Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g042873.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 4.2e-52 207.6 96 100.0
Sopen08g007140 Solanum pennellii HOM05D000107 ORTHO05D000570 7.8e-22 107.1 124 46.8
Sopen10g012240 Solanum pennellii HOM05D000107 ORTHO05D000385 2.3e-21 105.5 97 57.7
Sopen08g013620 Solanum pennellii HOM05D008041 ORTHO05D000385 6.6e-21 104.0 50 90.0
Sopen11g019250 Solanum pennellii HOM05D000107 ORTHO05D014265 4.0e-18 94.7 45 95.6
PGSC0003DMG400034515 Solanum tuberosum HOM05D008041 ORTHO05D000385 1.2e-17 93.2 42 95.2
Sopen10g008660 Solanum pennellii HOM05D008041 ORTHO05D000385 5.8e-17 90.9 45 91.1
Sopen02g007300 Solanum pennellii HOM05D002469 ORTHO05D000385 8.3e-16 87.0 50 78.0
Sopen09g017580 Solanum pennellii HOM05D000107 ORTHO05D014265 1.9e-15 85.9 44 88.6
PGSC0003DMG400046273 Solanum tuberosum HOM05D008041 ORTHO05D000385 3.5e-14 81.6 47 74.5
Sopen10g011670 Solanum pennellii HOM05D000107 ORTHO05D014265 1.0e-13 80.1 44 84.1
Sopen01g006470 Solanum pennellii HOM05D008041 ORTHO05D000385 1.7e-13 79.3 47 70.2
Sopen01g007850 Solanum pennellii HOM05D008041 ORTHO05D000385 1.7e-13 79.3 47 70.2
Sopen03g012270 Solanum pennellii HOM05D008041 ORTHO05D000385 1.7e-13 79.3 47 70.2
Sopen04g017170 Solanum pennellii HOM05D008041 ORTHO05D000385 1.7e-13 79.3 47 70.2
Sopen07g025660 Solanum pennellii HOM05D008041 ORTHO05D000385 1.7e-13 79.3 47 70.2
Sopen09g017170 Solanum pennellii HOM05D008041 ORTHO05D000385 1.7e-13 79.3 47 70.2
Sopen12g016000 Solanum pennellii HOM05D008041 ORTHO05D000385 1.7e-13 79.3 47 70.2
Solyc06g036805.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 2.3e-13 79.0 47 68.1
Solyc09g014641.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 2.3e-13 79.0 47 68.1
PGSC0003DMG400042422 Solanum tuberosum HOM05D008041 ORTHO05D000385 6.6e-13 77.4 47 66.0
PGSC0003DMG400043689 Solanum tuberosum HOM05D000107 ORTHO05D014265 1.5e-12 76.3 42 83.3
Solyc01g034040.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 1.9e-12 75.9 47 68.1
Solyc10g061845.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 5.6e-12 74.3 46 69.6
Sopen04g010730 Solanum pennellii HOM05D008041 ORTHO05D000385 5.6e-12 74.3 47 68.1
Sopen10g021280 Solanum pennellii HOM05D008041 ORTHO05D000385 5.6e-12 74.3 46 71.7
Sopen07g020910 Solanum pennellii HOM05D008041 ORTHO05D000385 7.3e-12 73.9 47 61.7
Solyc05g032825.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 9.6e-12 73.6 47 66.0
Sopen01g007430 Solanum pennellii HOM05D008041 ORTHO05D000385 9.6e-12 73.6 45 68.9
Solyc10g018713.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 1.6e-11 72.8 47 66.0
Solyc02g081085.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 4.7e-11 71.2 47 63.8
Solyc05g041113.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 6.2e-11 70.9 43 69.8
CAN.G637.27 Capsicum annuum HOM05D000229 ORTHO05D000385 1.4e-10 69.7 47 63.8
Sopen09g018580 Solanum pennellii HOM05D004615 ORTHO05D000385 2.4e-10 68.9 48 60.4
PGSC0003DMG400034488 Solanum tuberosum HOM05D008583 ORTHO05D014265 5.2e-10 67.8 41 80.5
Sopen09g017230 Solanum pennellii HOM05D000107 ORTHO05D014265 6.8e-10 67.4 40 77.5
Sopen07g006310 Solanum pennellii HOM05D000107 ORTHO05D014265 3.4e-09 65.1 42 66.7
Sopen09g017160 Solanum pennellii HOM05D000107 ORTHO05D014265 4.4e-09 64.7 42 66.7
Solyc08g016567.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 7.6e-09 63.9 41 65.9
PGSC0003DMG400042404 Solanum tuberosum HOM05D000107 ORTHO05D014265 7.6e-09 63.9 42 64.3
PGSC0003DMG400043749 Solanum tuberosum HOM05D000107 ORTHO05D014265 9.9e-09 63.5 42 69.0
Solyc10g050065.1 Solanum lycopersicum HOM05D000107 ORTHO05D014265 1.3e-08 63.2 42 66.7
Sopen01g006480 Solanum pennellii HOM05D000107 ORTHO05D000062 1.3e-08 63.2 42 64.3
Sopen07g020900 Solanum pennellii HOM05D000107 ORTHO05D000062 2.2e-08 62.4 42 64.3
Sopen03g027010 Solanum pennellii HOM05D000107 ORTHO05D014265 4.9e-08 61.2 42 64.3
Sopen04g010740 Solanum pennellii HOM05D000107 ORTHO05D000062 4.9e-08 61.2 42 64.3
Sopen12g014810 Solanum pennellii HOM05D008041 ORTHO05D000385 4.9e-08 61.2 35 71.4
Sopen12g014820 Solanum pennellii HOM05D000107 ORTHO05D000062 4.9e-08 61.2 42 64.3
PGSC0003DMG400043540 Solanum tuberosum HOM05D000107 ORTHO05D014265 6.4e-08 60.8 42 64.3
Sopen02g004240 Solanum pennellii HOM05D000107 ORTHO05D000062 1.4e-07 59.7 42 61.9
Sopen08g019930 Solanum pennellii HOM05D000107 ORTHO05D000062 1.4e-07 59.7 42 64.3
Lj2g0010843 Lotus japonicus HOM05D004615 ORTHO05D000385 2.4e-07 58.9 46 47.8
Lj3g0027022 Lotus japonicus HOM05D004615 ORTHO05D000385 2.4e-07 58.9 46 47.8
SGA_v2.0_scaffold39G15343 Striga asiatica HOM05D004615 ORTHO05D000385 3.2e-07 58.5 46 52.2
Sopen04g021200 Solanum pennellii HOM05D000004 ORTHO05D000002 4.2e-07 58.2 42 61.9
Medtr5g061300 Medicago truncatula HOM05D004615 ORTHO05D000385 9.3e-07 57.0 49 53.1
EL10Ac1g01142 Beta vulgaris HOM05D004615 ORTHO05D000385 1.6e-06 56.2 48 50.0
EL10Ac1g01684 Beta vulgaris HOM05D004615 ORTHO05D000385 1.6e-06 56.2 48 50.0
EL10Ac1g01751 Beta vulgaris HOM05D004615 ORTHO05D000385 1.6e-06 56.2 48 50.0
EL10Ac5g11185 Beta vulgaris HOM05D004615 ORTHO05D000385 1.6e-06 56.2 48 50.0
EL10Ac9g22640 Beta vulgaris HOM05D004615 ORTHO05D000385 1.6e-06 56.2 48 50.0
EL10As16g24148 Beta vulgaris HOM05D004615 ORTHO05D000385 1.6e-06 56.2 48 50.0
EL10Ac2g02894 Beta vulgaris HOM05D004615 ORTHO05D000385 2.1e-06 55.8 48 50.0
Solyc05g150139.1 Solanum lycopersicum HOM05D008041 ORTHO05D000385 2.1e-06 55.8 42 61.9
AUR62034499 Chenopodium quinoa HOM05D004615 ORTHO05D000385 2.7e-06 55.5 50 44.0
AUR62026468 Chenopodium quinoa HOM05D000107 ORTHO05D000062 3.5e-06 55.1 48 45.8
SGA_v2.0_scaffold279G46788 Striga asiatica HOM05D004615 ORTHO05D000385 3.5e-06 55.1 48 45.8
AUR62030145 Chenopodium quinoa HOM05D004615 ORTHO05D000385 4.6e-06 54.7 46 45.7
Sopen11g015220 Solanum pennellii HOM05D000107 ORTHO05D014265 4.6e-06 54.7 43 60.5
AUR62005789 Chenopodium quinoa HOM05D004615 ORTHO05D000385 6.0e-06 54.3 46 45.7
AUR62040424 Chenopodium quinoa HOM05D004615 ORTHO05D000385 6.0e-06 54.3 46 45.7
AUR62041975 Chenopodium quinoa HOM05D000107 ORTHO05D000062 6.0e-06 54.3 49 46.9
SGA_v2.0_scaffold251G45054 Striga asiatica HOM05D004615 ORTHO05D000385 6.0e-06 54.3 46 41.3
EL10Ac7g17658 Beta vulgaris HOM05D004615 ORTHO05D000385 7.8e-06 53.9 48 47.9
AUR62019486 Chenopodium quinoa HOM05D004615 ORTHO05D000385 7.8e-06 53.9 46 45.7
AUR62043436 Chenopodium quinoa HOM05D009343 ORTHO05D000385 7.8e-06 53.9 50 46.0
Lj1g0024910 Lotus japonicus HOM05D004615 ORTHO05D007166 7.8e-06 53.9 48 50.0


User provided reference genes

Program Settings