BraSC103t45424Z Brassica rapa HOM05D001750 ORTHO05D001825 7.9e-46 187.6 183 62.3
BraSC143t45665Z Brassica rapa HOM05D001750 ORTHO05D001825 7.9e-46 187.6 183 62.3
BraSC25t45905Z Brassica rapa HOM05D001750 ORTHO05D001825 7.9e-46 187.6 183 62.3
BraSC59t46546Z Brassica rapa HOM05D001750 ORTHO05D001825 7.9e-46 187.6 183 62.3
HanXRQChr02g0059681 Helianthus annuus HOM05D001750 ORTHO05D001825 1.4e-45 186.8 182 59.3
HanXRQCPg0580391 Helianthus annuus HOM05D001750 ORTHO05D001825 1.4e-45 186.8 182 59.3
HanXRQChr17g0557801 Helianthus annuus HOM05D001750 ORTHO05D001825 3.9e-45 185.3 185 57.8
HanXRQChr06g0182971 Helianthus annuus HOM05D001750 ORTHO05D001825 9.7e-44 180.6 182 58.2
Gohir.A07G167090 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.2e-43 179.5 169 62.1
Medtr4g051300 Medicago truncatula HOM05D001750 ORTHO05D001825 2.2e-43 179.5 181 57.5
Medtr7g021740 Medicago truncatula HOM05D001750 ORTHO05D001825 2.2e-43 179.5 181 57.5
Nn212s45208 Nelumbo nucifera HOM05D001750 ORTHO05D001825 2.2e-43 179.5 171 62.0
LjContig00318g0010147 Lotus japonicus HOM05D001750 ORTHO05D001825 2.8e-43 179.1 178 58.4
LjContig00319g0009462 Lotus japonicus HOM05D001750 ORTHO05D001825 2.8e-43 179.1 178 58.4
arahy.Tifrunner.gnm1.ann1.5P7K6N Arachis hypogaea HOM05D001750 ORTHO05D001825 3.7e-43 178.7 178 58.4
Sed0000095 Sechium edule HOM05D001750 ORTHO05D001825 4.8e-43 178.3 171 61.4
arahy.Tifrunner.gnm1.ann1.B6WU7N Arachis hypogaea HOM05D001750 ORTHO05D001825 8.2e-43 177.6 178 57.9
Gohir.D09G044501 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.4e-42 176.8 183 59.0
Medtr0002s0200 Medicago truncatula HOM05D001750 ORTHO05D001825 5.3e-42 174.9 181 56.9
EL10As28g24255 Beta vulgaris HOM05D001750 ORTHO05D001825 9.1e-42 174.1 192 54.7
Lalb_Chr03g0039401 Lupinus albus HOM05D001750 ORTHO05D001825 2.6e-41 172.6 181 55.8
PSO548G0117 Papaver somniferum HOM05D001750 ORTHO05D001825 2.6e-41 172.6 181 56.4
Gorai.006G066100 Gossypium raimondii HOM05D001750 ORTHO05D001825 5.9e-41 171.4 183 58.5
Psat5g142840 Pisum sativum HOM05D001750 ORTHO05D001825 7.7e-41 171.0 178 56.7
SEGI_32159 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 2.5e-39 166.0 167 59.9
SEGI_35420 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 2.5e-39 166.0 167 59.9
Lalb_Chr16g0388571 Lupinus albus HOM05D001750 ORTHO05D001825 2.1e-38 162.9 111 74.8
HanXRQChr08g0212841 Helianthus annuus HOM05D001750 ORTHO05D001825 1.8e-37 159.8 156 56.4
Psat0ss8367g0120 Pisum sativum HOM05D001750 ORTHO05D001825 3.0e-37 159.1 159 58.5
HanXRQChr01g0020101 Helianthus annuus HOM05D001750 ORTHO05D001825 4.0e-37 158.7 184 53.8
Nn031s41610 Nelumbo nucifera HOM05D001750 ORTHO05D001825 2.6e-36 156.0 162 59.9
unitig_736.g22737 Utricularia gibba HOM05D001750 ORTHO05D001825 2.8e-35 152.5 135 63.0
HanXRQChr09g0258551 Helianthus annuus HOM05D001750 ORTHO05D001825 7.0e-34 147.9 168 53.6
SEGI_32489 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 2.2e-32 142.9 133 60.9
Solyc02g011710.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.9e-31 139.8 131 61.1
Ciclev10013979m.g Citrus clementina HOM05D001750 ORTHO05D001825 2.5e-31 139.4 148 56.1
Ciclev10013982m.g Citrus clementina HOM05D001750 ORTHO05D001825 2.5e-31 139.4 148 56.1
Ciclev10013988m.g Citrus clementina HOM05D001750 ORTHO05D001825 2.5e-31 139.4 148 56.1
Ciclev10013998m.g Citrus clementina HOM05D001750 ORTHO05D001825 2.5e-31 139.4 148 56.1
Ciclev10014001m.g Citrus clementina HOM05D001750 ORTHO05D001825 2.5e-31 139.4 148 56.1
Ciclev10018421m.g Citrus clementina HOM05D001750 ORTHO05D001825 2.5e-31 139.4 148 56.1
Ciclev10030453m.g Citrus clementina HOM05D001750 ORTHO05D001825 2.5e-31 139.4 148 56.1
Gorai.010G151000 Gossypium raimondii HOM05D001750 ORTHO05D001825 2.7e-30 136.0 122 60.7
GSVIVG01004971001 Vitis vinifera HOM05D001750 ORTHO05D001825 1.0e-29 134.0 141 55.3
SabraPtG0005600 Salix brachista HOM05D000533 ORTHO05D006151 1.4e-29 133.7 93 79.6
Glyma.11G081100 Glycine max HOM05D001750 ORTHO05D001825 2.3e-29 132.9 131 55.0
EL10Ac1g00371 Beta vulgaris HOM05D001750 ORTHO05D001825 6.8e-29 131.3 128 56.2
PGSC0003DMG400010958 Solanum tuberosum HOM05D001750 ORTHO05D001825 2.2e-27 126.3 92 70.7
Nitab4.5_0007400g0130 Nicotiana tabacum HOM05D001750 ORTHO05D001825 1.4e-26 123.6 77 83.1
SEGI_16404 Sequoiadendron giganteum HOM05D001387 ORTHO05D001250 1.6e-25 120.2 122 59.8
Manes.18G138200 Manihot esculenta HOM05D001750 ORTHO05D001825 3.8e-24 115.5 84 67.9
Oeu016296.1 Olea europaea HOM05D001750 ORTHO05D001825 5.0e-24 115.2 99 62.6
Lsat_1_v5_gn_5_52761 Lactuca sativa HOM05D001750 ORTHO05D001825 8.5e-24 114.4 128 54.7
SalBow1G5472 Salvia bowleyana HOM05D001750 ORTHO05D001825 9.4e-23 110.9 108 61.1
BolSC46t60963H Brassica oleracea HOM05D001750 ORTHO05D001825 1.6e-22 110.2 121 59.5
Oeu012766.1 Olea europaea HOM05D001750 ORTHO05D001825 2.3e-21 106.3 122 51.6
Solyc12g033070.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 3.0e-21 105.9 86 64.0
BolSC43t60806H Brassica oleracea HOM05D001750 ORTHO05D001825 7.5e-20 101.3 70 75.7
SEGI_05928 Sequoiadendron giganteum HOM05D001750 ORTHO05D001825 7.5e-20 101.3 104 58.7
CARHR212490 Cardamine hirsuta HOM05D001750 ORTHO05D001825 1.7e-19 100.1 101 56.4
Psat0s6638g0080 Pisum sativum HOM05D001750 ORTHO05D001825 6.3e-19 98.2 107 55.1
Psat0s8829g0080 Pisum sativum HOM05D001750 ORTHO05D001825 6.3e-19 98.2 107 55.1
Psat4g065280 Pisum sativum HOM05D001750 ORTHO05D001825 6.3e-19 98.2 107 55.1
EL10As4g23402 Beta vulgaris HOM05D001750 ORTHO05D001825 1.8e-18 96.7 64 82.8
BraSC138t45539Z Brassica rapa HOM05D001750 ORTHO05D001825 1.8e-18 96.7 101 59.4
SMO086G0048 Selaginella moellendorffii HOM05D001750 ORTHO05D001825 9.2e-18 94.4 171 40.9
unitig_91.g26524 Utricularia gibba HOM05D001750 ORTHO05D001825 2.7e-17 92.8 95 58.9
arahy.Tifrunner.gnm1.ann1.4DVC71 Arachis hypogaea HOM05D001750 ORTHO05D001825 2.5e-15 86.3 78 59.0
Nn1g09725 Nelumbo nucifera HOM05D001750 ORTHO05D001825 4.3e-15 85.5 88 58.0
Solyc05g013100.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.6e-14 83.6 107 53.3
Migut.D01382 Erythranthe guttata HOM05D001750 ORTHO05D001825 6.1e-14 81.6 142 44.4
Mapoly0092s0002 Marchantia polymorpha HOM05D001750 ORTHO05D001825 8.0e-14 81.3 101 47.5
Gohir.D06G183633 Gossypium hirsutum HOM05D001750 ORTHO05D001825 1.8e-13 80.1 90 56.7
arahy.Tifrunner.gnm1.ann1.GEK8SS Arachis hypogaea HOM05D001750 ORTHO05D001825 2.3e-13 79.7 88 56.8
Peaxi162Scf00030g02118 Petunia axillaris HOM05D001200 ORTHO05D002731 2.6e-12 76.3 71 67.6
Sed0003522 Sechium edule HOM05D000963 ORTHO05D004715 9.8e-12 74.3 87 55.2
BolSC35t60696H Brassica oleracea HOM05D001750 ORTHO05D001825 1.3e-11 73.9 64 64.1
Gohir.D06G115850 Gossypium hirsutum HOM05D001750 ORTHO05D001825 2.2e-11 73.2 106 42.5
HanXRQChr11g0323711 Helianthus annuus HOM05D001750 ORTHO05D001825 2.2e-11 73.2 87 54.0
Oeu058353.1 Olea europaea HOM05D001750 ORTHO05D001825 2.9e-11 72.8 73 53.4
Solyc01g017100.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 4.9e-11 72.0 87 51.7
Gohir.A04G039180 Gossypium hirsutum HOM05D001750 ORTHO05D001825 4.1e-10 68.9 64 62.5
Hma1.2p1_0472F.1_g159730 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 1.2e-09 67.4 62 62.9
Oeu010691.1 Olea europaea HOM05D001750 ORTHO05D001825 4.6e-09 65.5 64 60.9
RcHm_v2.0_CPg0502851 Rosa chinensis HOM05D001750 ORTHO05D001825 5.9e-09 65.1 46 78.3
Gorai.010G133500 Gossypium raimondii HOM05D001750 ORTHO05D001825 1.0e-08 64.3 106 40.6
Oeu058634.1 Olea europaea HOM05D001750 ORTHO05D001825 1.7e-08 63.5 73 52.1
Gorai.005G127100 Gossypium raimondii HOM05D001750 ORTHO05D001825 5.0e-08 62.0 75 52.0
Solyc12g033000.1 Solanum lycopersicum HOM05D000388 ORTHO05D000473 5.0e-08 62.0 55 60.0
Medtr4g006150 Medicago truncatula HOM05D001750 ORTHO05D001825 1.1e-07 60.8 48 68.8
Zm00001eb384430 Zea mays HOM05D001750 ORTHO05D001825 3.3e-07 59.3 168 30.4
Zm00001eb384490 Zea mays HOM05D001750 ORTHO05D001825 3.3e-07 59.3 168 30.4
Zm00001eb438010 Zea mays HOM05D001750 ORTHO05D001825 3.3e-07 59.3 168 30.4
Zm00001eb439010 Zea mays HOM05D001750 ORTHO05D001825 3.3e-07 59.3 168 30.4
Zm00001eb440820 Zea mays HOM05D001750 ORTHO05D001825 3.3e-07 59.3 168 30.4
Zm00001eb442540 Zea mays HOM05D001750 ORTHO05D001825 3.3e-07 59.3 168 30.4
Gorai.005G011700 Gossypium raimondii HOM05D001750 ORTHO05D001825 4.3e-07 58.9 73 50.7
Lsat_1_v5_gn_5_80201 Lactuca sativa HOM05D000964 ORTHO05D003870 4.3e-07 58.9 57 57.9
Ah.10g027940 Amaranthus hybridus HOM05D001750 ORTHO05D001825 5.6e-07 58.5 168 30.4
Ah.10g028650 Amaranthus hybridus HOM05D001750 ORTHO05D001825 5.6e-07 58.5 168 30.4
AUR62042331 Chenopodium quinoa HOM05D001750 ORTHO05D001825 5.6e-07 58.5 168 30.4
ECA039G0010 Erigeron canadensis HOM05D001750 ORTHO05D001825 5.6e-07 58.5 168 30.4
Migut.L00571 Erythranthe guttata HOM05D001750 ORTHO05D001825 5.6e-07 58.5 91 42.9
ATMG00513 Arabidopsis thaliana HOM05D001750 ORTHO05D001825 7.3e-07 58.2 168 30.4
BolSC28t60406H Brassica oleracea HOM05D001750 ORTHO05D001825 7.3e-07 58.2 168 30.4
BolSC28t60420H Brassica oleracea HOM05D001750 ORTHO05D001825 7.3e-07 58.2 168 30.4
BraSC77t46633Z Brassica rapa HOM05D001750 ORTHO05D001825 7.3e-07 58.2 168 30.4
SHI48909 Sapria himalayana HOM05D001750 ORTHO05D001825 7.3e-07 58.2 168 29.8
Sp3g25940 Schrenkiella parvula HOM05D001750 ORTHO05D001825 7.3e-07 58.2 168 30.4
Gorai.001G163400 Gossypium raimondii HOM05D001750 ORTHO05D001825 9.5e-07 57.8 168 30.4
Hund27692 Selenicereus undatus HOM05D001750 ORTHO05D001825 9.5e-07 57.8 168 30.4
Hund29041 Selenicereus undatus HOM05D001750 ORTHO05D001825 9.5e-07 57.8 168 30.4
Hund31001 Selenicereus undatus HOM05D001750 ORTHO05D001825 9.5e-07 57.8 168 30.4
Zm00001eb437920 Zea mays HOM05D001750 ORTHO05D001825 9.5e-07 57.8 168 29.8
FvH4_c1g00470 Fragaria vesca HOM05D001750 ORTHO05D001825 1.2e-06 57.4 168 30.4
FAN14G4205 Fragaria x ananassa HOM05D001750 ORTHO05D001825 1.2e-06 57.4 168 30.4
RcHm_v2.0_MTg0498221 Rosa chinensis HOM05D001750 ORTHO05D001825 1.2e-06 57.4 168 30.4
Dinv06672 Davidia involucrata HOM05D001750 ORTHO05D001825 1.6e-06 57.0 168 30.4
SabraMtG0002600 Salix brachista HOM05D001750 ORTHO05D001825 1.6e-06 57.0 168 30.4
SalBow1G5977 Salvia bowleyana HOM05D001750 ORTHO05D001825 1.6e-06 57.0 168 30.4
Solyc00g500098.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.6e-06 57.0 168 30.4
Solyc00g500169.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.6e-06 57.0 168 30.4
Solyc00g500271.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.6e-06 57.0 168 30.4
Solyc00g500317.1 Solanum lycopersicum HOM05D001750 ORTHO05D001825 1.6e-06 57.0 168 30.4
SGA_v2.0_scaffold245G44452 Striga asiatica HOM05D001750 ORTHO05D001825 1.6e-06 57.0 168 30.4
unitig_87.g28030 Utricularia gibba HOM05D001750 ORTHO05D001825 1.6e-06 57.0 168 30.4
Aa31sc483G10 Aethionema arabicum HOM05D001750 ORTHO05D001825 2.1e-06 56.6 168 29.8
Hma1.2p1_0034F.1_g021420 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 2.1e-06 56.6 131 32.8
Hma1.2p1_1529F.1_g289140 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 2.1e-06 56.6 131 32.8
RhsimMtG0004100 Rhododendron simsii HOM05D001750 ORTHO05D001825 2.1e-06 56.6 131 32.8
Hund29121 Selenicereus undatus HOM05D001750 ORTHO05D001825 2.1e-06 56.6 131 32.8
Cfa005537 Carpinus fangiana HOM05D001750 ORTHO05D001825 2.8e-06 56.2 168 30.4
Cfa022996 Carpinus fangiana HOM05D001750 ORTHO05D001825 2.8e-06 56.2 168 30.4
SalBow1G3941 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.8e-06 56.2 136 27.2
SalBow1G4562 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.8e-06 56.2 136 27.2
SalBow1G6647 Salvia bowleyana HOM05D000729 ORTHO05D001063 2.8e-06 56.2 136 27.2
Cpa.g.sc900.3 Carica papaya HOM05D001750 ORTHO05D001825 3.6e-06 55.8 168 29.8
Glyma.15G187600 Glycine max HOM05D001750 ORTHO05D001825 3.6e-06 55.8 168 30.4
Glyma.15G187800 Glycine max HOM05D001750 ORTHO05D001825 3.6e-06 55.8 168 30.4
Gorai.002G182500 Gossypium raimondii HOM05D001750 ORTHO05D001825 3.6e-06 55.8 93 40.9
LjContig00315g0010666 Lotus japonicus HOM05D001750 ORTHO05D001825 3.6e-06 55.8 168 30.4
Lalb_Chr17g0337371 Lupinus albus HOM05D001750 ORTHO05D001825 3.6e-06 55.8 168 30.4
Phvul.004G089500 Phaseolus vulgaris HOM05D001750 ORTHO05D001825 3.6e-06 55.8 48 62.5
Phvul.005G088400 Phaseolus vulgaris HOM05D001750 ORTHO05D001825 3.6e-06 55.8 168 30.4
Sed0023702 Sechium edule HOM05D001750 ORTHO05D001825 3.6e-06 55.8 168 30.4
TPR.G28320 Trifolium pratense HOM05D001750 ORTHO05D001825 3.6e-06 55.8 168 30.4
VMungo0329G0001 Vigna mungo HOM05D001750 ORTHO05D001825 3.6e-06 55.8 168 30.4
arahy.Tifrunner.gnm1.ann1.BE3YYP Arachis hypogaea HOM05D001750 ORTHO05D001825 4.7e-06 55.5 131 32.8
Ca_22167_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 4.7e-06 55.5 131 32.8
Ca_22168_v3 Cicer arietinum L. HOM05D001750 ORTHO05D001825 4.7e-06 55.5 131 32.8
Migut.D01322 Erythranthe guttata HOM05D000729 ORTHO05D001063 6.2e-06 55.1 136 27.2
FAN14G0206 Fragaria x ananassa HOM05D001750 ORTHO05D001825 6.2e-06 55.1 160 30.6
Solyc11g021190.2 Solanum lycopersicum HOM05D001750 ORTHO05D001825 6.2e-06 55.1 55 54.5
CAN.G134.25 Capsicum annuum HOM05D001750 ORTHO05D001825 8.0e-06 54.7 168 30.4
Hma1.2p1_0066F.1_g036370 Hydrangea macrophylla HOM05D001750 ORTHO05D001825 8.0e-06 54.7 37 81.1
Potri.011G075051 Populus trichocarpa HOM05D000729 ORTHO05D001063 8.0e-06 54.7 135 28.9


User provided reference genes

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