Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g044605.1 Solanum lycopersicum HOM05D002907 ORTHO05D005554 6.2e-143 510.8 256 100.0
Sopen08g012630 Solanum pennellii HOM05D000096 ORTHO05D000045 1.1e-99 367.1 269 76.2
Solyc02g044000.3 Solanum lycopersicum HOM05D002907 ORTHO05D005554 6.4e-63 245.0 259 57.1
Solyc02g055533.1 Solanum lycopersicum HOM05D003235 ORTHO05D003863 3.9e-60 235.7 144 86.1
Peaxi162Scf00168g01413 Petunia axillaris HOM05D002907 ORTHO05D005554 1.9e-54 216.9 238 50.4
Peaxi162Scf01370g00020 Petunia axillaris HOM05D002907 ORTHO05D005554 1.9e-51 206.8 333 39.0
Nitab4.5_0000011g0020 Nicotiana tabacum HOM05D002907 ORTHO05D005554 1.4e-49 200.7 270 43.0
Peaxi162Scf00386g00927 Petunia axillaris HOM05D002907 ORTHO05D005554 2.6e-48 196.4 284 38.0
Peaxi162Scf00073g02336 Petunia axillaris HOM05D002907 ORTHO05D005554 3.4e-48 196.1 312 39.7
Peaxi162Scf00661g00421 Petunia axillaris HOM05D002907 ORTHO05D005554 3.4e-48 196.1 312 39.7
Peaxi162Scf00005g02517 Petunia axillaris HOM05D002907 ORTHO05D005554 1.7e-47 193.7 284 37.7
Peaxi162Scf00635g00615 Petunia axillaris HOM05D002907 ORTHO05D005554 2.9e-47 193.0 412 34.2
CANSAT35G0321 Cannabis sativa HOM05D002907 ORTHO05D005554 3.0e-44 183.0 283 38.5
Nitab4.5_0009770g0030 Nicotiana tabacum HOM05D002907 ORTHO05D005554 6.2e-42 175.3 269 40.5
CAN.G665.22 Capsicum annuum HOM05D002907 ORTHO05D005554 1.7e-39 167.2 256 43.8
Nitab4.5_0002986g0060 Nicotiana tabacum HOM05D002907 ORTHO05D005554 1.1e-38 164.5 273 40.3
CAN.G1160.3 Capsicum annuum HOM05D002907 ORTHO05D000065 4.6e-37 159.1 134 64.2
CAN.G181.47 Capsicum annuum HOM05D002907 ORTHO05D005554 1.0e-36 157.9 285 40.0
Solyc07g017280.3 Solanum lycopersicum HOM05D002907 ORTHO05D005554 1.8e-36 157.1 143 55.9
Nitab4.5_0001245g0050 Nicotiana tabacum HOM05D002907 ORTHO05D000065 5.1e-36 155.6 145 56.6
Peaxi162Scf00505g00016 Petunia axillaris HOM05D002907 ORTHO05D005554 1.5e-35 154.1 291 36.4
Solyc11g032020.1 Solanum lycopersicum HOM05D002907 ORTHO05D000065 1.5e-35 154.1 110 77.3
Sopen06g010830 Solanum pennellii HOM05D002907 ORTHO05D005554 2.5e-35 153.3 341 35.5
Solyc10g050400.1 Solanum lycopersicum HOM05D002907 ORTHO05D005554 3.3e-35 152.9 356 31.7
CAN.G660.34 Capsicum annuum HOM05D002907 ORTHO05D005554 4.3e-35 152.5 196 46.9
CANSAT56G3687 Cannabis sativa HOM05D002907 ORTHO05D005554 1.6e-34 150.6 145 52.4
Peaxi162Scf00816g00411 Petunia axillaris HOM05D002907 ORTHO05D005554 2.1e-34 150.2 279 36.9
Solyc12g038200.3 Solanum lycopersicum HOM05D002700 ORTHO05D003228 1.8e-33 147.1 248 40.7
Solyc10g074430.2 Solanum lycopersicum HOM05D002907 ORTHO05D005554 4.0e-33 146.0 140 56.4
CAN.G542.11 Capsicum annuum HOM05D002907 ORTHO05D005554 6.9e-33 145.2 232 40.5
Peaxi162Scf00871g00034 Petunia axillaris HOM05D002907 ORTHO05D005554 6.9e-33 145.2 142 56.3
CANSAT78G0666 Cannabis sativa HOM05D002907 ORTHO05D005554 2.6e-32 143.3 145 49.7
CANSAT64G0304 Cannabis sativa HOM05D002907 ORTHO05D000065 2.9e-31 139.8 145 48.3
DCAR_020135 Daucus carota HOM05D002907 ORTHO05D005554 4.9e-31 139.0 145 48.3
Nitab4.5_0002746g0030 Nicotiana tabacum HOM05D002907 ORTHO05D000065 3.2e-30 136.3 131 55.7
Sopen09g023780 Solanum pennellii HOM05D002907 ORTHO05D005554 2.7e-29 133.3 273 32.6
Sopen11g022000 Solanum pennellii HOM05D002907 ORTHO05D005554 2.7e-29 133.3 273 32.6
Nitab4.5_0001916g0050 Nicotiana tabacum HOM05D002907 ORTHO05D005554 4.6e-29 132.5 249 36.9
Solyc02g014340.1 Solanum lycopersicum HOM05D002907 ORTHO05D005554 3.3e-27 126.3 124 61.3
Solyc02g055537.1 Solanum lycopersicum HOM05D002907 ORTHO05D005554 1.8e-25 120.6 75 86.7
DCAR_024022 Daucus carota HOM05D002907 ORTHO05D005554 8.4e-23 111.7 283 28.3
DCAR_009226 Daucus carota HOM05D000033 ORTHO05D000913 1.1e-22 111.3 108 48.1
Peaxi162Scf00115g00007 Petunia axillaris HOM05D002907 ORTHO05D000065 1.9e-22 110.5 116 50.0
Solyc12g038810.3 Solanum lycopersicum HOM05D000088 ORTHO05D017758 4.2e-22 109.4 157 47.8
Solyc06g034070.3 Solanum lycopersicum HOM05D002907 ORTHO05D005554 5.5e-22 109.0 52 98.1
QL06p039579 Quercus lobata HOM05D002907 ORTHO05D000065 1.0e-20 104.8 186 34.9
Peaxi162Scf00715g00062 Petunia axillaris HOM05D002907 ORTHO05D000065 6.7e-20 102.1 107 45.8
Nitab4.5_0026714g0010 Nicotiana tabacum HOM05D002907 ORTHO05D005554 1.1e-19 101.3 109 49.5
Solyc10g050370.2 Solanum lycopersicum HOM05D002907 ORTHO05D005554 1.9e-19 100.5 115 48.7
Sopen01g015020 Solanum pennellii HOM05D002907 ORTHO05D005554 2.5e-19 100.1 272 29.4
Nitab4.5_0002548g0050 Nicotiana tabacum HOM05D002907 ORTHO05D005554 2.2e-18 97.1 357 25.5
QL93p0160_0016 Quercus lobata HOM05D002907 ORTHO05D000065 2.8e-18 96.7 179 35.2
DCAR_010335 Daucus carota HOM05D002907 ORTHO05D005554 1.4e-17 94.4 248 27.4
CANSAT01G3295 Cannabis sativa HOM05D002907 ORTHO05D005554 1.8e-17 94.0 108 47.2
DCAR_015940 Daucus carota HOM05D002907 ORTHO05D005554 2.4e-17 93.6 148 36.5
QL07p007200 Quercus lobata HOM05D000096 ORTHO05D000045 6.9e-17 92.0 146 39.0
Nitab4.5_0000037g0120 Nicotiana tabacum HOM05D002907 ORTHO05D005554 9.0e-17 91.7 144 42.4
Nitab4.5_0001487g0150 Nicotiana tabacum HOM05D002907 ORTHO05D005554 9.0e-17 91.7 102 47.1
CAN.G865.8 Capsicum annuum HOM05D002907 ORTHO05D005554 2.6e-16 90.1 123 46.3
QL05p044516 Quercus lobata HOM05D002907 ORTHO05D000065 5.9e-16 89.0 285 26.7
CAN.G1342.3 Capsicum annuum HOM05D001433 ORTHO05D005554 1.3e-15 87.8 122 41.0
TWI77G0313 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.7e-15 87.4 202 32.7
DCAR_029864 Daucus carota HOM05D002907 ORTHO05D005554 2.9e-15 86.7 270 25.6
Nitab4.5_0000242g0060 Nicotiana tabacum HOM05D002907 ORTHO05D000065 3.8e-15 86.3 114 42.1
Solyc01g057690.2 Solanum lycopersicum HOM05D002907 ORTHO05D005554 5.0e-15 85.9 55 78.2
Hma1.2p1_0051F.1_g029450 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 8.5e-15 85.1 132 35.6
Nitab4.5_0002746g0010 Nicotiana tabacum HOM05D002907 ORTHO05D005554 5.5e-14 82.4 52 67.3
Nitab4.5_0000162g0050 Nicotiana tabacum HOM05D002907 ORTHO05D005554 9.4e-14 81.6 52 67.3
TWI14G1065 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 2.1e-13 80.5 167 33.5
CANSAT25G3758 Cannabis sativa HOM05D002907 ORTHO05D005554 7.9e-13 78.6 62 53.2
QL04p076347 Quercus lobata HOM05D002907 ORTHO05D000065 7.9e-13 78.6 206 29.6
Hma1.2p1_0045F.1_g026410 Hydrangea macrophylla HOM05D000096 ORTHO05D000045 2.3e-12 77.0 143 34.3
Peaxi162Scf00203g01424 Petunia axillaris HOM05D002907 ORTHO05D005554 2.3e-12 77.0 52 65.4
Sopen01g012720 Solanum pennellii HOM05D002907 ORTHO05D005554 3.0e-12 76.6 194 26.8
TWI53G0107 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 3.9e-12 76.3 197 26.9
CANSAT01G2740 Cannabis sativa HOM05D002907 ORTHO05D005554 8.8e-12 75.1 48 68.8
CAN.G181.45 Capsicum annuum HOM05D002907 ORTHO05D005554 8.8e-12 75.1 77 49.4
TWI31G1318 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 2.5e-11 73.6 197 26.4
Nitab4.5_0000231g0360 Nicotiana tabacum HOM05D002907 ORTHO05D005554 3.3e-11 73.2 78 46.2
QL10p011037 Quercus lobata HOM05D002907 ORTHO05D000065 4.3e-11 72.8 144 32.6
Solyc10g054270.3 Solanum lycopersicum HOM05D002907 ORTHO05D005554 4.3e-11 72.8 120 37.5
DCAR_016581 Daucus carota HOM05D057075 ORTHO05D005554 7.4e-11 72.0 83 42.2
CAN.G419.22 Capsicum annuum HOM05D002907 ORTHO05D005554 9.7e-11 71.6 46 65.2
Peaxi162Scf00431g00510 Petunia axillaris HOM05D002907 ORTHO05D005554 9.7e-11 71.6 105 37.1
Nitab4.5_0000037g0150 Nicotiana tabacum HOM05D002907 ORTHO05D005554 2.2e-10 70.5 46 67.4
CANSAT01G3093 Cannabis sativa HOM05D002907 ORTHO05D005554 3.7e-10 69.7 45 66.7
PGSC0003DMG400039849 Solanum tuberosum HOM05D002907 ORTHO05D005554 3.7e-10 69.7 90 40.0
QL03p025410 Quercus lobata HOM05D000005 ORTHO05D000065 4.1e-09 66.2 144 28.5
CAN.G98.12 Capsicum annuum HOM05D002907 ORTHO05D005554 5.3e-09 65.9 52 57.7
Nitab4.5_0000164g0020 Nicotiana tabacum HOM05D002907 ORTHO05D005554 9.1e-09 65.1 152 32.2
BcaC01g00015 Brassica carinata HOM05D000313 ORTHO05D000065 1.5e-08 64.3 111 36.0
C03p74810 Brassica napus HOM05D000313 ORTHO05D000065 1.5e-08 64.3 111 36.0
Solyc10g050350.1 Solanum lycopersicum HOM05D002907 ORTHO05D005554 2.6e-08 63.5 73 46.6
TWI53G0762 Tripterygium wilfordii HOM05D002907 ORTHO05D007430 2.6e-08 63.5 182 29.7
TWI56G0628 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 3.4e-08 63.2 132 30.3
TWI63G0188 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 4.5e-08 62.8 135 28.1
TWI38G0982 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 7.7e-08 62.0 132 29.5
QL09p026928 Quercus lobata HOM05D000096 ORTHO05D000045 1.0e-07 61.6 125 36.8
BcaB08g35222 Brassica carinata HOM05D000313 ORTHO05D000065 1.7e-07 60.8 136 30.1
DCAR_030302 Daucus carota HOM05D002907 ORTHO05D005554 1.7e-07 60.8 80 38.8
Sopen05g018840 Solanum pennellii HOM05D002907 ORTHO05D005554 1.7e-07 60.8 184 25.5
C01p50060 Brassica napus HOM05D000313 ORTHO05D000065 2.2e-07 60.5 118 33.9
Nitab4.5_0000051g0020 Nicotiana tabacum HOM05D002907 ORTHO05D005554 2.2e-07 60.5 219 29.2
BcaB04g16903 Brassica carinata HOM05D000313 ORTHO05D000065 2.9e-07 60.1 123 29.3
BcaB03g15206 Brassica carinata HOM05D000313 ORTHO05D000065 6.5e-07 58.9 265 25.3
BolC2t12325H Brassica oleracea HOM05D000313 ORTHO05D000065 6.5e-07 58.9 123 35.8
THA.LOC104813725 Tarenaya hassleriana HOM05D000313 ORTHO05D000065 6.5e-07 58.9 125 32.0
BcaC05g28504 Brassica carinata HOM05D000313 ORTHO05D000065 8.5e-07 58.5 79 39.2
C03p49020 Brassica napus HOM05D000313 ORTHO05D000065 8.5e-07 58.5 123 33.3
BolC1t04960H Brassica oleracea HOM05D000313 ORTHO05D000065 8.5e-07 58.5 118 33.1
BolC3t17179H Brassica oleracea HOM05D000313 ORTHO05D000065 8.5e-07 58.5 123 33.3
BolC5t33306H Brassica oleracea HOM05D000313 ORTHO05D000065 8.5e-07 58.5 79 39.2
BraA03t12859Z Brassica rapa HOM05D000313 ORTHO05D000065 8.5e-07 58.5 111 32.4
Medtr3g095950 Medicago truncatula HOM05D007848 ORTHO05D000174 8.5e-07 58.5 143 30.1
Medtr3g116750 Medicago truncatula HOM05D007848 ORTHO05D000174 8.5e-07 58.5 143 30.1
DCAR_001512 Daucus carota HOM05D002907 ORTHO05D005554 1.4e-06 57.8 81 38.3
Solyc06g011610.1 Solanum lycopersicum HOM05D002907 ORTHO05D005554 1.4e-06 57.8 218 32.6
TWI32G0194 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 1.4e-06 57.8 132 28.8
Medtr7g089660 Medicago truncatula HOM05D007848 ORTHO05D000174 2.5e-06 57.0 124 30.6
C08p10590 Brassica napus HOM05D000313 ORTHO05D000065 3.2e-06 56.6 106 34.9
Sp4g05770 Schrenkiella parvula HOM05D000313 ORTHO05D000065 3.2e-06 56.6 88 34.1
BcaC09g48412 Brassica carinata HOM05D000313 ORTHO05D000065 4.2e-06 56.2 117 32.5
C02p24580 Brassica napus HOM05D000313 ORTHO05D000065 4.2e-06 56.2 118 32.2
CAN.G529.44 Capsicum annuum HOM05D000493 ORTHO05D001638 4.2e-06 56.2 106 34.9
Medtr4g070090 Medicago truncatula HOM05D002907 ORTHO05D000065 4.2e-06 56.2 151 29.1
Medtr8g088810 Medicago truncatula HOM05D007848 ORTHO05D000174 4.2e-06 56.2 143 30.1
A01p07440 Brassica napus HOM05D000313 ORTHO05D000065 5.5e-06 55.8 123 35.0
A08p13660 Brassica napus HOM05D000313 ORTHO05D000065 5.5e-06 55.8 123 35.0
BolC6t35509H Brassica oleracea HOM05D000353 ORTHO05D000174 5.5e-06 55.8 171 23.4
Medtr5g085220 Medicago truncatula HOM05D007848 ORTHO05D000174 5.5e-06 55.8 124 30.6
Ah.06g192340 Amaranthus hybridus HOM05D003062 ORTHO05D003468 7.2e-06 55.5 208 27.4
BcaC05g28890 Brassica carinata HOM05D000313 ORTHO05D000065 7.2e-06 55.5 153 28.8
BolC2t09854H Brassica oleracea HOM05D000313 ORTHO05D000065 7.2e-06 55.5 118 28.8
Medtr3g078440 Medicago truncatula HOM05D007848 ORTHO05D000174 7.2e-06 55.5 143 28.7
Medtr4g471610 Medicago truncatula HOM05D007848 ORTHO05D000174 7.2e-06 55.5 143 28.7
Medtr7g093810 Medicago truncatula HOM05D007848 ORTHO05D000174 7.2e-06 55.5 143 29.4
Medtr8g036090 Medicago truncatula HOM05D007848 ORTHO05D000174 7.2e-06 55.5 143 28.7
TPR.G6063 Trifolium pratense HOM05D000096 ORTHO05D000065 7.2e-06 55.5 152 30.9
AL5G11810 Arabidopsis lyrata HOM05D000353 ORTHO05D000174 9.4e-06 55.1 163 23.9
BcaC09g48338 Brassica carinata HOM05D000313 ORTHO05D000065 9.4e-06 55.1 123 34.1
A09p23680 Brassica napus HOM05D000313 ORTHO05D000065 9.4e-06 55.1 123 30.1
A09p47000 Brassica napus HOM05D000313 ORTHO05D000065 9.4e-06 55.1 123 30.1
C09p62680 Brassica napus HOM05D000313 ORTHO05D000065 9.4e-06 55.1 123 34.1
BraA09t40166Z Brassica rapa HOM05D000313 ORTHO05D000065 9.4e-06 55.1 123 30.1
Thhalv10002267m.g Eutrema salsugineum HOM05D000353 ORTHO05D000174 9.4e-06 55.1 200 26.0
Medtr1g036740 Medicago truncatula HOM05D007848 ORTHO05D000174 9.4e-06 55.1 143 28.7
Medtr8g096680 Medicago truncatula HOM05D007848 ORTHO05D000174 9.4e-06 55.1 143 28.7
QL02p000008 Quercus lobata HOM05D000096 ORTHO05D000045 9.4e-06 55.1 80 41.2
Solyc09g150120.1 Solanum lycopersicum HOM05D002907 ORTHO05D005554 9.4e-06 55.1 27 96.3
TWI39G0710 Tripterygium wilfordii HOM05D002907 ORTHO05D000065 9.4e-06 55.1 129 29.5


User provided reference genes

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