Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g033288.1 Solanum lycopersicum HOM05D002468 ORTHO05D005371 4.7e-247 857.4 438 100.0
Sopen11g017140 Solanum pennellii HOM05D002468 ORTHO05D005371 1.0e-246 856.3 438 99.8
PGSC0003DMG402028027 Solanum tuberosum HOM05D002468 ORTHO05D005371 3.4e-242 841.3 439 98.2
CAN.G624.1 Capsicum annuum HOM05D002468 ORTHO05D005371 3.7e-220 768.1 442 88.9
Peaxi162Scf00842g00319 Petunia axillaris HOM05D002468 ORTHO05D005371 1.8e-219 765.8 442 89.4
MSTRG.449 Avicennia marina HOM05D002468 ORTHO05D005371 9.8e-205 716.8 444 83.8
Ciclev10004979m.g Citrus clementina HOM05D002468 ORTHO05D005371 1.3e-204 716.5 441 83.2
Sabra03G0117600 Salix brachista HOM05D002468 ORTHO05D005371 2.4e-203 712.2 440 84.5
MD16G1141700 Malus domestica HOM05D002468 ORTHO05D005371 4.1e-203 711.4 441 83.2
Oeu010257.1 Olea europaea HOM05D002468 ORTHO05D005371 3.5e-202 708.4 442 83.5
CSS0030444 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 4.6e-202 708.0 440 82.7
CSS0032961 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 4.6e-202 708.0 440 82.7
FAN07G2580 Fragaria x ananassa HOM05D002468 ORTHO05D005371 1.3e-201 706.4 444 82.2
FvH4_4g22560 Fragaria vesca HOM05D002468 ORTHO05D005371 2.3e-201 705.7 444 82.4
MD13G1131400 Malus domestica HOM05D002468 ORTHO05D005371 2.3e-201 705.7 443 83.3
Potri.001G068200 Populus trichocarpa HOM05D002468 ORTHO05D005371 5.0e-201 704.5 439 83.4
Cc11_g14960 Coffea canephora HOM05D002468 ORTHO05D005371 8.6e-201 703.7 445 82.5
TWI18G0725 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 1.1e-200 703.4 447 82.3
Thecc.02G191400 Theobroma cacao HOM05D002468 ORTHO05D005371 1.5e-200 703.0 443 83.3
Dinv03336 Davidia involucrata HOM05D002468 ORTHO05D005371 1.9e-200 702.6 440 81.6
RcHm_v2.0_Chr4g0428801 Rosa chinensis HOM05D002468 ORTHO05D005371 4.3e-200 701.4 443 81.7
MSTRG.8058 Avicennia marina HOM05D002468 ORTHO05D005371 5.6e-200 701.0 444 81.8
TWI36G1422 Tripterygium wilfordii HOM05D002468 ORTHO05D005371 7.3e-200 700.7 445 81.8
Dinv17539 Davidia involucrata HOM05D002468 ORTHO05D005371 2.8e-199 698.7 440 81.6
FAN12G2192 Fragaria x ananassa HOM05D002468 ORTHO05D005371 4.7e-199 698.0 438 82.6
FAN17G0051 Fragaria x ananassa HOM05D002468 ORTHO05D005371 4.7e-199 698.0 442 81.7
Actinidia30583 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.8e-198 696.0 442 82.6
Atru.chr12.1428 Acer truncatum HOM05D002468 ORTHO05D005371 2.3e-198 695.7 443 81.3
CANSAT01G0579 Cannabis sativa HOM05D002468 ORTHO05D005371 3.1e-198 695.3 443 81.9
HanXRQChr17g0540381 Helianthus annuus HOM05D002468 ORTHO05D005371 3.1e-198 695.3 399 87.5
GSVIVG01001098001 Vitis vinifera HOM05D002468 ORTHO05D005371 4.0e-198 694.9 443 81.9
Rhsim12G0017100 Rhododendron simsii HOM05D002468 ORTHO05D005371 5.2e-198 694.5 440 81.8
Prupe.1G214200 Prunus persica HOM05D002468 ORTHO05D005371 6.8e-198 694.1 442 81.2
CiPaw.06G109900 Carya illinoinensis HOM05D002468 ORTHO05D005371 1.2e-197 693.3 441 82.5
Manes.09G188600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.2e-197 693.3 441 82.3
Duzib132G1053 Durio zibethinus HOM05D002468 ORTHO05D005371 1.5e-197 693.0 443 81.9
ECA246G0169 Erigeron canadensis HOM05D002468 ORTHO05D005371 1.5e-197 693.0 438 82.4
Manes.08G100600 Manihot esculenta HOM05D002468 ORTHO05D005371 1.5e-197 693.0 443 81.3
TAR629G1443 Trochodendron aralioides HOM05D002468 ORTHO05D005371 3.4e-197 691.8 440 81.8
QL03p049039 Quercus lobata HOM05D002468 ORTHO05D005371 5.8e-197 691.0 440 80.9
Nitab4.5_0004349g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 9.8e-197 690.3 440 83.0
Lsat_1_v5_gn_3_32661 Lactuca sativa HOM05D002468 ORTHO05D005371 1.3e-196 689.9 398 86.9
Duzib052G0101 Durio zibethinus HOM05D002468 ORTHO05D005371 1.7e-196 689.5 443 81.5
Gohir.A04G101700 Gossypium hirsutum HOM05D002468 ORTHO05D005371 1.7e-196 689.5 440 82.5
Gohir.D04G140900 Gossypium hirsutum HOM05D002468 ORTHO05D005371 2.9e-196 688.7 440 82.5
Cpa.g.sc38.67 Carica papaya HOM05D002468 ORTHO05D005371 3.7e-196 688.3 445 80.9
CiPaw.05G100700 Carya illinoinensis HOM05D002468 ORTHO05D005371 3.7e-196 688.3 440 80.5
Gorai.012G125900 Gossypium raimondii HOM05D002468 ORTHO05D005371 3.7e-196 688.3 440 82.3
Aqoxy5G03074 Aquilegia oxysepala HOM05D002468 ORTHO05D005371 6.4e-196 687.6 436 82.1
SalBow2G0960 Salvia bowleyana HOM05D002468 ORTHO05D005371 6.4e-196 687.6 445 82.2
Sc11g0000080 Simmondsia chinensis HOM05D002468 ORTHO05D005371 3.2e-195 685.3 437 80.3
vmacro01017 Vaccinium macrocarpon HOM05D002468 ORTHO05D005371 3.2e-195 685.3 439 80.6
Eucgr.G01978 Eucalyptus grandis HOM05D002468 ORTHO05D005371 4.1e-195 684.9 443 81.3
DCAR_024636 Daucus carota HOM05D002468 ORTHO05D005371 5.4e-195 684.5 443 81.7
TAR371G0123 Trochodendron aralioides HOM05D002468 ORTHO05D005371 1.2e-194 683.3 418 84.0
arahy.Tifrunner.gnm1.ann1.PCZ0HW Arachis hypogaea HOM05D002468 ORTHO05D005371 2.1e-194 682.6 438 80.4
arahy.Tifrunner.gnm1.ann1.S6Z2J3 Arachis hypogaea HOM05D002468 ORTHO05D005371 2.1e-194 682.6 438 80.4
CsaV3_4G002210 Cucumis sativus L. HOM05D002468 ORTHO05D005371 2.7e-194 682.2 440 80.2
Migut.K01049 Erythranthe guttata HOM05D002468 ORTHO05D005371 2.7e-194 682.2 444 81.3
THA.LOC104807252 Tarenaya hassleriana HOM05D002468 ORTHO05D005371 3.5e-194 681.8 440 80.5
PGR119G1329 Punica granatum HOM05D002468 ORTHO05D005371 6.0e-194 681.0 444 79.7
Medtr7g006560 Medicago truncatula HOM05D002468 ORTHO05D005371 1.0e-193 680.2 438 80.6
ClCG07G011940 Citrullus lanatus HOM05D002468 ORTHO05D005371 1.3e-193 679.9 440 80.0
EL10Ac6g13612 Beta vulgaris HOM05D002468 ORTHO05D005371 2.3e-193 679.1 437 79.6
Lj1g0025256 Lotus japonicus HOM05D002468 ORTHO05D005371 5.1e-193 677.9 442 80.1
Cfa009455 Carpinus fangiana HOM05D002468 ORTHO05D005371 1.1e-192 676.8 443 79.9
Glyma.08G362900 Glycine max HOM05D002468 ORTHO05D005371 1.5e-192 676.4 439 80.6
HanXRQChr06g0175161 Helianthus annuus HOM05D002468 ORTHO05D005371 2.5e-192 675.6 399 85.0
TPR.G9718 Trifolium pratense HOM05D002468 ORTHO05D005371 4.3e-192 674.9 442 80.3
Ca_04094_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 1.6e-191 672.9 439 80.2
MELO3C017817.2 Cucumis melo HOM05D002468 ORTHO05D005371 2.1e-191 672.5 440 79.5
Phvul.008G003600 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 3.6e-191 671.8 443 79.7
Hund14581 Selenicereus undatus HOM05D002468 ORTHO05D005371 3.6e-191 671.8 441 78.5
Sed0000476 Sechium edule HOM05D002468 ORTHO05D005371 4.7e-191 671.4 437 79.2
VMungo1383G1406 Vigna mungo HOM05D002468 ORTHO05D005371 4.7e-191 671.4 443 79.7
Glyma.18G299100 Glycine max HOM05D002468 ORTHO05D005371 8.1e-191 670.6 439 80.0
SGA_v2.0_scaffold258G45768 Striga asiatica HOM05D002468 ORTHO05D005371 1.4e-190 669.8 448 79.5
PSO017G4233 Papaver somniferum HOM05D002468 ORTHO05D005371 4.0e-190 668.3 438 79.9
Ah.03g135540 Amaranthus hybridus HOM05D002468 ORTHO05D005371 1.2e-189 666.8 441 77.6
Psat3g207000 Pisum sativum HOM05D002468 ORTHO05D005371 3.4e-189 665.2 438 80.1
AUR62005716 Chenopodium quinoa HOM05D002468 ORTHO05D005371 7.5e-189 664.1 396 84.3
Thhalv10013572m.g Eutrema salsugineum HOM05D002468 ORTHO05D005371 1.3e-188 663.3 440 78.4
Nitab4.5_0002569g0040 Nicotiana tabacum HOM05D002468 ORTHO05D005371 1.3e-188 663.3 444 80.0
PSO478G3355 Papaver somniferum HOM05D002468 ORTHO05D005371 1.3e-188 663.3 439 79.0
AUR62028839 Chenopodium quinoa HOM05D002468 ORTHO05D005371 1.7e-188 662.9 396 84.1
BraA10t44546Z Brassica rapa HOM05D002468 ORTHO05D005371 4.9e-188 661.4 440 79.5
A10p24820 Brassica napus HOM05D002468 ORTHO05D005371 1.4e-187 659.8 441 79.4
Carub.0006s1158 Capsella rubella HOM05D002468 ORTHO05D005371 4.1e-187 658.3 442 78.5
Lalb_Chr04g0257301 Lupinus albus HOM05D002468 ORTHO05D005371 5.4e-187 657.9 439 78.6
C09p63670 Brassica napus HOM05D002468 ORTHO05D005371 1.6e-186 656.4 441 78.7
BolC9t59208H Brassica oleracea HOM05D002468 ORTHO05D005371 1.6e-186 656.4 441 78.7
MBI07_g35982_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 4.6e-186 654.8 438 78.5
Sed0003563 Sechium edule HOM05D002468 ORTHO05D005371 6.0e-186 654.4 436 78.4
Sp6g30600 Schrenkiella parvula HOM05D002468 ORTHO05D005371 1.3e-185 653.3 416 81.5
unitig_8.g2893 Utricularia gibba HOM05D002468 ORTHO05D005371 1.3e-185 653.3 401 82.5
C03p07000 Brassica napus HOM05D002468 ORTHO05D005371 1.7e-185 652.9 438 78.3
BolC3t13199H Brassica oleracea HOM05D002468 ORTHO05D005371 1.7e-185 652.9 438 78.3
AL6G24040 Arabidopsis lyrata HOM05D002468 ORTHO05D005371 5.1e-185 651.4 437 78.0
AT5G13420 Arabidopsis thaliana HOM05D002468 ORTHO05D005371 1.1e-184 650.2 440 78.0
BcaC04g19118 Brassica carinata HOM05D002468 ORTHO05D005371 1.5e-184 649.8 417 80.6
C02p06130 Brassica napus HOM05D002468 ORTHO05D005371 3.3e-184 648.7 417 80.1
BolC2t06554H Brassica oleracea HOM05D002468 ORTHO05D005371 3.3e-184 648.7 417 80.1
CARHR200010 Cardamine hirsuta HOM05D002468 ORTHO05D005371 5.6e-184 647.9 436 77.1
A03p05960 Brassica napus HOM05D002468 ORTHO05D005371 8.1e-183 644.0 437 77.6
HanXRQChr06g0175171 Helianthus annuus HOM05D002468 ORTHO05D005371 2.4e-182 642.5 386 82.6
BraA03t09933Z Brassica rapa HOM05D002468 ORTHO05D005371 3.1e-182 642.1 437 77.1
A02p01910 Brassica napus HOM05D002468 ORTHO05D005371 2.0e-181 639.4 416 79.6
BraA02t05164Z Brassica rapa HOM05D002468 ORTHO05D005371 2.0e-181 639.4 416 79.6
Haze_12509 Corylus avellana HOM05D002468 ORTHO05D005371 5.8e-181 637.9 415 79.0
Os01g0926300 Oryza sativa ssp. japonica HOM05D002468 ORTHO05D005371 9.9e-181 637.1 380 83.2
CDE05G3080 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 2.9e-180 635.6 398 80.4
CSS0032033 Camellia sinensis var. sinensis HOM05D002468 ORTHO05D005371 1.4e-179 633.3 388 83.2
HPP92_009801 Vanilla planifolia HOM05D002468 ORTHO05D005371 1.4e-179 633.3 421 77.2
MBI07_g48060_MAGBIO Magnolia biondii HOM05D002468 ORTHO05D005371 1.6e-178 629.8 481 70.7
Zm00001eb363880 Zea mays HOM05D002468 ORTHO05D005371 2.1e-178 629.4 419 75.9
CDE05G2158 Ceratophyllum demersum HOM05D002468 ORTHO05D005371 2.3e-177 625.9 423 76.1
Zm00001eb142730 Zea mays HOM05D002468 ORTHO05D005371 3.0e-177 625.5 383 81.5
ATR0582G307 Amborella trichopoda HOM05D002468 ORTHO05D005371 1.1e-174 617.1 380 82.1
Aa31LG3G14290 Aethionema arabicum HOM05D002468 ORTHO05D005371 4.9e-172 608.2 491 66.6
BcaB01g05361 Brassica carinata HOM05D002468 ORTHO05D005371 7.1e-171 604.4 438 74.2
Actinidia22113 Actinidia chinensis HOM05D002468 ORTHO05D005371 1.9e-168 596.3 383 81.7
Potri.003G161900 Populus trichocarpa HOM05D002468 ORTHO05D005371 2.1e-162 576.2 365 83.0
BcaNung01156 Brassica carinata HOM05D002468 ORTHO05D005371 2.7e-154 549.3 368 78.5
Lj6C840T10 Lonicera japonica HOM05D002468 ORTHO05D005371 4.3e-152 542.0 307 89.6
Lj4g0027400 Lotus japonicus HOM05D002468 ORTHO05D005371 3.7e-151 538.9 382 69.6
AagrBONN_evm.TU.Sc2ySwM_228.2334 Anthoceros agrestis HOM05D002468 ORTHO05D005371 2.4e-150 536.2 394 69.3
Lalb_Chr10g0091121 Lupinus albus HOM05D002468 ORTHO05D005371 7.6e-149 531.2 358 77.7
Lalb_Chr13g0296941 Lupinus albus HOM05D002468 ORTHO05D005371 1.0e-148 530.8 410 64.1
Glyma.05G199800 Glycine max HOM05D002468 ORTHO05D005371 9.3e-147 524.2 365 69.6
Phvul.002G281000 Phaseolus vulgaris HOM05D002468 ORTHO05D005371 1.1e-144 517.3 364 69.2
VMungo0251G2964 Vigna mungo HOM05D002468 ORTHO05D001247 1.4e-142 510.4 364 67.0
Mapoly0092s0071 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.8e-142 510.0 436 62.4
Ca_16823_v3 Cicer arietinum L. HOM05D002468 ORTHO05D005371 3.4e-141 505.8 376 66.0
SMO367G1271 Selaginella moellendorffii HOM05D002468 ORTHO05D005371 4.5e-141 505.4 361 70.9
Medtr8g096130 Medicago truncatula HOM05D002468 ORTHO05D005371 5.9e-141 505.0 390 66.7
Mapoly0092s0072 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.7e-140 503.4 377 67.4
Mapoly0092s0073 Marchantia polymorpha HOM05D002468 ORTHO05D005371 2.2e-140 503.1 377 67.4
TPR.G12900 Trifolium pratense HOM05D002468 ORTHO05D005371 2.9e-140 502.7 396 66.7
Pp3c26_4790 Physcomitrium patens HOM05D002468 ORTHO05D005371 3.9e-137 492.3 404 62.9
ClCG06G013000 Citrullus lanatus HOM05D002468 ORTHO05D005371 6.3e-135 485.0 396 60.4
MELO3C017506.2 Cucumis melo HOM05D002468 ORTHO05D005371 5.5e-131 471.9 396 59.6
Cpa.g.sc2215.1 Carica papaya HOM05D002468 ORTHO05D005371 2.1e-130 469.9 360 64.4
SHI04110 Sapria himalayana HOM05D002468 ORTHO05D005371 3.6e-130 469.2 317 77.3
CBR_g51451 Chara braunii HOM05D002468 ORTHO05D005371 1.9e-115 420.2 365 60.8
arahy.Tifrunner.gnm1.ann1.93S04R Arachis hypogaea HOM05D002468 ORTHO05D005371 3.0e-97 359.8 366 54.4
Eucgr.H00650 Eucalyptus grandis HOM05D002468 ORTHO05D005371 5.9e-93 345.5 302 61.9
Lj2g0022028 Lotus japonicus HOM05D002468 ORTHO05D005371 1.5e-83 314.3 225 72.4
BolC3t13348H Brassica oleracea HOM05D002468 ORTHO05D005371 7.8e-69 265.4 186 76.9
Mapoly0189s0003 Marchantia polymorpha HOM05D002468 ORTHO05D005371 1.0e-68 265.0 328 44.2
C03p08440 Brassica napus HOM05D002468 ORTHO05D005371 1.5e-59 234.6 139 86.3
HanXRQChr10g0304361 Helianthus annuus HOM05D002468 ORTHO05D005371 7.3e-59 232.3 123 88.6
arahy.Tifrunner.gnm1.ann1.1XR5VC Arachis hypogaea HOM05D002468 ORTHO05D005371 6.9e-57 225.7 199 58.8
Glyma.15G205533 Glycine max HOM05D002468 ORTHO05D005371 1.5e-56 224.6 154 72.7
CsaV3_1G031170 Cucumis sativus L. HOM05D002468 ORTHO05D005371 2.9e-39 167.2 162 54.3
Glyma.08G007300 Glycine max HOM05D002468 ORTHO05D005371 4.6e-37 159.8 119 68.9
BcaB01g05316 Brassica carinata HOM05D000877 ORTHO05D012137 4.3e-35 153.3 111 74.8
BolC3t13237H Brassica oleracea HOM05D000877 ORTHO05D012137 3.4e-32 143.7 81 87.7
Lalb_Chr10g0091111 Lupinus albus HOM05D002468 ORTHO05D005371 6.5e-31 139.4 82 85.4
CsaV3_1G031160 Cucumis sativus L. HOM05D002468 ORTHO05D005371 5.1e-28 129.8 80 72.5
SGA_v2.0_scaffold4G02418 Striga asiatica HOM05D002468 ORTHO05D051394 5.1e-28 129.8 100 62.0
SEGI_31132 Sequoiadendron giganteum HOM05D002468 ORTHO05D005371 3.9e-20 103.6 74 63.5
SGA_v2.0_scaffold528G52739 Striga asiatica HOM05D002468 ORTHO05D051394 3.7e-18 97.1 51 84.3
Pp3c3_15390 Physcomitrium patens HOM05D002468 ORTHO05D005371 3.4e-16 90.5 94 51.1
vmacro08874 Vaccinium macrocarpon HOM05D002468 ORTHO05D013153 1.0e-07 62.4 139 36.7


User provided reference genes

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