Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g033282.1 Solanum lycopersicum HOM05D005483 ORTHO05D006924 0.0e+00 2137.1 1117 100.0
Sopen11g017110 Solanum pennellii HOM05D005483 ORTHO05D006924 0.0e+00 2128.6 1117 99.5
Peaxi162Scf00842g00430 Petunia axillaris HOM05D005483 ORTHO05D006924 0.0e+00 1947.6 1121 90.2
Dinv17529 Davidia involucrata HOM05D005483 ORTHO05D006924 0.0e+00 1796.6 1131 81.0
Hma1.2p1_1494F.1_g286890 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 0.0e+00 1779.6 1124 80.3
Thecc.02G190700 Theobroma cacao HOM05D005483 ORTHO05D006924 0.0e+00 1771.1 1132 78.9
Cc11_g14910 Coffea canephora HOM05D005483 ORTHO05D006924 0.0e+00 1765.0 1134 79.4
Ciclev10004203m.g Citrus clementina HOM05D005483 ORTHO05D006924 0.0e+00 1762.7 1128 79.0
GSVIVG01001111001 Vitis vinifera HOM05D005483 ORTHO05D006924 0.0e+00 1758.8 1126 79.4
Actinidia30577 Actinidia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1749.9 1128 79.2
MSTRG.445 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1749.6 1130 77.7
CSS0020507 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1749.2 1141 78.8
Manes.08G100200 Manihot esculenta HOM05D005483 ORTHO05D006924 0.0e+00 1748.0 1126 78.6
Gohir.A01G020200 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1742.2 1136 77.6
Migut.K01044 Erythranthe guttata HOM05D005483 ORTHO05D006924 0.0e+00 1740.7 1135 77.9
TWI18G1022 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1738.4 1130 78.1
Gorai.002G021000 Gossypium raimondii HOM05D005483 ORTHO05D006924 0.0e+00 1737.2 1137 77.2
Gohir.D01G018800 Gossypium hirsutum HOM05D005483 ORTHO05D006924 0.0e+00 1732.2 1138 77.2
SalBow2G2141 Salvia bowleyana HOM05D005483 ORTHO05D006924 0.0e+00 1728.8 1134 78.3
Duzib052G0599 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1727.6 1129 77.9
PGR119G2201 Punica granatum HOM05D005483 ORTHO05D006924 0.0e+00 1726.1 1135 77.7
HanXRQChr17g0540341 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1725.7 1131 76.7
Cpa.g.sc38.68 Carica papaya HOM05D005483 ORTHO05D006924 0.0e+00 1721.8 1128 77.4
MSTRG.8060 Avicennia marina HOM05D005483 ORTHO05D006924 0.0e+00 1721.1 1133 77.3
CANSAT01G1825 Cannabis sativa HOM05D005483 ORTHO05D006924 0.0e+00 1718.7 1127 77.6
Duzib248G1306 Durio zibethinus HOM05D005483 ORTHO05D006924 0.0e+00 1715.7 1138 76.4
FAN07G1779 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1711.8 1124 76.3
FvH4_4g22440 Fragaria vesca HOM05D005483 ORTHO05D006924 0.0e+00 1711.0 1124 76.3
Sed0020947 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1711.0 1128 76.6
RcHm_v2.0_Chr4g0428701 Rosa chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1710.7 1127 76.6
Prupe.1G213300 Prunus persica HOM05D005483 ORTHO05D006924 0.0e+00 1709.5 1124 76.7
MD16G1142500 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1708.3 1124 76.4
FAN12G1583 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1708.0 1124 76.2
QL03p048748 Quercus lobata HOM05D005483 ORTHO05D006924 0.0e+00 1706.4 1133 76.9
FAN17G2071 Fragaria x ananassa HOM05D005483 ORTHO05D006924 0.0e+00 1706.0 1124 76.0
TAR622G1101 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1704.1 1120 76.6
Haze_12514 Corylus avellana HOM05D005483 ORTHO05D006924 0.0e+00 1701.0 1127 77.4
CsaV3_4G002140 Cucumis sativus L. HOM05D005483 ORTHO05D006924 0.0e+00 1700.6 1131 76.0
MELO3C017824.2 Cucumis melo HOM05D005483 ORTHO05D006924 0.0e+00 1700.3 1132 76.0
Cfa009459 Carpinus fangiana HOM05D005483 ORTHO05D006924 0.0e+00 1696.8 1127 77.1
ECA246G4063 Erigeron canadensis HOM05D005483 ORTHO05D006924 0.0e+00 1696.4 1118 75.6
Lsat_1_v5_gn_3_32540 Lactuca sativa HOM05D005483 ORTHO05D006924 0.0e+00 1694.1 1126 76.6
TWI36G1286 Tripterygium wilfordii HOM05D005483 ORTHO05D006924 0.0e+00 1693.7 1130 76.3
Potri.003G161400 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1687.5 1125 76.4
Rhsim12G0016200 Rhododendron simsii HOM05D005483 ORTHO05D006924 0.0e+00 1684.5 1137 75.6
Potri.001G068900 Populus trichocarpa HOM05D005483 ORTHO05D006924 0.0e+00 1679.8 1119 76.8
vmacro01010 Vaccinium macrocarpon HOM05D005483 ORTHO05D006924 0.0e+00 1678.3 1135 75.6
Sabra03G0117300 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1674.8 1178 73.7
CiPaw.06G110300 Carya illinoinensis HOM05D005483 ORTHO05D006924 0.0e+00 1674.1 1136 76.2
HanXRQChr06g0175451 Helianthus annuus HOM05D005483 ORTHO05D006924 0.0e+00 1667.5 1128 74.9
SGA_v2.0_scaffold258G45771 Striga asiatica HOM05D005483 ORTHO05D006924 0.0e+00 1666.7 1138 75.2
ClCG07G012020 Citrullus lanatus HOM05D005483 ORTHO05D006924 0.0e+00 1663.3 1101 76.4
Nn4g22102 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1652.9 1126 74.5
Nn3g16247 Nelumbo nucifera HOM05D005483 ORTHO05D006924 0.0e+00 1639.8 1124 74.6
Sed0017746 Sechium edule HOM05D005483 ORTHO05D006924 0.0e+00 1630.2 1126 73.6
Sc11g0000050 Simmondsia chinensis HOM05D005483 ORTHO05D006924 0.0e+00 1622.8 1136 71.9
Aqoxy5G03055 Aquilegia oxysepala HOM05D005483 ORTHO05D006924 0.0e+00 1622.1 1130 72.9
MD13G1132200 Malus domestica HOM05D005483 ORTHO05D006924 0.0e+00 1617.4 1124 73.0
PSO017G1761 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1613.2 1122 73.5
PSO478G1749 Papaver somniferum HOM05D005483 ORTHO05D006924 0.0e+00 1604.0 1122 73.3
Aa31LG3G14260 Aethionema arabicum HOM05D005483 ORTHO05D006924 0.0e+00 1585.5 1138 70.3
THA.LOC104825454 Tarenaya hassleriana HOM05D005483 ORTHO05D006924 0.0e+00 1585.5 1129 70.9
Glyma.18G298700 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1583.5 1119 71.9
Glyma.08G363300 Glycine max HOM05D005483 ORTHO05D006924 0.0e+00 1580.8 1124 71.6
AUR62028835 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1579.3 1131 71.9
Phvul.008G003900 Phaseolus vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1575.5 1068 74.3
arahy.Tifrunner.gnm1.ann1.H63XD7 Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1568.5 1148 70.5
arahy.Tifrunner.gnm1.ann1.N4LA1V Arachis hypogaea HOM05D005483 ORTHO05D006924 0.0e+00 1568.5 1148 70.5
AT5G13390 Arabidopsis thaliana HOM05D005483 ORTHO05D006924 0.0e+00 1563.9 1136 69.5
Sp6g30630 Schrenkiella parvula HOM05D005483 ORTHO05D006924 0.0e+00 1561.6 1136 69.3
AL6G24010 Arabidopsis lyrata HOM05D005483 ORTHO05D006924 0.0e+00 1560.0 1136 69.4
Lj1g0002578 Lotus japonicus HOM05D005483 ORTHO05D006924 0.0e+00 1557.3 1128 70.7
EL10Ac2g02397 Beta vulgaris HOM05D005483 ORTHO05D006924 0.0e+00 1555.0 1120 70.4
Sabra01G0048200 Salix brachista HOM05D005483 ORTHO05D006924 0.0e+00 1554.7 1028 76.5
BcaNung01159 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1551.2 1127 69.0
Thhalv10012499m.g Eutrema salsugineum HOM05D005483 ORTHO05D006924 0.0e+00 1550.0 1136 68.9
Lalb_Chr10g0091131 Lupinus albus HOM05D005483 ORTHO05D006924 0.0e+00 1550.0 1121 70.7
Carub.0006s1155 Capsella rubella HOM05D005483 ORTHO05D006924 0.0e+00 1549.3 1136 69.1
COL.COLO4_08434 Corchorus olitorius HOM05D005483 ORTHO05D006924 0.0e+00 1548.5 1010 78.8
CARHR200040 Cardamine hirsuta HOM05D005483 ORTHO05D006924 0.0e+00 1545.8 1131 69.2
TPR.G9702 Trifolium pratense HOM05D005483 ORTHO05D006924 0.0e+00 1543.9 1138 69.2
BraA10t44547Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1542.7 1132 69.1
A10p24830 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1540.8 1132 69.0
BolC9t59209H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1538.5 1137 68.9
C09p63680 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1535.8 1137 69.0
Ah.03g135500 Amaranthus hybridus HOM05D005483 ORTHO05D006924 0.0e+00 1533.1 1093 71.4
BolC2t06551H Brassica oleracea HOM05D005483 ORTHO05D006924 0.0e+00 1529.6 1122 68.5
A02p01880 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1519.6 1123 67.9
BcaNung01880 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1518.1 1122 67.8
BraA02t05161Z Brassica rapa HOM05D005483 ORTHO05D006924 0.0e+00 1517.7 1123 67.9
C02p06100 Brassica napus HOM05D005483 ORTHO05D006924 0.0e+00 1513.0 1122 67.6
Ca_04087_v3 Cicer arietinum L. HOM05D005483 ORTHO05D006924 0.0e+00 1504.2 1078 70.8
VMungo1383G1684 Vigna mungo HOM05D005483 ORTHO05D006924 0.0e+00 1498.0 1071 71.8
Psat3g206760 Pisum sativum HOM05D005483 ORTHO05D006924 0.0e+00 1485.3 1033 72.3
Eucgr.G01983 Eucalyptus grandis HOM05D005483 ORTHO05D006924 0.0e+00 1479.9 922 80.4
Lj6C839G6 Lonicera japonica HOM05D005483 ORTHO05D006924 0.0e+00 1452.2 922 79.4
AUR62005722 Chenopodium quinoa HOM05D005483 ORTHO05D006924 0.0e+00 1440.6 1123 67.1
Medtr7g006760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1421.8 1122 65.4
BcaC04g19119 Brassica carinata HOM05D005483 ORTHO05D006924 0.0e+00 1401.3 1145 63.8
MBI11_g02503_MAGBIO Magnolia biondii HOM05D005483 ORTHO05D006924 0.0e+00 1383.6 1093 66.8
HPP92_020112 Vanilla planifolia HOM05D005483 ORTHO05D006924 0.0e+00 1375.1 1118 63.5
ATR0582G070 Amborella trichopoda HOM05D005483 ORTHO05D006924 0.0e+00 1346.6 1105 62.0
Medtr7g406760 Medicago truncatula HOM05D005483 ORTHO05D006924 0.0e+00 1315.4 894 73.0
SEGI_17725 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 0.0e+00 1314.3 1120 59.6
TAR374G0614 Trochodendron aralioides HOM05D005483 ORTHO05D006924 0.0e+00 1312.7 883 74.2
Atru.chr12.1443 Acer truncatum HOM05D005483 ORTHO05D006924 0.0e+00 1241.1 821 78.2
CDE05G0204 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 0.0e+00 1154.8 925 64.8
CSS0027672 Camellia sinensis var. sinensis HOM05D005483 ORTHO05D006924 0.0e+00 1147.1 783 75.4
Pp3c14_23090 Physcomitrium patens HOM05D005483 ORTHO05D006924 0.0e+00 1087.0 1072 52.1
Mapoly0029s0137 Marchantia polymorpha HOM05D005483 ORTHO05D006924 6.9e-311 1070.8 1088 49.5
DCAR_026441 Daucus carota HOM05D005483 ORTHO05D006924 3.0e-306 1055.4 670 79.4
Nitab4.5_0002569g0090 Nicotiana tabacum HOM05D005483 ORTHO05D006924 9.5e-305 1050.4 599 90.8
unitig_22.g6373 Utricularia gibba HOM05D005483 ORTHO05D006924 3.6e-304 1048.5 760 69.3
AagrBONN_evm.TU.Sc2ySwM_228.3500 Anthoceros agrestis HOM05D005483 ORTHO05D006924 4.6e-299 1031.6 1073 49.6
SMO116G0229 Selaginella moellendorffii HOM05D005483 ORTHO05D006924 9.0e-295 1017.3 1066 50.6
CDE05G1761 Ceratophyllum demersum HOM05D005483 ORTHO05D006924 1.3e-248 864.0 927 52.9
CBR_g38877 Chara braunii HOM05D005483 ORTHO05D006924 2.8e-219 766.5 1096 41.0
Zm00001eb113290 Zea mays HOM05D005483 ORTHO05D006924 7.5e-217 758.4 614 62.9
Hma1.2p1_1494F.1_g286880 Hydrangea macrophylla HOM05D005483 ORTHO05D006924 3.2e-167 593.6 421 74.3
RcHm_v2.0_Chr4g0402251 Rosa chinensis HOM05D005483 ORTHO05D006924 4.6e-158 563.1 366 74.6
DCAR_026440 Daucus carota HOM05D005483 ORTHO05D006924 1.1e-143 515.4 436 65.6
Os11g0528200 Oryza sativa ssp. japonica HOM05D005483 ORTHO05D006924 1.3e-123 448.7 355 63.1
unitig_22.g6372 Utricularia gibba HOM05D005483 ORTHO05D006924 3.3e-103 380.9 314 65.6
Cre01.g018050 Chlamydomonas reinhardtii HOM05D005483 ORTHO05D006924 4.7e-94 350.5 1186 27.2
Actinidia22109 Actinidia chinensis HOM05D005483 ORTHO05D006924 6.2e-94 350.1 314 60.8
Actinidia22108 Actinidia chinensis HOM05D005483 ORTHO05D006924 3.9e-88 330.9 335 60.0
MCO16G196 Micromonas commoda HOM05D005483 ORTHO05D006924 2.5e-87 328.2 1142 27.9
SEGI_02355 Sequoiadendron giganteum HOM05D005483 ORTHO05D006924 1.9e-82 312.0 365 47.7
Oeu011729.2 Olea europaea HOM05D005483 ORTHO05D000122 9.6e-71 273.1 333 48.6
SGA_v2.0_scaffold98G29280 Striga asiatica HOM05D005483 ORTHO05D007482 1.4e-66 259.2 322 51.2
Lj6C839G5 Lonicera japonica HOM05D005483 ORTHO05D006924 1.6e-38 166.0 149 65.8
RcHm_v2.0_Chr6g0278911 Rosa chinensis HOM05D005483 ORTHO05D006924 3.8e-35 154.8 100 80.0
Pp3c1_41760 Physcomitrium patens HOM05D005483 ORTHO05D006924 1.3e-32 146.4 644 22.4
DCAR_029048 Daucus carota HOM05D005483 ORTHO05D006924 2.4e-29 135.6 111 71.2
RcHm_v2.0_Chr2g0133761 Rosa chinensis HOM05D005483 ORTHO05D006924 4.5e-28 131.3 86 80.2
RcHm_v2.0_Chr2g0126951 Rosa chinensis HOM05D005483 ORTHO05D006924 5.0e-27 127.9 86 77.9
RcHm_v2.0_Chr5g0056851 Rosa chinensis HOM05D005483 ORTHO05D006924 5.1e-24 117.9 69 75.4
RcHm_v2.0_Chr7g0226991 Rosa chinensis HOM05D005483 ORTHO05D006924 1.5e-23 116.3 68 75.0
RcHm_v2.0_Chr0c29g0501111 Rosa chinensis HOM05D005483 ORTHO05D000581 4.4e-07 61.6 45 75.6


User provided reference genes

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