Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g040030.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 8.5e-99 363.6 177 100.0
PGSC0003DMG400032541 Solanum tuberosum HOM05D004678 ORTHO05D005880 9.2e-61 237.3 174 73.6
Solyc04g009350.3 Solanum lycopersicum HOM05D004678 ORTHO05D005880 3.0e-59 232.3 178 71.3
Sopen04g004470 Solanum pennellii HOM05D004678 ORTHO05D005880 3.9e-59 231.9 178 71.9
CAN.G624.22 Capsicum annuum HOM05D004678 ORTHO05D005880 1.6e-57 226.5 187 67.9
Peaxi162Scf00760g00021 Petunia axillaris HOM05D004678 ORTHO05D005880 1.3e-54 216.9 183 66.1
Nitab4.5_0002113g0110 Nicotiana tabacum HOM05D004678 ORTHO05D005880 3.7e-54 215.3 187 65.2
Nitab4.5_0007261g0010 Nicotiana tabacum HOM05D004678 ORTHO05D005880 2.3e-51 206.1 214 57.9
CSS0026818 Camellia sinensis var. sinensis HOM05D004678 ORTHO05D005880 1.2e-49 200.3 177 63.8
Cc02_g14680 Coffea canephora HOM05D004678 ORTHO05D005880 1.2e-49 200.3 183 62.3
Dinv30099 Davidia involucrata HOM05D004678 ORTHO05D005880 2.1e-49 199.5 177 63.3
Oeu044536.1 Olea europaea HOM05D004678 ORTHO05D005880 4.7e-49 198.4 179 63.1
MD12G1021300 Malus domestica HOM05D004678 ORTHO05D005880 1.1e-48 197.2 176 60.2
Phvul.004G083900 Phaseolus vulgaris HOM05D004678 ORTHO05D005880 3.1e-48 195.7 176 61.9
Actinidia04312 Actinidia chinensis HOM05D004678 ORTHO05D005880 8.9e-48 194.1 176 63.1
Glyma.16G155800 Glycine max HOM05D004678 ORTHO05D005880 8.9e-48 194.1 176 61.9
Lalb_Chr01g0010011 Lupinus albus HOM05D004678 ORTHO05D005880 1.2e-47 193.7 176 61.4
LjContig00222g0007085 Lotus japonicus HOM05D004678 ORTHO05D005880 1.5e-47 193.4 176 61.4
QL04p000013 Quercus lobata HOM05D004678 ORTHO05D005880 1.5e-47 193.4 176 59.7
arahy.Tifrunner.gnm1.ann1.57RIKC Arachis hypogaea HOM05D004678 ORTHO05D005880 2.0e-47 193.0 160 65.6
VMungo0464G0500 Vigna mungo HOM05D004678 ORTHO05D005880 2.0e-47 193.0 176 61.4
Prupe.6G194700 Prunus persica HOM05D004678 ORTHO05D005880 2.6e-47 192.6 176 60.8
PGR142G3802 Punica granatum HOM05D004678 ORTHO05D005880 2.6e-47 192.6 176 60.2
Hma1.2p1_1487F.1_g286570 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 4.4e-47 191.8 169 62.7
Nn6g34909 Nelumbo nucifera HOM05D004678 ORTHO05D005880 4.4e-47 191.8 174 62.1
TAR381G1101 Trochodendron aralioides HOM05D004678 ORTHO05D005880 4.4e-47 191.8 176 62.5
Sc23g0001180 Simmondsia chinensis HOM05D004678 ORTHO05D005880 5.8e-47 191.4 176 61.4
Eucgr.L00028 Eucalyptus grandis HOM05D004678 ORTHO05D005880 7.6e-47 191.0 172 61.0
Medtr6g033540 Medicago truncatula HOM05D004678 ORTHO05D005880 7.6e-47 191.0 179 60.3
Sed0015109 Sechium edule HOM05D004678 ORTHO05D005880 7.6e-47 191.0 172 60.5
Eucgr.G01597 Eucalyptus grandis HOM05D004678 ORTHO05D005880 9.9e-47 190.7 172 61.0
CiPaw.16G062100 Carya illinoinensis HOM05D004678 ORTHO05D005880 1.3e-46 190.3 177 61.0
QL02p033997 Quercus lobata HOM05D004678 ORTHO05D005880 1.3e-46 190.3 176 58.5
Atru.chr13.1797 Acer truncatum HOM05D004678 ORTHO05D005880 1.7e-46 189.9 175 59.4
AT1G71920 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 2.2e-46 189.5 169 61.5
Hma1.2p1_0285F.1_g113940 Hydrangea macrophylla HOM05D004678 ORTHO05D005880 2.2e-46 189.5 166 63.3
GSVIVG01034496001 Vitis vinifera HOM05D004678 ORTHO05D005880 2.9e-46 189.1 167 61.1
CiPaw.15G082000 Carya illinoinensis HOM05D004678 ORTHO05D005880 4.9e-46 188.3 173 60.7
Ca_07561_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 4.9e-46 188.3 176 59.1
SalBow2G0558 Salvia bowleyana HOM05D004678 ORTHO05D005880 4.9e-46 188.3 175 58.3
SalBow2G2825 Salvia bowleyana HOM05D004678 ORTHO05D005880 4.9e-46 188.3 175 58.3
Hund16801 Selenicereus undatus HOM05D004678 ORTHO05D005880 4.9e-46 188.3 176 59.1
QL04p003199 Quercus lobata HOM05D004678 ORTHO05D005880 6.4e-46 188.0 191 55.0
TWI32G0349 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 6.4e-46 188.0 176 57.4
AUR62023572 Chenopodium quinoa HOM05D004678 ORTHO05D005880 8.4e-46 187.6 180 58.9
DCAR_026915 Daucus carota HOM05D004678 ORTHO05D005880 8.4e-46 187.6 176 60.2
Gohir.D09G114300 Gossypium hirsutum HOM05D004678 ORTHO05D005880 8.4e-46 187.6 175 58.9
Gorai.006G132200 Gossypium raimondii HOM05D004678 ORTHO05D005880 8.4e-46 187.6 175 58.9
MSTRG.13391 Avicennia marina HOM05D004678 ORTHO05D005880 1.1e-45 187.2 177 59.3
A02p17560 Brassica napus HOM05D004678 ORTHO05D005880 1.1e-45 187.2 149 65.8
BraA02t06800Z Brassica rapa HOM05D004678 ORTHO05D005880 1.1e-45 187.2 149 65.8
Migut.L01374 Erythranthe guttata HOM05D004678 ORTHO05D005880 1.1e-45 187.2 175 58.3
Gohir.A09G117500 Gossypium hirsutum HOM05D004678 ORTHO05D005880 1.1e-45 187.2 175 58.9
Hund27082 Selenicereus undatus HOM05D004678 ORTHO05D005880 1.1e-45 187.2 172 59.3
Thecc.08G181800 Theobroma cacao HOM05D004678 ORTHO05D005880 1.1e-45 187.2 155 63.2
TWI34G1123 Tripterygium wilfordii HOM05D004678 ORTHO05D005880 1.1e-45 187.2 176 59.1
Cfa018194 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.4e-45 186.8 177 59.9
Ciclev10001274m.g Citrus clementina HOM05D004678 ORTHO05D005880 1.4e-45 186.8 176 58.0
Haze_17921 Corylus avellana HOM05D004678 ORTHO05D005880 1.4e-45 186.8 176 59.1
TPR.G36715 Trifolium pratense HOM05D004678 ORTHO05D005880 1.9e-45 186.4 176 59.7
HanXRQChr06g0184941 Helianthus annuus HOM05D004678 ORTHO05D005880 2.4e-45 186.0 178 59.6
RcHm_v2.0_Chr1g0322001 Rosa chinensis HOM05D004678 ORTHO05D005880 2.4e-45 186.0 155 63.2
Aa31LG4G8700 Aethionema arabicum HOM05D004678 ORTHO05D005880 3.2e-45 185.7 157 63.1
ClCG07G016110 Citrullus lanatus HOM05D004678 ORTHO05D005880 3.2e-45 185.7 174 58.6
ClCG09G010470 Citrullus lanatus HOM05D004678 ORTHO05D005880 3.2e-45 185.7 174 59.8
Rhsim09G0073000 Rhododendron simsii HOM05D004678 ORTHO05D005880 3.2e-45 185.7 192 56.2
HPP92_016059 Vanilla planifolia HOM05D004678 ORTHO05D005880 3.2e-45 185.7 176 58.5
Zm00001eb252330 Zea mays HOM05D004678 ORTHO05D005880 3.2e-45 185.7 173 59.5
C06p45990 Brassica napus HOM05D004678 ORTHO05D005880 4.2e-45 185.3 157 62.4
BolC6t39653H Brassica oleracea HOM05D004678 ORTHO05D005880 4.2e-45 185.3 157 62.4
MELO3C023659.2 Cucumis melo HOM05D004678 ORTHO05D005880 4.2e-45 185.3 178 57.9
AL2G31530 Arabidopsis lyrata HOM05D004678 ORTHO05D005880 5.4e-45 184.9 171 60.8
EL10Ac1g00076 Beta vulgaris HOM05D004678 ORTHO05D005880 5.4e-45 184.9 192 55.2
BcaB05g24693 Brassica carinata HOM05D004678 ORTHO05D005880 7.1e-45 184.5 151 64.2
FvH4_7g02740 Fragaria vesca HOM05D004678 ORTHO05D005880 7.1e-45 184.5 177 57.1
FAN03G3192 Fragaria x ananassa HOM05D004678 ORTHO05D005880 7.1e-45 184.5 177 57.1
FAN10G3317 Fragaria x ananassa HOM05D004678 ORTHO05D005880 7.1e-45 184.5 177 57.1
Lsat_1_v5_gn_9_80761 Lactuca sativa HOM05D004678 ORTHO05D005880 7.1e-45 184.5 174 59.8
AT5G10330 Arabidopsis thaliana HOM05D004678 ORTHO05D005880 9.3e-45 184.1 171 59.6
Ca_29915_v3 Cicer arietinum L. HOM05D004678 ORTHO05D005880 9.3e-45 184.1 187 55.6
BcaB03g14912 Brassica carinata HOM05D004678 ORTHO05D005880 1.2e-44 183.7 159 61.6
COL.COLO4_19882 Corchorus olitorius HOM05D004678 ORTHO05D005880 1.2e-44 183.7 170 57.6
PSO017G6114 Papaver somniferum HOM05D004678 ORTHO05D005880 1.2e-44 183.7 168 58.3
Aqoxy6G00120 Aquilegia oxysepala HOM05D004678 ORTHO05D005880 1.6e-44 183.3 176 56.2
Duzib177G0967 Durio zibethinus HOM05D004678 ORTHO05D005880 1.6e-44 183.3 176 58.5
ECA236G1055 Erigeron canadensis HOM05D004678 ORTHO05D005880 1.6e-44 183.3 177 59.3
Thhalv10007345m.g Eutrema salsugineum HOM05D004678 ORTHO05D005880 1.6e-44 183.3 171 59.6
FAN06G1846 Fragaria x ananassa HOM05D004678 ORTHO05D005880 1.6e-44 183.3 177 57.1
BcaC03g15310 Brassica carinata HOM05D004678 ORTHO05D005880 2.1e-44 183.0 151 64.2
CDE04G3296 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 2.1e-44 183.0 172 57.6
CsaV3_7G024070 Cucumis sativus L. HOM05D004678 ORTHO05D005880 2.1e-44 183.0 174 58.0
Manes.02G191200 Manihot esculenta HOM05D004678 ORTHO05D005880 2.1e-44 183.0 172 59.3
Os02g0709200 Oryza sativa ssp. japonica HOM05D004678 ORTHO05D005880 2.1e-44 183.0 181 57.5
SGA_v2.0_scaffold8G04287 Striga asiatica HOM05D004678 ORTHO05D005880 2.1e-44 183.0 199 53.8
CANSAT21G1357 Cannabis sativa HOM05D004678 ORTHO05D005880 2.7e-44 182.6 174 57.5
unitig_699.g19496 Utricularia gibba HOM05D004678 ORTHO05D005880 2.7e-44 182.6 153 63.4
PSO063G1958 Papaver somniferum HOM05D004678 ORTHO05D005880 3.5e-44 182.2 168 58.3
ATR0152G001 Amborella trichopoda HOM05D004678 ORTHO05D005880 4.6e-44 181.8 151 64.2
HanXRQChr14g0428861 Helianthus annuus HOM05D004678 ORTHO05D005880 7.8e-44 181.0 172 59.3
Sp5g26990 Schrenkiella parvula HOM05D004678 ORTHO05D005880 7.8e-44 181.0 171 58.5
C02p29210 Brassica napus HOM05D004678 ORTHO05D005880 1.3e-43 180.3 164 59.8
BolC2t08971H Brassica oleracea HOM05D004678 ORTHO05D005880 1.3e-43 180.3 164 59.8
BcaC08g46628 Brassica carinata HOM05D004678 ORTHO05D005880 1.7e-43 179.9 159 60.4
BcaC08g46629 Brassica carinata HOM05D004678 ORTHO05D005880 1.7e-43 179.9 151 62.9
Carub.0002s1870 Capsella rubella HOM05D004678 ORTHO05D005880 2.3e-43 179.5 171 58.5
Potri.013G113900 Populus trichocarpa HOM05D004678 ORTHO05D005880 2.3e-43 179.5 172 59.9
Sabra13G0096400 Salix brachista HOM05D004678 ORTHO05D005880 2.3e-43 179.5 176 58.5
BraA07t31374Z Brassica rapa HOM05D004678 ORTHO05D005880 3.0e-43 179.1 177 55.4
A07p38090 Brassica napus HOM05D004678 ORTHO05D005880 3.9e-43 178.7 171 56.7
THA.LOC104800109 Tarenaya hassleriana HOM05D004678 ORTHO05D005880 3.9e-43 178.7 171 58.5
CARHR064740 Cardamine hirsuta HOM05D004678 ORTHO05D005880 5.1e-43 178.3 175 57.1
Cpa.g.sc36.40 Carica papaya HOM05D004678 ORTHO05D005880 5.1e-43 178.3 181 56.9
Lj3A851T66 Lonicera japonica HOM05D004678 ORTHO05D005880 5.1e-43 178.3 203 54.2
arahy.Tifrunner.gnm1.ann1.7PLX29 Arachis hypogaea HOM05D004678 ORTHO05D005880 5.3e-40 168.3 143 65.0
MBI17_g38771_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 1.5e-39 166.8 150 62.0
MBI17_g42088_MAGBIO Magnolia biondii HOM05D004678 ORTHO05D005880 1.5e-39 166.8 150 62.0
Pp3c19_9420 Physcomitrium patens HOM05D004678 ORTHO05D005880 3.8e-38 162.2 150 57.3
BcaB05g24692 Brassica carinata HOM05D004678 ORTHO05D005880 4.9e-38 161.8 145 60.7
Ah.05g178040 Amaranthus hybridus HOM05D004678 ORTHO05D005880 8.4e-38 161.0 158 58.9
AUR62004653 Chenopodium quinoa HOM05D004678 ORTHO05D005880 1.4e-37 160.2 148 61.5
SMO343G0150 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 2.1e-36 156.4 149 57.0
Mapoly0007s0122 Marchantia polymorpha HOM05D004678 ORTHO05D005880 6.0e-36 154.8 161 50.9
Cre16.g672385 Chlamydomonas reinhardtii HOM05D004678 ORTHO05D005880 5.6e-34 148.3 153 51.6
MD14G1018500 Malus domestica HOM05D004678 ORTHO05D005880 9.6e-34 147.5 140 57.1
PGSC0003DMG400008416 Solanum tuberosum HOM05D004678 ORTHO05D005880 1.4e-32 143.7 113 72.6
CBR_g40358 Chara braunii HOM05D000019 ORTHO05D000048 2.6e-31 139.4 131 56.5
Psat1g098720 Pisum sativum HOM05D004678 ORTHO05D005880 5.8e-31 138.3 171 49.7
Cfa005301 Carpinus fangiana HOM05D004678 ORTHO05D005880 1.3e-30 137.1 96 69.8
Cfa009297 Carpinus fangiana HOM05D004678 ORTHO05D005880 2.4e-29 132.9 96 68.8
PRCOL_00004069 Prasinoderma coloniale HOM05D004678 ORTHO05D005880 2.4e-29 132.9 141 49.6
GSVIVG01025261001 Vitis vinifera HOM05D004678 ORTHO05D005880 5.4e-29 131.7 96 67.7
SMO367G0035 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 1.3e-27 127.1 125 56.0
MCO01G265 Micromonas commoda HOM05D004678 ORTHO05D005880 1.9e-26 123.2 157 43.3
Sopen11g017200 Solanum pennellii HOM05D004678 ORTHO05D005880 2.5e-26 122.9 66 89.4
DCAR_023442 Daucus carota HOM05D007059 ORTHO05D008600 1.8e-24 116.7 119 56.3
SHI09056 Sapria himalayana HOM05D004678 ORTHO05D005880 5.3e-24 115.2 82 70.7
HPP92_016095 Vanilla planifolia HOM05D004678 ORTHO05D005880 9.0e-24 114.4 159 44.7
SMO035G0001 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 5.8e-23 111.7 138 48.6
TAR629G2521 Trochodendron aralioides HOM05D004678 ORTHO05D005880 2.2e-22 109.8 74 71.6
Nitab4.5_0003152g0020 Nicotiana tabacum HOM05D004678 ORTHO05D005880 7.9e-20 101.3 108 63.0
Medtr6g033600 Medicago truncatula HOM05D004678 ORTHO05D005880 1.8e-16 90.1 54 79.6
CDE07G1916 Ceratophyllum demersum HOM05D004678 ORTHO05D005880 3.4e-15 85.9 52 75.0
AagrBONN_evm.TU.Sc2ySwM_362.1592 Anthoceros agrestis HOM05D004678 ORTHO05D005880 4.2e-13 79.0 58 65.5
SMO343G0161 Selaginella moellendorffii HOM05D004678 ORTHO05D005880 3.5e-12 75.9 42 81.0
CDE07G1051 Ceratophyllum demersum HOM05D004678 ORTHO05D043902 5.7e-10 68.6 71 52.1
Nitab4.5_0001520g0040 Nicotiana tabacum HOM05D004678 ORTHO05D012214 5.9e-07 58.5 29 89.7
Psat0s2699g0200 Pisum sativum HOM05D004678 ORTHO05D043902 2.2e-06 56.6 97 39.2


User provided reference genes

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