Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g042470.1 Solanum lycopersicum HOM05D005625 ORTHO05D007564 2.4e-248 861.7 431 100.0
Sopen11g018630 Solanum pennellii HOM05D005625 ORTHO05D007564 1.9e-237 825.5 422 97.6
CAN.G990.6 Capsicum annuum HOM05D005625 ORTHO05D007564 6.7e-214 747.3 422 88.6
Nitab4.5_0001155g0010 Nicotiana tabacum HOM05D005625 ORTHO05D007564 1.1e-208 729.9 415 87.2
Peaxi162Scf00078g00533 Petunia axillaris HOM05D005625 ORTHO05D007564 3.8e-201 704.9 416 82.9
Oeu028924.1 Olea europaea HOM05D005625 ORTHO05D007564 4.5e-162 575.1 415 70.4
CSS0007097 Camellia sinensis var. sinensis HOM05D005625 ORTHO05D007564 6.6e-161 571.2 422 66.8
TAR381G1540 Trochodendron aralioides HOM05D005625 ORTHO05D007564 2.5e-160 569.3 407 69.0
Dinv16108 Davidia involucrata HOM05D005625 ORTHO05D007564 4.2e-160 568.5 411 67.9
Rhsim02G0173300 Rhododendron simsii HOM05D005625 ORTHO05D007564 5.7e-157 558.1 405 70.6
Actinidia29383 Actinidia chinensis HOM05D005625 ORTHO05D007564 7.0e-155 551.2 411 67.6
Cc10_g08740 Coffea canephora HOM05D005625 ORTHO05D007564 2.7e-154 549.3 411 66.4
MSTRG.25496 Avicennia marina HOM05D005625 ORTHO05D007564 1.1e-152 543.9 414 65.5
GSVIVG01036380001 Vitis vinifera HOM05D005625 ORTHO05D007564 7.3e-152 541.2 414 63.5
Lj7C421T14 Lonicera japonica HOM05D005625 ORTHO05D007564 9.5e-152 540.8 413 65.9
Haze_13951 Corylus avellana HOM05D005625 ORTHO05D007564 1.2e-151 540.4 420 63.8
Prupe.1G544200 Prunus persica HOM05D005625 ORTHO05D007564 3.6e-151 538.9 414 64.0
CiPaw.04G063100 Carya illinoinensis HOM05D005625 ORTHO05D007564 4.7e-151 538.5 407 64.6
Gohir.A13G116000 Gossypium hirsutum HOM05D005625 ORTHO05D007564 1.4e-150 537.0 408 64.5
RcHm_v2.0_Chr7g0232101 Rosa chinensis HOM05D005625 ORTHO05D007564 1.8e-150 536.6 406 64.8
MD15G1395400 Malus domestica HOM05D005625 ORTHO05D007564 1.2e-149 533.9 407 63.9
Gorai.013G133700 Gossypium raimondii HOM05D005625 ORTHO05D007564 1.5e-149 533.5 408 64.5
Sc14g0005960 Simmondsia chinensis HOM05D005625 ORTHO05D007564 2.0e-149 533.1 430 64.0
Gohir.D13G119200 Gossypium hirsutum HOM05D005625 ORTHO05D007564 2.6e-149 532.7 408 64.5
Potri.019G072700 Populus trichocarpa HOM05D005625 ORTHO05D007564 3.4e-149 532.3 406 63.5
TWI18G0532 Tripterygium wilfordii HOM05D005625 ORTHO05D007564 9.8e-149 530.8 407 65.6
AUR62030641 Chenopodium quinoa HOM05D005625 ORTHO05D007564 6.4e-148 528.1 413 64.9
DCAR_006209 Daucus carota HOM05D005625 ORTHO05D007564 6.4e-148 528.1 406 65.0
DCAR_017431 Daucus carota HOM05D005625 ORTHO05D007564 6.4e-148 528.1 408 64.2
FvH4_5g33370 Fragaria vesca HOM05D005625 ORTHO05D007564 8.3e-148 527.7 399 64.4
Migut.C01373 Erythranthe guttata HOM05D005625 ORTHO05D007564 1.1e-147 527.3 400 65.0
FAN18G2766 Fragaria x ananassa HOM05D005625 ORTHO05D007564 1.4e-147 526.9 399 64.4
CANSAT56G1751 Cannabis sativa HOM05D005625 ORTHO05D007564 4.1e-147 525.4 399 65.2
Thecc.08G177300 Theobroma cacao HOM05D005625 ORTHO05D007564 4.1e-147 525.4 400 65.2
MELO3C011830.2 Cucumis melo HOM05D005625 ORTHO05D007564 7.0e-147 524.6 407 62.9
AUR62024898 Chenopodium quinoa HOM05D005625 ORTHO05D007564 1.6e-146 523.5 413 64.2
QL09p002063 Quercus lobata HOM05D005625 ORTHO05D007564 1.6e-146 523.5 406 64.3
COL.COLO4_24882 Corchorus olitorius HOM05D005625 ORTHO05D007564 4.6e-146 521.9 408 63.2
CsaV3_1G044090 Cucumis sativus L. HOM05D005625 ORTHO05D007564 6.0e-146 521.5 407 62.9
Sabra19G0084000 Salix brachista HOM05D005625 ORTHO05D007564 1.7e-145 520.0 424 60.1
PSO017G2953 Papaver somniferum HOM05D005625 ORTHO05D007564 2.3e-145 519.6 401 62.8
ECA232G1187 Erigeron canadensis HOM05D005625 ORTHO05D007564 3.0e-145 519.2 399 63.9
PGR044G1301 Punica granatum HOM05D005625 ORTHO05D007564 6.6e-145 518.1 412 62.4
Aqoxy5G00836 Aquilegia oxysepala HOM05D005625 ORTHO05D007564 1.5e-144 516.9 408 63.0
Ah.02g127420 Amaranthus hybridus HOM05D005625 ORTHO05D007564 3.3e-144 515.8 407 63.9
Lj6g0017830 Lotus japonicus HOM05D005625 ORTHO05D007564 4.3e-144 515.4 397 63.0
Cfa008087 Carpinus fangiana HOM05D005625 ORTHO05D007564 5.6e-144 515.0 407 63.1
HanXRQChr11g0326321 Helianthus annuus HOM05D005625 ORTHO05D007564 1.6e-143 513.5 401 64.3
Ciclev10014850m.g Citrus clementina HOM05D005625 ORTHO05D007564 3.6e-143 512.3 407 62.4
Phvul.006G130900 Phaseolus vulgaris HOM05D005625 ORTHO05D007564 3.6e-143 512.3 395 63.8
PSO170G6063 Papaver somniferum HOM05D005625 ORTHO05D007564 1.1e-142 510.8 401 62.1
arahy.Tifrunner.gnm1.ann1.I4CKLR Arachis hypogaea HOM05D005625 ORTHO05D007564 6.8e-142 508.1 433 59.4
Manes.18G118300 Manihot esculenta HOM05D005625 ORTHO05D007564 2.0e-141 506.5 403 63.3
Medtr2g029250 Medicago truncatula HOM05D005625 ORTHO05D007564 5.8e-141 505.0 414 60.6
Sed0019265 Sechium edule HOM05D005625 ORTHO05D007564 7.5e-141 504.6 407 61.9
arahy.Tifrunner.gnm1.ann1.U40EKY Arachis hypogaea HOM05D005625 ORTHO05D007564 1.3e-140 503.8 449 57.5
FAN04G0928 Fragaria x ananassa HOM05D005625 ORTHO05D007564 2.2e-140 503.1 418 60.5
Lalb_Chr15g0088631 Lupinus albus HOM05D005625 ORTHO05D007564 4.9e-140 501.9 407 61.9
MBI03_g28415_MAGBIO Magnolia biondii HOM05D005625 ORTHO05D007564 8.3e-140 501.1 415 60.2
Glyma.09G021200 Glycine max HOM05D005625 ORTHO05D007564 1.9e-139 500.0 395 62.3
Lsat_1_v5_gn_2_82040 Lactuca sativa HOM05D005625 ORTHO05D007564 7.8e-138 494.6 408 63.2
ATR1089G039 Amborella trichopoda HOM05D005625 ORTHO05D007564 3.0e-137 492.7 407 59.5
SGA_v2.0_scaffold118G32606 Striga asiatica HOM05D005625 ORTHO05D007564 1.5e-136 490.3 427 59.7
arahy.Tifrunner.gnm1.ann1.23CDJN Arachis hypogaea HOM05D005625 ORTHO05D007564 5.6e-136 488.4 414 59.7
THA.LOC104810982 Tarenaya hassleriana HOM05D005625 ORTHO05D007564 7.3e-136 488.0 400 61.2
Eucgr.K01840 Eucalyptus grandis HOM05D005625 ORTHO05D007564 9.5e-136 487.6 404 60.4
Aa31LG4G9140 Aethionema arabicum HOM05D005625 ORTHO05D007564 1.2e-135 487.3 413 60.5
Carub.0002s1829 Capsella rubella HOM05D005625 ORTHO05D007564 3.6e-135 485.7 413 59.8
AL2G31100 Arabidopsis lyrata HOM05D005625 ORTHO05D007564 1.1e-134 484.2 413 59.3
Thhalv10018392m.g Eutrema salsugineum HOM05D005625 ORTHO05D007564 1.1e-134 484.2 413 60.0
TPR.G17519 Trifolium pratense HOM05D005625 ORTHO05D007564 1.1e-134 484.2 395 60.8
CARHR291240 Cardamine hirsuta HOM05D005625 ORTHO05D007564 8.9e-134 481.1 400 61.8
EL10Ac6g14591 Beta vulgaris HOM05D005625 ORTHO05D007564 2.6e-133 479.6 471 54.4
AT1G71440 Arabidopsis thaliana HOM05D005625 ORTHO05D007564 3.4e-133 479.2 405 60.5
Sp5g26600 Schrenkiella parvula HOM05D005625 ORTHO05D007564 1.7e-129 466.8 400 59.5
arahy.Tifrunner.gnm1.ann1.0NEN23 Arachis hypogaea HOM05D005625 ORTHO05D007564 6.2e-127 458.4 474 52.7
Psat1g169440 Pisum sativum HOM05D005625 ORTHO05D007564 2.4e-126 456.4 396 56.6
VMungo0540G1936 Vigna mungo HOM05D005625 ORTHO05D007564 3.4e-125 452.6 422 55.5
unitig_578.g16118 Utricularia gibba HOM05D005625 ORTHO05D007564 7.6e-125 451.4 400 57.0
Duzib177G0227 Durio zibethinus HOM05D005625 ORTHO05D007564 1.9e-123 446.8 411 58.4
HPP92_015711 Vanilla planifolia HOM05D005625 ORTHO05D007564 7.1e-123 444.9 425 54.4
Zm00001eb233200 Zea mays HOM05D005625 ORTHO05D007564 1.6e-122 443.7 417 53.2
HPP92_026650 Vanilla planifolia HOM05D005625 ORTHO05D007564 9.6e-120 434.5 425 53.2
BraA07t31336Z Brassica rapa HOM05D005625 ORTHO05D007564 2.8e-119 433.0 406 55.4
BolC6t39611H Brassica oleracea HOM05D005625 ORTHO05D007564 1.8e-118 430.3 406 54.9
A07p37730 Brassica napus HOM05D005625 ORTHO05D007564 2.4e-118 429.9 406 54.9
Nn5g27281 Nelumbo nucifera HOM05D005625 ORTHO05D007564 1.7e-116 423.7 306 65.7
BcaC08g46580 Brassica carinata HOM05D005625 ORTHO05D007564 1.1e-115 421.0 405 55.1
Ca_07151_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 3.5e-114 416.0 351 58.4
Sabra15G0066200 Salix brachista HOM05D005625 ORTHO05D007564 3.6e-111 406.0 352 57.1
C06p45600 Brassica napus HOM05D005625 ORTHO05D007564 1.4e-110 404.1 406 53.2
Sabra15G0066000 Salix brachista HOM05D005625 ORTHO05D007564 1.4e-110 404.1 352 56.8
Cpa.g.sc21.80 Carica papaya HOM05D005625 ORTHO05D007564 6.9e-110 401.7 306 63.4
SMO145G0237 Selaginella moellendorffii HOM05D005625 ORTHO05D007564 1.7e-108 397.1 405 47.2
Ca_00793_v3 Cicer arietinum L. HOM05D005625 ORTHO05D007564 2.2e-108 396.7 351 56.7
Nitab4.5_0000213g0250 Nicotiana tabacum HOM05D005625 ORTHO05D007564 4.0e-102 375.9 212 86.8
vmacro11035 Vaccinium macrocarpon HOM05D005625 ORTHO05D007564 1.9e-99 367.1 474 46.0
Pp3c13_4420 Physcomitrium patens HOM05D005625 ORTHO05D007564 2.5e-99 366.7 416 46.6
Mapoly0057s0080 Marchantia polymorpha HOM05D005625 ORTHO05D007564 3.2e-99 366.3 415 48.4
SHI16719 Sapria himalayana HOM05D005625 ORTHO05D007564 2.1e-98 363.6 414 48.6
AagrBONN_evm.TU.Sc2ySwM_344.4267 Anthoceros agrestis HOM05D005625 ORTHO05D007564 3.0e-97 359.8 415 45.5
PGSC0003DMG400019987 Solanum tuberosum HOM05D005625 ORTHO05D007564 2.5e-88 330.1 173 96.5
Pp3c9_6720 Physcomitrium patens HOM05D005625 ORTHO05D007564 4.2e-83 312.8 403 44.2
CBR_g2823 Chara braunii HOM05D005625 ORTHO05D007564 2.2e-71 273.9 422 40.3
AagrBONN_evm.TU.Sc2ySwM_344.5166 Anthoceros agrestis HOM05D005625 ORTHO05D007564 1.3e-60 238.0 282 47.9
Cre02.g095113 Chlamydomonas reinhardtii HOM05D005625 ORTHO05D007564 9.1e-54 215.3 511 30.9
Atru.chr11.652 Acer truncatum HOM05D005625 ORTHO05D007564 1.7e-52 211.1 166 60.2
MCO15G211 Micromonas commoda HOM05D005625 ORTHO05D007564 5.5e-51 206.1 425 32.0
ClCG03G011750 Citrullus lanatus HOM05D005625 ORTHO05D007564 2.7e-50 203.8 166 60.8
ClCG03G011780 Citrullus lanatus HOM05D005625 ORTHO05D007564 1.0e-49 201.8 159 63.5
PRCOL_00002543 Prasinoderma coloniale HOM05D005625 ORTHO05D007564 8.8e-49 198.7 422 32.5
SEGI_17074 Sequoiadendron giganteum HOM05D005625 ORTHO05D007564 9.8e-48 195.3 157 59.9
Os05g0105300 Oryza sativa ssp. japonica HOM05D005625 ORTHO05D007564 2.0e-45 187.6 171 55.0
Glyma.15G127633 Glycine max HOM05D005625 ORTHO05D007564 3.2e-38 163.7 123 61.8
Glyma.15G127567 Glycine max HOM05D005625 ORTHO05D007564 7.0e-38 162.5 125 62.4
BcaB04g17633 Brassica carinata HOM05D005625 ORTHO05D007564 9.5e-27 125.6 100 66.0
Cfa026593 Carpinus fangiana HOM05D005625 ORTHO05D007564 1.3e-23 115.2 426 27.5
FAN08G2869 Fragaria x ananassa HOM05D005625 ORTHO05D007564 9.2e-22 109.0 74 67.6
TPR.G26547 Trifolium pratense HOM05D005625 ORTHO05D022022 8.6e-20 102.4 94 54.3
C02p28970 Brassica napus HOM05D005625 ORTHO05D022022 8.4e-15 85.9 72 59.7
ClCG03G011760 Citrullus lanatus HOM05D000004 ORTHO05D000002 1.4e-14 85.1 75 56.0
BolC2t08946H Brassica oleracea HOM05D005625 ORTHO05D022022 3.2e-14 84.0 71 59.2
A02p17310 Brassica napus HOM05D005625 ORTHO05D022022 6.0e-13 79.7 71 56.3
BraA02t06779Z Brassica rapa HOM05D005625 ORTHO05D022022 6.0e-13 79.7 71 56.3
Cre01.g023550 Chlamydomonas reinhardtii HOM05D016773 ORTHO05D019668 5.6e-11 73.2 274 27.4
arahy.Tifrunner.gnm1.ann1.6SNM9F Arachis hypogaea HOM05D005625 ORTHO05D007564 1.2e-10 72.0 115 41.7
PSO478G1928 Papaver somniferum HOM05D005625 ORTHO05D002418 2.1e-10 71.2 64 57.8
arahy.Tifrunner.gnm1.ann1.GWKT0Q Arachis hypogaea HOM05D005625 ORTHO05D007564 1.4e-09 68.6 114 37.7
Lsat_1_v5_gn_3_107600 Lactuca sativa HOM05D000629 ORTHO05D013393 2.4e-09 67.8 74 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1004 Anthoceros agrestis HOM05D016773 ORTHO05D019668 1.2e-08 65.5 270 24.8
Cpa.g.c47759 Carica papaya HOM05D005625 ORTHO05D007564 2.9e-07 60.8 49 53.1
Eucgr.E04263 Eucalyptus grandis HOM05D000311 ORTHO05D000183 4.9e-07 60.1 263 26.6
SMO009G0022 Selaginella moellendorffii HOM05D016773 ORTHO05D019668 6.4e-07 59.7 271 26.9
TWI34G1007 Tripterygium wilfordii HOM05D000311 ORTHO05D000183 1.4e-06 58.5 288 25.7
Cre15.g636300 Chlamydomonas reinhardtii HOM05D005979 ORTHO05D007848 2.4e-06 57.8 69 50.7


User provided reference genes

Program Settings