Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g039360.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 7.0e-110 400.6 198 100.0
Peaxi162Scf00456g00035 Petunia axillaris HOM05D003430 ORTHO05D004809 3.7e-58 228.8 122 89.3
Sopen00g002720 Solanum pennellii HOM05D003430 ORTHO05D004809 3.7e-58 228.8 122 89.3
Sopen11g022460 Solanum pennellii HOM05D000004 ORTHO05D000002 6.3e-58 228.0 113 95.6
Peaxi162Scf00456g00037 Petunia axillaris HOM05D003430 ORTHO05D004809 8.2e-58 227.6 112 96.4
Solyc00g500224.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 8.2e-58 227.6 112 96.4
Solyc00g500241.1 Solanum lycopersicum HOM05D003430 ORTHO05D004809 8.2e-58 227.6 112 96.4
Nitab4.5_0010559g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 3.4e-56 222.2 122 86.9
RhsimMtG0004400 Rhododendron simsii HOM05D003430 ORTHO05D004809 1.1e-54 217.2 115 88.7
Lj2C1222G64 Lonicera japonica HOM05D003430 ORTHO05D004809 1.4e-54 216.9 122 84.4
PGSC0003DMG400037371 Solanum tuberosum HOM05D003430 ORTHO05D004809 1.9e-54 216.5 122 84.4
Nn1g10089 Nelumbo nucifera HOM05D003430 ORTHO05D004809 4.2e-54 215.3 122 83.6
Dinv06724 Davidia involucrata HOM05D003430 ORTHO05D004809 2.7e-53 212.6 112 91.1
Nn2g14911 Nelumbo nucifera HOM05D003430 ORTHO05D004809 3.5e-53 212.2 122 82.0
Hma1.2p1_1286F.1_g273040 Hydrangea macrophylla HOM05D003430 ORTHO05D004809 6.1e-53 211.5 123 83.7
SabraMtG0000400 Salix brachista HOM05D003430 ORTHO05D004809 1.0e-52 210.7 115 85.2
CAN.G600.1 Capsicum annuum HOM05D003430 ORTHO05D004809 9.7e-51 204.1 111 87.4
Nitab4.5_0003945g0010 Nicotiana tabacum HOM05D003430 ORTHO05D004809 9.7e-51 204.1 112 88.4
HanXRQMTg0579531 Helianthus annuus HOM05D003430 ORTHO05D004809 1.3e-50 203.8 112 87.5
Ah.10g028080 Amaranthus hybridus HOM05D003430 ORTHO05D004809 2.2e-50 203.0 200 57.0
ECA039G0023 Erigeron canadensis HOM05D003430 ORTHO05D004809 2.2e-50 203.0 113 87.6
Nitab4.5_0004256g0030 Nicotiana tabacum HOM05D003430 ORTHO05D004809 2.2e-50 203.0 112 88.4
arahy.Tifrunner.gnm1.ann1.41QMJ9 Arachis hypogaea HOM05D003430 ORTHO05D004809 6.3e-50 201.4 124 79.0
arahy.Tifrunner.gnm1.ann1.ABQ8F7 Arachis hypogaea HOM05D003430 ORTHO05D004809 6.3e-50 201.4 124 79.0
arahy.Tifrunner.gnm1.ann1.AJMC4E Arachis hypogaea HOM05D003430 ORTHO05D004809 6.3e-50 201.4 124 79.0
arahy.Tifrunner.gnm1.ann1.CY2VCK Arachis hypogaea HOM05D003430 ORTHO05D004809 6.3e-50 201.4 124 79.0
Medtr0082s0260 Medicago truncatula HOM05D003430 ORTHO05D004809 1.4e-49 200.3 128 77.3
Psat3g040120 Pisum sativum HOM05D003430 ORTHO05D004809 1.4e-49 200.3 124 79.8
VMungo0044G0002 Vigna mungo HOM05D003430 ORTHO05D004809 1.8e-49 199.9 124 79.8
CDE02G0363 Ceratophyllum demersum HOM05D003430 ORTHO05D004809 2.4e-49 199.5 122 77.9
Ah.01g011780 Amaranthus hybridus HOM05D003430 ORTHO05D004809 3.1e-49 199.1 128 75.8
COL.COLO4_04428 Corchorus olitorius HOM05D003430 ORTHO05D004809 9.0e-49 197.6 133 76.7
COL.COLO4_04429 Corchorus olitorius HOM05D003430 ORTHO05D004809 9.0e-49 197.6 133 76.7
Medtr0024s0140 Medicago truncatula HOM05D003430 ORTHO05D004809 9.0e-49 197.6 124 79.0
BcaC05g27378 Brassica carinata HOM05D003430 ORTHO05D004809 1.2e-48 197.2 126 77.8
BolSC28t60411H Brassica oleracea HOM05D003430 ORTHO05D004809 1.2e-48 197.2 126 77.8
Sp3g25650 Schrenkiella parvula HOM05D003430 ORTHO05D004809 1.2e-48 197.2 126 77.8
Sc11g0004420 Simmondsia chinensis HOM05D003430 ORTHO05D004809 1.2e-48 197.2 122 77.9
Aa31csc1081G20 Aethionema arabicum HOM05D003430 ORTHO05D004809 2.6e-48 196.1 119 81.5
AUR62042332 Chenopodium quinoa HOM05D003430 ORTHO05D004809 2.6e-48 196.1 121 78.5
Lsat_1_v5_gn_6_109000 Lactuca sativa HOM05D003430 ORTHO05D004809 2.6e-48 196.1 133 73.7
SalBow1G3892 Salvia bowleyana HOM05D003430 ORTHO05D004809 5.9e-48 194.9 122 79.5
SGA_v2.0_scaffold245G44667 Striga asiatica HOM05D003430 ORTHO05D004809 5.9e-48 194.9 115 83.5
arahy.Tifrunner.gnm1.ann1.087TPC Arachis hypogaea HOM05D003430 ORTHO05D004809 3.6e-45 185.7 124 74.2
Nitab4.5_0001127g0210 Nicotiana tabacum HOM05D003430 ORTHO05D004809 4.6e-45 185.3 136 71.3
SHI50824 Sapria himalayana HOM05D003430 ORTHO05D004809 3.0e-44 182.6 125 74.4
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 3.9e-44 182.2 103 85.4
unitig_87.g27925 Utricularia gibba HOM05D003430 ORTHO05D004809 6.7e-44 181.4 122 76.2
Lalb_Chr00c39g0409071 Lupinus albus HOM05D003430 ORTHO05D004809 7.4e-43 177.9 106 82.1
Lalb_Chr00c39g0409251 Lupinus albus HOM05D003430 ORTHO05D004809 7.4e-43 177.9 106 82.1
Lalb_Chr00c51g0413171 Lupinus albus HOM05D003430 ORTHO05D004809 7.4e-43 177.9 106 82.1
Lalb_Chr10g0094601 Lupinus albus HOM05D003430 ORTHO05D004809 7.4e-43 177.9 106 82.1
Zm00001eb435500 Zea mays HOM05D003430 ORTHO05D004809 3.7e-42 175.6 104 77.9
Zm00001eb436090 Zea mays HOM05D003430 ORTHO05D004809 3.7e-42 175.6 104 77.9
Zm00001eb437350 Zea mays HOM05D003430 ORTHO05D004809 3.7e-42 175.6 104 77.9
Zm00001eb440330 Zea mays HOM05D003430 ORTHO05D004809 3.7e-42 175.6 104 77.9
Zm00001eb440360 Zea mays HOM05D003430 ORTHO05D004809 3.7e-42 175.6 104 77.9
Zm00001eb442170 Zea mays HOM05D003430 ORTHO05D004809 3.7e-42 175.6 104 77.9
Solyc00g052430.2 Solanum lycopersicum HOM05D003430 ORTHO05D004809 6.3e-42 174.9 84 97.6
BolC1t03461H Brassica oleracea HOM05D003430 ORTHO05D004809 1.8e-41 173.3 116 74.1
SHI29634 Sapria himalayana HOM05D003430 ORTHO05D004809 2.4e-41 172.9 110 78.2
SHI42478 Sapria himalayana HOM05D003430 ORTHO05D004809 1.2e-40 170.6 121 72.7
Solyc00g047180.1 Solanum lycopersicum HOM05D003430 ORTHO05D030260 1.7e-39 166.8 86 98.8
HanXRQChr09g0250621 Helianthus annuus HOM05D003430 ORTHO05D004809 2.2e-39 166.4 93 84.9
Cfa023013 Carpinus fangiana HOM05D003430 ORTHO05D004809 4.2e-38 162.2 84 90.5
DCAR_032431 Daucus carota HOM05D003430 ORTHO05D004809 7.9e-37 157.9 84 89.3
CANSAT16G0003 Cannabis sativa HOM05D003430 ORTHO05D004809 1.0e-36 157.5 84 88.1
Lj2C1231G44 Lonicera japonica HOM05D003430 ORTHO05D004809 2.3e-36 156.4 91 82.4
Gorai.001G162300 Gossypium raimondii HOM05D003430 ORTHO05D004809 3.0e-36 156.0 89 85.4
Thhalv10002931m.g Eutrema salsugineum HOM05D003430 ORTHO05D004809 1.1e-35 154.1 95 78.9
Nitab4.5_0000172g0240 Nicotiana tabacum HOM05D003430 ORTHO05D004809 1.1e-35 154.1 94 78.7
HanXRQChr00c0055g0571401 Helianthus annuus HOM05D003430 ORTHO05D004809 2.8e-34 149.4 83 85.5
TPR.G13784 Trifolium pratense HOM05D003430 ORTHO05D004809 3.7e-34 149.1 86 84.9
Peaxi162Scf00855g00217 Petunia axillaris HOM05D003430 ORTHO05D030260 1.4e-33 147.1 85 91.8
arahy.Tifrunner.gnm1.ann1.J6HUIG Arachis hypogaea HOM05D003430 ORTHO05D026951 1.8e-33 146.7 93 78.5
Lalb_Chr00c21g0406111 Lupinus albus HOM05D003430 ORTHO05D004809 1.8e-33 146.7 86 83.7
ATMG00180 Arabidopsis thaliana HOM05D003430 ORTHO05D004809 2.0e-32 143.3 88 80.7
A04p09460 Brassica napus HOM05D003430 ORTHO05D004809 2.0e-32 143.3 88 80.7
BraSC177t45748Z Brassica rapa HOM05D003430 ORTHO05D004809 2.0e-32 143.3 88 80.7
CARHR282710 Cardamine hirsuta HOM05D003430 ORTHO05D004809 2.0e-32 143.3 88 80.7
CARHR288640 Cardamine hirsuta HOM05D003430 ORTHO05D004809 2.0e-32 143.3 88 80.7
RcHm_v2.0_MTg0498431 Rosa chinensis HOM05D003430 ORTHO05D004809 3.5e-32 142.5 84 83.3
SHI31749 Sapria himalayana HOM05D003430 ORTHO05D004809 2.1e-29 133.3 91 71.4
Nitab4.5_0001152g0350 Nicotiana tabacum HOM05D003430 ORTHO05D004809 5.9e-24 115.2 59 91.5
Nitab4.5_0000172g1130 Nicotiana tabacum HOM05D003430 ORTHO05D004809 7.7e-24 114.8 117 58.1
Nitab4.5_0000120g0130 Nicotiana tabacum HOM05D003430 ORTHO05D030260 1.3e-23 114.0 68 85.3
HanXRQChr11g0335401 Helianthus annuus HOM05D003430 ORTHO05D004809 2.3e-20 103.2 59 83.1
HPP92_026915 Vanilla planifolia HOM05D003430 ORTHO05D004809 2.8e-18 96.3 64 70.3
Gorai.002G142200 Gossypium raimondii HOM05D003430 ORTHO05D004809 4.8e-18 95.5 98 56.1
SHI04803 Sapria himalayana HOM05D003430 ORTHO05D004809 2.4e-17 93.2 92 55.4
SHI04802 Sapria himalayana HOM05D003430 ORTHO05D004809 3.1e-17 92.8 81 59.3
Nitab4.5_0004300g0160 Nicotiana tabacum HOM05D003430 ORTHO05D030260 2.9e-15 86.3 47 89.4
Gohir.D01G116901 Gossypium hirsutum HOM05D003430 ORTHO05D004809 3.8e-15 85.9 51 82.4
SHI25674 Sapria himalayana HOM05D003430 ORTHO05D004809 5.0e-15 85.5 73 56.2
SHI20517 Sapria himalayana HOM05D003430 ORTHO05D004809 2.7e-13 79.7 81 58.0
LjContig00439g0009782 Lotus japonicus HOM05D003430 ORTHO05D004809 1.3e-10 70.9 37 89.2
LjContig00446g0005008 Lotus japonicus HOM05D003430 ORTHO05D004809 1.3e-10 70.9 37 89.2
BraSC48t46245Z Brassica rapa HOM05D003430 ORTHO05D004809 3.1e-09 66.2 32 93.8
BraSC54t46373Z Brassica rapa HOM05D003430 ORTHO05D004809 3.1e-09 66.2 32 93.8
BraSC77t46628Z Brassica rapa HOM05D003430 ORTHO05D004809 3.1e-09 66.2 32 93.8


User provided reference genes

Program Settings