Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g039890.2 Solanum lycopersicum HOM05D004110 ORTHO05D004810 1.8e-90 335.9 168 100.0
Sopen11g016530 Solanum pennellii HOM05D004110 ORTHO05D004810 9.0e-82 307.0 162 94.4
Nitab4.5_0007580g0010 Nicotiana tabacum HOM05D004110 ORTHO05D004810 1.1e-63 246.9 167 76.0
Nitab4.5_0006590g0020 Nicotiana tabacum HOM05D004110 ORTHO05D004810 4.1e-58 228.4 162 74.1
vmacro17378 Vaccinium macrocarpon HOM05D004110 ORTHO05D004810 3.4e-49 198.7 162 60.5
Dinv04965 Davidia involucrata HOM05D004110 ORTHO05D004810 5.0e-48 194.9 162 61.7
Rhsim05G0062900 Rhododendron simsii HOM05D004110 ORTHO05D004810 1.1e-47 193.7 162 59.9
Actinidia29167 Actinidia chinensis HOM05D004110 ORTHO05D004810 2.5e-47 192.6 162 58.6
CANSAT25G3021 Cannabis sativa HOM05D004110 ORTHO05D004810 1.4e-45 186.8 145 58.6
Cc02_g16480 Coffea canephora HOM05D004110 ORTHO05D004810 1.4e-45 186.8 164 56.1
MSTRG.20018 Avicennia marina HOM05D004110 ORTHO05D004810 2.3e-45 186.0 162 56.2
CiPaw.06G125000 Carya illinoinensis HOM05D004110 ORTHO05D004810 3.9e-45 185.3 148 56.8
Thecc.02G066600 Theobroma cacao HOM05D004110 ORTHO05D004810 3.9e-45 185.3 148 57.4
PGR142G1237 Punica granatum HOM05D004110 ORTHO05D004810 1.5e-44 183.3 148 58.1
GSVIVG01024075001 Vitis vinifera HOM05D004110 ORTHO05D004810 1.5e-44 183.3 143 59.4
QL11p047649 Quercus lobata HOM05D004110 ORTHO05D004810 2.2e-43 179.5 148 58.8
Manes.04G077900 Manihot esculenta HOM05D004110 ORTHO05D004810 2.8e-43 179.1 148 54.7
Lsat_1_v5_gn_4_74700 Lactuca sativa HOM05D004110 ORTHO05D004810 8.2e-43 177.6 147 61.2
TWI79G0689 Tripterygium wilfordii HOM05D004110 ORTHO05D004810 1.4e-42 176.8 148 56.8
PSO541G0713 Papaver somniferum HOM05D004110 ORTHO05D004810 1.8e-42 176.4 162 53.7
HanXRQChr10g0299011 Helianthus annuus HOM05D004110 ORTHO05D004810 2.4e-42 176.0 142 60.6
PSO675G3689 Papaver somniferum HOM05D004110 ORTHO05D004810 3.1e-42 175.6 162 53.7
MD05G1116500 Malus domestica HOM05D004110 ORTHO05D004810 4.1e-42 175.3 148 55.4
TAR376G1212 Trochodendron aralioides HOM05D004110 ORTHO05D004810 4.1e-42 175.3 162 50.0
Ciclev10027667m.g Citrus clementina HOM05D004110 ORTHO05D004810 5.3e-42 174.9 149 57.0
Gorai.008G034000 Gossypium raimondii HOM05D004110 ORTHO05D004810 7.0e-42 174.5 149 55.0
Lj5C184G3 Lonicera japonica HOM05D004110 ORTHO05D004810 9.1e-42 174.1 163 56.4
Cfa005187 Carpinus fangiana HOM05D004110 ORTHO05D004810 1.2e-41 173.7 143 58.0
MBI05_g07505_MAGBIO Magnolia biondii HOM05D004110 ORTHO05D004810 1.6e-41 173.3 154 54.5
DCAR_022780 Daucus carota HOM05D004110 ORTHO05D004810 2.0e-41 172.9 162 55.6
Prupe.8G161000 Prunus persica HOM05D004110 ORTHO05D004810 2.6e-41 172.6 148 56.1
RcHm_v2.0_Chr6g0245151 Rosa chinensis HOM05D004110 ORTHO05D004810 1.7e-40 169.9 143 56.6
FvH4_2g01950 Fragaria vesca HOM05D004110 ORTHO05D004810 2.2e-40 169.5 143 56.6
FAN24G2945 Fragaria x ananassa HOM05D004110 ORTHO05D004810 2.2e-40 169.5 143 56.6
THA.LOC104824773 Tarenaya hassleriana HOM05D004110 ORTHO05D004810 2.9e-40 169.1 143 53.8
Migut.B00121 Erythranthe guttata HOM05D004110 ORTHO05D004810 3.8e-40 168.7 151 54.3
Potri.009G130000 Populus trichocarpa HOM05D004110 ORTHO05D004810 5.0e-40 168.3 148 54.7
arahy.Tifrunner.gnm1.ann1.5454UR Arachis hypogaea HOM05D004110 ORTHO05D004810 8.5e-40 167.5 143 54.5
arahy.Tifrunner.gnm1.ann1.6KB8MN Arachis hypogaea HOM05D004110 ORTHO05D004810 8.5e-40 167.5 143 54.5
Phvul.011G026800 Phaseolus vulgaris HOM05D004110 ORTHO05D004810 8.5e-40 167.5 143 56.6
FAN15G2714 Fragaria x ananassa HOM05D004110 ORTHO05D004810 1.5e-39 166.8 143 55.9
EL10Ac9g21435 Beta vulgaris HOM05D004110 ORTHO05D004810 1.9e-39 166.4 146 52.7
FAN20G3101 Fragaria x ananassa HOM05D004110 ORTHO05D004810 3.2e-39 165.6 143 55.9
Carub.0007s0061 Capsella rubella HOM05D004110 ORTHO05D004810 4.2e-39 165.2 145 53.8
Glyma.12G024600 Glycine max HOM05D004110 ORTHO05D004810 5.5e-39 164.9 147 55.8
Nn5g29099 Nelumbo nucifera HOM05D004110 ORTHO05D004810 5.5e-39 164.9 162 51.2
Sed0006799 Sechium edule HOM05D004110 ORTHO05D004810 5.5e-39 164.9 151 54.3
Ca_19005_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 7.2e-39 164.5 148 54.1
Ca_30033_v3 Cicer arietinum L. HOM05D004110 ORTHO05D004810 7.2e-39 164.5 148 54.1
AL7G10630 Arabidopsis lyrata HOM05D004110 ORTHO05D004810 9.4e-39 164.1 149 51.7
Thhalv10024188m.g Eutrema salsugineum HOM05D004110 ORTHO05D004810 1.2e-38 163.7 145 53.1
CsaV3_2G015750 Cucumis sativus L. HOM05D004110 ORTHO05D004810 1.6e-38 163.3 144 55.6
ECA234G0434 Erigeron canadensis HOM05D004110 ORTHO05D004810 1.6e-38 163.3 147 55.1
Lalb_Chr01g0001341 Lupinus albus HOM05D004110 ORTHO05D004810 2.1e-38 162.9 143 55.2
Psat7g138160 Pisum sativum HOM05D004110 ORTHO05D004810 2.1e-38 162.9 146 54.1
TPR.G17192 Trifolium pratense HOM05D004110 ORTHO05D004810 3.6e-38 162.2 146 54.1
AT4G38760 Arabidopsis thaliana HOM05D004110 ORTHO05D004810 4.7e-38 161.8 147 51.0
Haze_02194 Corylus avellana HOM05D004110 ORTHO05D004810 1.0e-37 160.6 178 47.2
Medtr4g075330 Medicago truncatula HOM05D004110 ORTHO05D004810 1.4e-37 160.2 146 53.4
Aqoxy2G01068 Aquilegia oxysepala HOM05D004110 ORTHO05D004810 8.8e-37 157.5 179 48.6
Lj3g0009405 Lotus japonicus HOM05D004110 ORTHO05D004810 8.8e-37 157.5 147 53.1
Sabra09G0099400 Salix brachista HOM05D004110 ORTHO05D004810 8.8e-37 157.5 154 50.6
C07p63600 Brassica napus HOM05D004110 ORTHO05D004810 1.1e-36 157.1 145 49.7
BolC7t46773H Brassica oleracea HOM05D004110 ORTHO05D004810 1.1e-36 157.1 145 49.7
Hund00042 Selenicereus undatus HOM05D004110 ORTHO05D004810 1.1e-36 157.1 152 48.7
AUR62013086 Chenopodium quinoa HOM05D004110 ORTHO05D004810 2.0e-36 156.4 147 49.0
BcaNung01969 Brassica carinata HOM05D004110 ORTHO05D004810 7.5e-36 154.5 145 49.0
Sp7g37050 Schrenkiella parvula HOM05D004110 ORTHO05D004810 7.5e-36 154.5 145 49.7
Aa31LG6G16440 Aethionema arabicum HOM05D004110 ORTHO05D004810 1.3e-35 153.7 157 47.1
Sc18g0006650 Simmondsia chinensis HOM05D004110 ORTHO05D004810 1.7e-35 153.3 152 48.0
A06p48910 Brassica napus HOM05D004110 ORTHO05D004810 2.2e-35 152.9 145 48.3
BraA06t27759Z Brassica rapa HOM05D004110 ORTHO05D004810 2.8e-35 152.5 145 48.3
MD10G1119100 Malus domestica HOM05D004110 ORTHO05D004810 4.1e-34 148.7 132 54.5
Cpa.g.sc37.188 Carica papaya HOM05D004110 ORTHO05D004810 1.2e-33 147.1 143 49.7
Ah.01g022610 Amaranthus hybridus HOM05D004110 ORTHO05D004810 3.5e-33 145.6 148 44.6
CSS0008861 Camellia sinensis var. sinensis HOM05D004110 ORTHO05D004810 3.5e-33 145.6 142 52.8
HPP92_005008 Vanilla planifolia HOM05D004110 ORTHO05D004810 1.0e-32 144.1 161 43.5
ATR0810G267 Amborella trichopoda HOM05D004110 ORTHO05D004810 5.5e-31 138.3 163 42.9
SGA_v2.0_scaffold58G20427 Striga asiatica HOM05D004110 ORTHO05D004810 3.6e-30 135.6 161 44.1
unitig_21.g20818 Utricularia gibba HOM05D004110 ORTHO05D004810 8.0e-30 134.4 126 54.8
COL.COLO4_17260 Corchorus olitorius HOM05D004110 ORTHO05D004810 1.2e-28 130.6 109 56.9
ClCG02G011550 Citrullus lanatus HOM05D004110 ORTHO05D004810 8.3e-27 124.4 148 48.0
Gohir.D12G033200 Gossypium hirsutum HOM05D004110 ORTHO05D004810 3.1e-26 122.5 148 43.9
Hma1.2p1_0032F.1_g019640 Hydrangea macrophylla HOM05D004110 ORTHO05D004810 1.2e-25 120.6 107 59.8
SEGI_22139 Sequoiadendron giganteum HOM05D004110 ORTHO05D004810 1.3e-24 117.1 161 41.0
Gohir.A12G039250 Gossypium hirsutum HOM05D004110 ORTHO05D004810 6.5e-24 114.8 113 50.4
Pp3c5_12360 Physcomitrium patens HOM05D004110 ORTHO05D004810 8.8e-21 104.4 165 34.5
arahy.Tifrunner.gnm1.ann1.G8A5JV Arachis hypogaea HOM05D004110 ORTHO05D004810 3.4e-20 102.4 88 52.3
Zm00001eb026660 Zea mays HOM05D004110 ORTHO05D004810 4.4e-20 102.1 125 42.4
Os10g0154566 Oryza sativa ssp. japonica HOM05D004110 ORTHO05D004810 9.2e-18 94.4 112 45.5
CBR_g5647 Chara braunii HOM05D004110 ORTHO05D004810 2.0e-17 93.2 178 34.3
AagrBONN_evm.TU.Sc2ySwM_344.4164 Anthoceros agrestis HOM05D004110 ORTHO05D004810 7.7e-17 91.3 177 31.1
CDE05G0764 Ceratophyllum demersum HOM05D004110 ORTHO05D004810 1.0e-16 90.9 119 37.0
SHI05691 Sapria himalayana HOM05D004110 ORTHO05D004810 1.9e-15 86.7 97 42.3
AagrBONN_evm.TU.Sc2ySwM_344.4149 Anthoceros agrestis HOM05D004110 ORTHO05D004810 2.0e-12 76.6 141 30.5
Mapoly0001s0208 Marchantia polymorpha HOM05D004110 ORTHO05D004810 7.5e-12 74.7 180 26.7
arahy.Tifrunner.gnm1.ann1.9L03M9 Arachis hypogaea HOM05D004110 ORTHO05D004810 3.3e-07 59.3 45 53.3
Peaxi162Scf00684g00023 Petunia axillaris HOM05D004110 ORTHO05D004810 7.3e-07 58.2 141 36.9
Duzib248G0615 Durio zibethinus HOM05D004110 ORTHO05D004810 1.6e-06 57.0 62 41.9


User provided reference genes

Program Settings