Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g040130.2 Solanum lycopersicum HOM05D007261 ORTHO05D009163 2.1e-138 495.7 258 100.0
Sopen11g017340 Solanum pennellii HOM05D007261 ORTHO05D009163 8.2e-135 483.8 258 98.1
PGSC0003DMG400002189 Solanum tuberosum HOM05D007261 ORTHO05D009163 5.2e-129 464.5 258 94.2
Nitab4.5_0005286g0010 Nicotiana tabacum HOM05D007261 ORTHO05D009163 1.0e-116 423.7 256 86.3
CAN.G624.13 Capsicum annuum HOM05D007261 ORTHO05D009163 8.0e-114 414.1 258 84.5
Peaxi162Scf01167g00120 Petunia axillaris HOM05D007261 ORTHO05D009163 2.0e-112 409.5 256 84.4
Dinv04437 Davidia involucrata HOM05D007261 ORTHO05D009163 1.7e-92 343.2 265 70.2
Hma1.2p1_0738F.1_g210990 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 1.7e-92 343.2 243 72.0
Cc11_g14850 Coffea canephora HOM05D007261 ORTHO05D009163 1.1e-91 340.5 234 72.6
Rhsim12G0015700 Rhododendron simsii HOM05D007261 ORTHO05D009163 1.5e-91 340.1 239 73.6
FvH4_4g22120 Fragaria vesca HOM05D007261 ORTHO05D009163 3.6e-90 335.5 255 66.7
FAN12G3746 Fragaria x ananassa HOM05D007261 ORTHO05D009163 8.1e-90 334.3 255 66.3
MD16G1145000 Malus domestica HOM05D007261 ORTHO05D009163 1.1e-89 334.0 239 70.3
Potri.001G070800 Populus trichocarpa HOM05D007261 ORTHO05D009163 1.4e-89 333.6 245 68.6
MD13G1134400 Malus domestica HOM05D007261 ORTHO05D009163 3.1e-89 332.4 239 69.0
RcHm_v2.0_Chr4g0428371 Rosa chinensis HOM05D007261 ORTHO05D009163 5.2e-89 331.6 255 66.3
Sabra01G0049700 Salix brachista HOM05D007261 ORTHO05D009163 5.2e-89 331.6 245 68.6
Manes.09G172600 Manihot esculenta HOM05D007261 ORTHO05D009163 1.2e-88 330.5 261 65.5
FAN07G0598 Fragaria x ananassa HOM05D007261 ORTHO05D009163 1.5e-88 330.1 254 65.0
Gorai.007G068700 Gossypium raimondii HOM05D007261 ORTHO05D009163 2.0e-88 329.7 230 72.2
Gohir.D11G063500 Gossypium hirsutum HOM05D007261 ORTHO05D009163 2.6e-88 329.3 230 72.2
Gohir.A11G059400 Gossypium hirsutum HOM05D007261 ORTHO05D009163 5.8e-88 328.2 230 71.7
Ciclev10029098m.g Citrus clementina HOM05D007261 ORTHO05D009163 7.6e-88 327.8 259 67.2
FAN17G2458 Fragaria x ananassa HOM05D007261 ORTHO05D009163 7.6e-88 327.8 255 65.1
TWI36G0866 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 7.6e-88 327.8 260 68.8
vmacro01006 Vaccinium macrocarpon HOM05D007261 ORTHO05D009163 7.6e-88 327.8 236 71.6
Thecc.01G239300 Theobroma cacao HOM05D007261 ORTHO05D009163 1.3e-87 327.0 249 68.7
Cfa009475 Carpinus fangiana HOM05D007261 ORTHO05D009163 1.7e-87 326.6 237 70.5
HanXRQChr06g0175371 Helianthus annuus HOM05D007261 ORTHO05D009163 1.7e-87 326.6 227 73.1
AUR62003485 Chenopodium quinoa HOM05D007261 ORTHO05D009163 2.9e-87 325.9 244 68.4
SalBow2G2703 Salvia bowleyana HOM05D007261 ORTHO05D009163 4.9e-87 325.1 280 63.9
TWI18G1332 Tripterygium wilfordii HOM05D007261 ORTHO05D009163 4.9e-87 325.1 261 65.9
CSS0010700 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 6.4e-87 324.7 243 69.5
Prupe.1G211100 Prunus persica HOM05D007261 ORTHO05D009163 8.4e-87 324.3 253 66.4
Oeu021934.1 Olea europaea HOM05D007261 ORTHO05D009163 1.1e-86 323.9 243 69.5
Cpa.g.sc38.54 Carica papaya HOM05D007261 ORTHO05D009163 1.4e-86 323.6 241 68.5
CSS0041929 Camellia sinensis var. sinensis HOM05D007261 ORTHO05D009163 3.2e-86 322.4 243 69.1
PGR119G1620 Punica granatum HOM05D007261 ORTHO05D009163 3.2e-86 322.4 255 65.9
Duzib264G0686 Durio zibethinus HOM05D007261 ORTHO05D009163 4.1e-86 322.0 234 71.4
Aqoxy5G04229 Aquilegia oxysepala HOM05D007261 ORTHO05D009163 1.6e-85 320.1 236 69.1
ECA246G1741 Erigeron canadensis HOM05D007261 ORTHO05D009163 1.6e-85 320.1 237 70.0
Sed0025955 Sechium edule HOM05D007261 ORTHO05D009163 1.6e-85 320.1 257 65.8
AUR62017794 Chenopodium quinoa HOM05D007261 ORTHO05D009163 2.1e-85 319.7 244 67.6
CsaV3_3G043490 Cucumis sativus L. HOM05D007261 ORTHO05D009163 2.7e-85 319.3 241 67.6
QL03p048277 Quercus lobata HOM05D007261 ORTHO05D009163 3.5e-85 318.9 253 66.4
EL10Ac6g15388 Beta vulgaris HOM05D007261 ORTHO05D009163 4.6e-85 318.5 263 64.3
MELO3C026753.2 Cucumis melo HOM05D007261 ORTHO05D009163 4.6e-85 318.5 241 67.6
Nn4g22065 Nelumbo nucifera HOM05D007261 ORTHO05D009163 4.6e-85 318.5 240 68.8
Eucgr.J01661 Eucalyptus grandis HOM05D007261 ORTHO05D009163 2.3e-84 316.2 253 64.8
TAR629G2200 Trochodendron aralioides HOM05D007261 ORTHO05D009163 3.0e-84 315.8 231 70.1
Lj3A1078G18 Lonicera japonica HOM05D007261 ORTHO05D009163 3.9e-84 315.5 204 77.0
PSO478G2703 Papaver somniferum HOM05D007261 ORTHO05D009163 5.1e-84 315.1 221 73.3
Carub.0001s3543 Capsella rubella HOM05D007261 ORTHO05D009163 6.6e-84 314.7 244 66.4
PSO017G6922 Papaver somniferum HOM05D007261 ORTHO05D009163 8.6e-84 314.3 221 72.9
arahy.Tifrunner.gnm1.ann1.EWZS38 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.1e-83 313.9 235 67.7
arahy.Tifrunner.gnm1.ann1.X3R9N8 Arachis hypogaea HOM05D007261 ORTHO05D009163 1.1e-83 313.9 235 67.7
GSVIVG01001121001 Vitis vinifera HOM05D007261 ORTHO05D009163 1.1e-83 313.9 214 73.4
AT1G44960 Arabidopsis thaliana HOM05D007261 ORTHO05D009163 1.5e-83 313.5 241 66.8
Aa31LG7G10040 Aethionema arabicum HOM05D007261 ORTHO05D009163 3.3e-83 312.4 241 64.7
Ah.03g147240 Amaranthus hybridus HOM05D007261 ORTHO05D009163 3.3e-83 312.4 230 69.6
Glyma.18G298600 Glycine max HOM05D007261 ORTHO05D009163 3.3e-83 312.4 236 66.5
BolC6t35245H Brassica oleracea HOM05D007261 ORTHO05D009163 4.3e-83 312.0 241 66.8
C06p01120 Brassica napus HOM05D007261 ORTHO05D009163 5.6e-83 311.6 243 65.8
Hund12712 Selenicereus undatus HOM05D007261 ORTHO05D009163 7.3e-83 311.2 260 63.5
Atru.chr12.1480 Acer truncatum HOM05D007261 ORTHO05D009163 9.6e-83 310.8 244 65.2
BcaB07g33898 Brassica carinata HOM05D007261 ORTHO05D009163 9.6e-83 310.8 255 63.5
AL1G52610 Arabidopsis lyrata HOM05D007261 ORTHO05D009163 1.2e-82 310.5 244 66.4
CANSAT01G0240 Cannabis sativa HOM05D007261 ORTHO05D009163 1.2e-82 310.5 239 65.7
Glyma.08G363400 Glycine max HOM05D007261 ORTHO05D009163 1.2e-82 310.5 236 66.1
Migut.K01136 Erythranthe guttata HOM05D007261 ORTHO05D009163 2.8e-82 309.3 243 67.5
Thhalv10011722m.g Eutrema salsugineum HOM05D007261 ORTHO05D009163 2.8e-82 309.3 232 66.8
ClCG10G013090 Citrullus lanatus HOM05D007261 ORTHO05D009163 3.6e-82 308.9 245 67.3
Ca_04086_v3 Cicer arietinum L. HOM05D007261 ORTHO05D009163 4.7e-82 308.5 242 62.4
BraA10t42964Z Brassica rapa HOM05D007261 ORTHO05D009163 6.2e-82 308.1 243 64.6
A10p07140 Brassica napus HOM05D007261 ORTHO05D009163 8.1e-82 307.8 243 64.6
Phvul.008G004000 Phaseolus vulgaris HOM05D007261 ORTHO05D009163 8.1e-82 307.8 235 65.5
Psat3g206640 Pisum sativum HOM05D007261 ORTHO05D009163 1.1e-81 307.4 243 64.2
TPR.G9720 Trifolium pratense HOM05D007261 ORTHO05D009163 1.4e-81 307.0 217 68.2
CARHR036160 Cardamine hirsuta HOM05D007261 ORTHO05D009163 1.8e-81 306.6 233 65.7
Lsat_1_v5_gn_3_33201 Lactuca sativa HOM05D007261 ORTHO05D009163 2.4e-81 306.2 227 69.6
Medtr7g006790 Medicago truncatula HOM05D007261 ORTHO05D009163 2.4e-81 306.2 237 63.7
Medtr7g006800 Medicago truncatula HOM05D007261 ORTHO05D009163 2.4e-81 306.2 237 63.7
Sp1g33800 Schrenkiella parvula HOM05D007261 ORTHO05D009163 6.8e-81 304.7 228 68.0
Lj1g0023925 Lotus japonicus HOM05D007261 ORTHO05D009163 5.8e-80 301.6 234 63.7
Lalb_Chr04g0257321 Lupinus albus HOM05D007261 ORTHO05D009163 3.8e-79 298.9 232 65.9
HPP92_020118 Vanilla planifolia HOM05D007261 ORTHO05D009163 1.9e-78 296.6 232 67.2
ATR0582G128 Amborella trichopoda HOM05D007261 ORTHO05D009163 7.1e-78 294.7 234 63.7
unitig_26.g10437 Utricularia gibba HOM05D000361 ORTHO05D007482 2.1e-77 293.1 251 61.4
CDE05G0176 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 2.3e-76 289.7 239 61.9
THA.LOC104801410 Tarenaya hassleriana HOM05D007261 ORTHO05D009163 7.3e-75 284.6 234 61.1
Zm00001eb197910 Zea mays HOM05D007261 ORTHO05D009163 6.2e-74 281.6 238 59.2
Os11g0537300 Oryza sativa ssp. japonica HOM05D007261 ORTHO05D009163 1.4e-73 280.4 238 58.8
Sc17g0001500 Simmondsia chinensis HOM05D007261 ORTHO05D009163 2.6e-72 276.2 196 70.9
VMungo1383G1401 Vigna mungo HOM05D007261 ORTHO05D009163 3.4e-72 275.8 224 62.5
Haze_12532 Corylus avellana HOM05D007261 ORTHO05D009163 2.4e-70 269.6 379 43.3
Nitab4.5_0002113g0010 Nicotiana tabacum HOM05D000361 ORTHO05D007482 1.1e-67 260.8 156 87.2
CiPaw.05G097700 Carya illinoinensis HOM05D007261 ORTHO05D009163 9.0e-65 251.1 241 57.7
SEGI_21849 Sequoiadendron giganteum HOM05D007261 ORTHO05D009163 2.4e-62 243.0 183 67.2
AagrBONN_evm.TU.Sc2ySwM_228.5286 Anthoceros agrestis HOM05D007261 ORTHO05D009163 3.9e-60 235.7 246 50.8
SMO351G0136 Selaginella moellendorffii HOM05D007261 ORTHO05D009163 4.0e-57 225.7 198 57.6
Pp3c19_21680 Physcomitrium patens HOM05D007261 ORTHO05D009163 1.5e-56 223.8 222 53.6
HPP92_020128 Vanilla planifolia HOM05D007261 ORTHO05D009163 1.0e-55 221.1 192 63.0
Mapoly0073s0041 Marchantia polymorpha HOM05D007261 ORTHO05D009163 1.3e-55 220.7 223 52.5
BcaC08g42890 Brassica carinata HOM05D007261 ORTHO05D009163 1.2e-45 187.6 139 68.3
CBR_g44525 Chara braunii HOM05D007261 ORTHO05D009163 1.0e-44 184.5 238 44.5
Potri.003G159901 Populus trichocarpa HOM05D007261 ORTHO05D009163 1.6e-37 160.6 98 80.6
Actinidia30573 Actinidia chinensis HOM05D007261 ORTHO05D009163 7.4e-35 151.8 111 68.5
CDE05G1764 Ceratophyllum demersum HOM05D007261 ORTHO05D009163 3.2e-30 136.3 120 56.7
Hma1.2p1_0738F.1_g211000 Hydrangea macrophylla HOM05D007261 ORTHO05D009163 2.5e-22 110.2 84 66.7
PRCOL_00004129 Prasinoderma coloniale HOM05D007261 ORTHO05D009163 2.1e-21 107.1 186 40.3
PRCOL_00001953 Prasinoderma coloniale HOM05D005243 ORTHO05D006670 1.2e-08 64.7 178 30.3
Cfa006116 Carpinus fangiana HOM05D001530 ORTHO05D003676 1.0e-07 61.6 229 25.8
CSS0047387 Camellia sinensis var. sinensis HOM05D001530 ORTHO05D003676 1.3e-07 61.2 199 24.6
Sc17g0004010 Simmondsia chinensis HOM05D001530 ORTHO05D003676 1.7e-07 60.8 208 27.4
TAR365G1025 Trochodendron aralioides HOM05D001530 ORTHO05D003676 1.7e-07 60.8 229 25.8
arahy.Tifrunner.gnm1.ann1.AUQ61E Arachis hypogaea HOM05D001530 ORTHO05D003676 2.2e-07 60.5 239 27.6
EL10Ac1g01265 Beta vulgaris HOM05D005243 ORTHO05D006670 2.2e-07 60.5 185 31.4
Lalb_Chr13g0304101 Lupinus albus HOM05D001530 ORTHO05D003676 2.2e-07 60.5 225 24.4
CANSAT25G1297 Cannabis sativa HOM05D001530 ORTHO05D003676 2.9e-07 60.1 208 26.4
Duzib138G1359 Durio zibethinus HOM05D001530 ORTHO05D003676 2.9e-07 60.1 228 25.9
Cre06.g262000 Chlamydomonas reinhardtii HOM05D001530 ORTHO05D003676 3.8e-07 59.7 178 24.2
HanXRQChr01g0002331 Helianthus annuus HOM05D001530 ORTHO05D003676 5.0e-07 59.3 222 26.1
Dinv32953 Davidia involucrata HOM05D001530 ORTHO05D003676 8.5e-07 58.5 213 24.4
Hma1.2p1_0257F.1_g103700 Hydrangea macrophylla HOM05D001530 ORTHO05D003676 8.5e-07 58.5 199 26.6
Hund16915 Selenicereus undatus HOM05D005243 ORTHO05D006670 8.5e-07 58.5 179 30.2
THA.LOC104801224 Tarenaya hassleriana HOM05D001530 ORTHO05D003676 8.5e-07 58.5 233 24.5
AUR62038530 Chenopodium quinoa HOM05D005243 ORTHO05D006670 1.1e-06 58.2 185 29.2
Sed0026563 Sechium edule HOM05D001530 ORTHO05D003676 1.1e-06 58.2 201 25.9
MELO3C021403.2 Cucumis melo HOM05D001530 ORTHO05D003676 1.5e-06 57.8 222 25.2
CsaV3_6G018580 Cucumis sativus L. HOM05D001530 ORTHO05D003676 1.5e-06 57.8 222 25.2
AUR62013377 Chenopodium quinoa HOM05D005243 ORTHO05D006670 1.9e-06 57.4 185 29.2
Thhalv10009966m.g Eutrema salsugineum HOM05D001530 ORTHO05D003676 2.5e-06 57.0 202 26.7
Lalb_Chr01g0000051 Lupinus albus HOM05D005243 ORTHO05D006670 3.2e-06 56.6 179 30.2
AL1G12750 Arabidopsis lyrata HOM05D001530 ORTHO05D003676 4.2e-06 56.2 202 25.7
AT1G03260 Arabidopsis thaliana HOM05D001530 ORTHO05D003676 4.2e-06 56.2 212 25.5
arahy.Tifrunner.gnm1.ann1.T8IATB Arachis hypogaea HOM05D001530 ORTHO05D004168 4.2e-06 56.2 201 26.9
A09p68320 Brassica napus HOM05D001530 ORTHO05D003676 4.2e-06 56.2 202 26.2
C08p52880 Brassica napus HOM05D001530 ORTHO05D003676 4.2e-06 56.2 210 25.2
BolC8t52804H Brassica oleracea HOM05D001530 ORTHO05D003676 4.2e-06 56.2 210 25.2
BraA09t42168Z Brassica rapa HOM05D001530 ORTHO05D003676 4.2e-06 56.2 202 26.2
Carub.0001s0237 Capsella rubella HOM05D001530 ORTHO05D003676 4.2e-06 56.2 212 25.5
Cre01.g043050 Chlamydomonas reinhardtii HOM05D005243 ORTHO05D006670 4.2e-06 56.2 154 27.9
MCO11G640 Micromonas commoda HOM05D005243 ORTHO05D006670 4.2e-06 56.2 226 26.5
Sp1g02260 Schrenkiella parvula HOM05D001530 ORTHO05D003676 4.2e-06 56.2 202 26.7
Lsat_1_v5_gn_5_187301 Lactuca sativa HOM05D001530 ORTHO05D003676 5.5e-06 55.8 193 26.4
Ah.07g203960 Amaranthus hybridus HOM05D001530 ORTHO05D003676 7.2e-06 55.5 240 23.8
BcaC07g42263 Brassica carinata HOM05D001530 ORTHO05D003676 7.2e-06 55.5 202 25.7
HanXRQChr09g0267031 Helianthus annuus HOM05D005243 ORTHO05D006670 7.2e-06 55.5 179 27.9
GSVIVG01011108001 Vitis vinifera HOM05D001530 ORTHO05D003676 9.4e-06 55.1 200 25.5


User provided reference genes

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