Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g030930.3 Solanum lycopersicum HOM05D003517 ORTHO05D009794 6.3e-45 183.7 92 100.0
Peaxi162Scf00456g00032 Petunia axillaris HOM05D003517 ORTHO05D009794 6.1e-32 140.6 132 60.6
Nitab4.5_0010559g0050 Nicotiana tabacum HOM05D003517 ORTHO05D009798 1.1e-25 119.8 181 43.6
DCAR_032460 Daucus carota HOM05D003517 ORTHO05D009794 4.4e-22 107.8 61 90.2
Peaxi162Scf00456g00029 Petunia axillaris HOM05D003517 ORTHO05D009794 4.4e-22 107.8 61 90.2
Solyc00g021630.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 4.4e-22 107.8 61 90.2
Nitab4.5_0000172g1090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 9.8e-22 106.7 191 39.3
RhsimMtG0007100 Rhododendron simsii HOM05D003517 ORTHO05D009794 1.3e-21 106.3 70 80.0
ATMG00270 Arabidopsis thaliana HOM05D003517 ORTHO05D009794 1.7e-21 105.9 61 88.5
BNapus_Darmor_BZH_scaffold_234p00290 Brassica napus HOM05D003517 ORTHO05D009794 1.7e-21 105.9 61 88.5
BolSC28t60338H Brassica oleracea HOM05D003517 ORTHO05D009794 1.7e-21 105.9 61 88.5
BolSC28t60397H Brassica oleracea HOM05D003517 ORTHO05D009794 1.7e-21 105.9 61 88.5
BraSC159t45725Z Brassica rapa HOM05D003517 ORTHO05D009794 1.7e-21 105.9 61 88.5
BraSC77t46643Z Brassica rapa HOM05D003517 ORTHO05D009794 1.7e-21 105.9 61 88.5
CSS0025973 Camellia sinensis var. sinensis HOM05D003517 ORTHO05D009794 1.7e-21 105.9 61 88.5
CARHR282730 Cardamine hirsuta HOM05D003517 ORTHO05D009794 1.7e-21 105.9 61 88.5
CsaV3_UNG208670 Cucumis sativus L. HOM05D003517 ORTHO05D009794 1.7e-21 105.9 61 88.5
HanXRQChr00c0234g0572741 Helianthus annuus HOM05D003517 ORTHO05D009794 1.7e-21 105.9 61 88.5
HanXRQChr01g0013411 Helianthus annuus HOM05D003517 ORTHO05D009794 1.7e-21 105.9 61 88.5
HanXRQChr02g0049481 Helianthus annuus HOM05D003517 ORTHO05D009794 1.7e-21 105.9 61 88.5
HanXRQChr09g0237761 Helianthus annuus HOM05D003517 ORTHO05D009794 1.7e-21 105.9 61 88.5
HanXRQMTg0579471 Helianthus annuus HOM05D003517 ORTHO05D009794 1.7e-21 105.9 61 88.5
Lj2P1233T102 Lonicera japonica HOM05D003517 ORTHO05D009794 1.7e-21 105.9 61 88.5
Lj2P1236T75 Lonicera japonica HOM05D003517 ORTHO05D009794 1.7e-21 105.9 61 88.5
Sed0011263 Sechium edule HOM05D003517 ORTHO05D009794 1.7e-21 105.9 61 88.5
Sed0015872 Sechium edule HOM05D003517 ORTHO05D009794 1.7e-21 105.9 61 88.5
CANSAT16G0040 Cannabis sativa HOM05D003517 ORTHO05D009794 2.8e-21 105.1 61 86.9
Sp3g25610 Schrenkiella parvula HOM05D003517 ORTHO05D009794 8.3e-21 103.6 61 86.9
Gohir.A03G108600 Gossypium hirsutum HOM05D003517 ORTHO05D009794 1.4e-20 102.8 61 86.9
Gorai.001G168000 Gossypium raimondii HOM05D003517 ORTHO05D009794 1.4e-20 102.8 61 86.9
HanXRQChr05g0138851 Helianthus annuus HOM05D003517 ORTHO05D009794 1.8e-20 102.4 61 85.2
RcHm_v2.0_MTg0498991 Rosa chinensis HOM05D003517 ORTHO05D009794 4.1e-20 101.3 61 85.2
Nitab4.5_0000172g0300 Nicotiana tabacum HOM05D003517 ORTHO05D009794 5.4e-20 100.9 61 82.0
arahy.Tifrunner.gnm1.ann1.8GMV2Y Arachis hypogaea HOM05D003517 ORTHO05D009794 7.0e-20 100.5 61 85.2
Glyma.08G301000 Glycine max HOM05D003517 ORTHO05D009794 7.0e-20 100.5 61 85.2
Lj5g0026865 Lotus japonicus HOM05D003517 ORTHO05D009794 7.0e-20 100.5 61 85.2
LjContig00439g0001390 Lotus japonicus HOM05D003517 ORTHO05D009794 7.0e-20 100.5 61 85.2
LjContig00446g0016600 Lotus japonicus HOM05D003517 ORTHO05D009794 7.0e-20 100.5 61 85.2
arahy.Tifrunner.gnm1.ann1.N584HR Arachis hypogaea HOM05D003517 ORTHO05D009794 9.1e-20 100.1 61 83.6
Nitab4.5_0003784g0040 Nicotiana tabacum HOM05D003517 ORTHO05D009798 9.1e-20 100.1 60 86.7
TPR.G40594 Trifolium pratense HOM05D003517 ORTHO05D009794 1.2e-19 99.8 61 83.6
Lalb_Chr00c21g0406031 Lupinus albus HOM05D003517 ORTHO05D009794 1.6e-19 99.4 61 83.6
Lalb_Chr00c39g0409031 Lupinus albus HOM05D003517 ORTHO05D009794 1.6e-19 99.4 61 83.6
Lalb_Chr00c39g0409211 Lupinus albus HOM05D003517 ORTHO05D009794 1.6e-19 99.4 61 83.6
Lalb_Chr00c51g0413121 Lupinus albus HOM05D003517 ORTHO05D009794 1.6e-19 99.4 61 83.6
Nitab4.5_0000172g0410 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.6e-19 99.4 61 83.6
Nn003s41395 Nelumbo nucifera HOM05D003517 ORTHO05D009794 2.7e-19 98.6 61 83.6
Nn1g09965 Nelumbo nucifera HOM05D003517 ORTHO05D009794 2.7e-19 98.6 61 83.6
Nn1g10124 Nelumbo nucifera HOM05D003517 ORTHO05D009794 2.7e-19 98.6 61 83.6
SHI35306 Sapria himalayana HOM05D003517 ORTHO05D009794 3.5e-19 98.2 61 83.6
SHI49089 Sapria himalayana HOM05D003517 ORTHO05D009794 3.5e-19 98.2 61 83.6
SHI53309 Sapria himalayana HOM05D003517 ORTHO05D009794 1.0e-18 96.7 61 82.0
MBI05_g05356_MAGBIO Magnolia biondii HOM05D003517 ORTHO05D009794 1.7e-18 95.9 61 83.6
Nitab4.5_0001152g0960 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.7e-18 95.9 70 74.3
Aqoxy38s018 Aquilegia oxysepala HOM05D003517 ORTHO05D009794 2.2e-18 95.5 61 82.0
CAN.G1.11 Capsicum annuum HOM05D003517 ORTHO05D009794 6.5e-18 94.0 60 83.3
SabraMtG0003300 Salix brachista HOM05D003517 ORTHO05D009794 2.5e-17 92.0 55 83.6
Gohir.A08G086024 Gossypium hirsutum HOM05D003517 ORTHO05D009794 1.2e-16 89.7 60 80.0
CDE02G3221 Ceratophyllum demersum HOM05D003517 ORTHO05D009794 3.6e-16 88.2 54 83.3
unitig_0.g2040 Utricularia gibba HOM05D003517 ORTHO05D009794 3.6e-16 88.2 51 86.3
SGA_v2.0_scaffold400G50848 Striga asiatica HOM05D003517 ORTHO05D009794 4.7e-16 87.8 67 70.1
Nitab4.5_0003945g0090 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.4e-15 86.3 52 86.5
Aa31csc798G10 Aethionema arabicum HOM05D003517 ORTHO05D009794 1.8e-15 85.9 52 88.5
Nitab4.5_0001152g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009794 6.8e-15 84.0 52 88.5
Actinidia34878 Actinidia chinensis HOM05D003517 ORTHO05D009794 8.8e-15 83.6 57 82.5
Pp3c12_12240 Physcomitrium patens HOM05D003517 ORTHO05D009794 2.0e-14 82.4 58 75.9
Ca_03783_v3 Cicer arietinum L. HOM05D009973 ORTHO05D009794 9.8e-14 80.1 51 84.3
VMungo0985G0003 Vigna mungo HOM05D003517 ORTHO05D009794 1.3e-13 79.7 50 86.0
LjContig00315g0004708 Lotus japonicus HOM05D003517 ORTHO05D009794 2.2e-13 79.0 61 72.1
SalBow1G3342 Salvia bowleyana HOM05D002965 ORTHO05D010536 1.4e-12 76.3 44 88.6
Nitab4.5_0001127g0280 Nicotiana tabacum HOM05D003517 ORTHO05D009794 3.1e-12 75.1 49 85.7
Sp5g20260 Schrenkiella parvula HOM05D003517 ORTHO05D009794 5.9e-11 70.9 38 86.8
Psat0s1454g0040 Pisum sativum HOM05D003517 ORTHO05D009794 7.8e-11 70.5 48 79.2
Solyc10g045730.1 Solanum lycopersicum HOM05D003517 ORTHO05D009794 1.0e-07 60.1 51 68.6
Nitab4.5_0001152g0550 Nicotiana tabacum HOM05D003517 ORTHO05D009794 1.8e-07 59.3 29 89.7
CAN.G110.13 Capsicum annuum HOM05D003517 ORTHO05D009798 2.3e-07 58.9 31 83.9
Solyc00g021640.2 Solanum lycopersicum HOM05D003517 ORTHO05D009798 2.3e-07 58.9 31 83.9
DCAR_032455 Daucus carota HOM05D003517 ORTHO05D009798 8.9e-07 57.0 31 80.6
Lj2P1236T76 Lonicera japonica HOM05D003517 ORTHO05D009798 8.9e-07 57.0 31 80.6
CsaV3_UNG208660 Cucumis sativus L. HOM05D003517 ORTHO05D009798 5.7e-06 54.3 31 77.4
Gorai.001G161800 Gossypium raimondii HOM05D003517 ORTHO05D009798 5.7e-06 54.3 31 77.4
GSVIVG01006669001 Vitis vinifera HOM05D003517 ORTHO05D009798 5.7e-06 54.3 31 77.4
Zm00001eb436030 Zea mays HOM05D003517 ORTHO05D009798 5.7e-06 54.3 31 77.4
Zm00001eb438110 Zea mays HOM05D003517 ORTHO05D009798 5.7e-06 54.3 31 77.4
Zm00001eb438970 Zea mays HOM05D003517 ORTHO05D009798 5.7e-06 54.3 31 77.4
Zm00001eb439050 Zea mays HOM05D003517 ORTHO05D009798 5.7e-06 54.3 31 77.4
Zm00001eb440630 Zea mays HOM05D003517 ORTHO05D009798 5.7e-06 54.3 31 77.4
Lj2P92T86 Lonicera japonica HOM05D003517 ORTHO05D009794 7.5e-06 53.9 30 83.3
Nitab4.5_0003945g0030 Nicotiana tabacum HOM05D003517 ORTHO05D009798 7.5e-06 53.9 29 82.8
SGA_v2.0_scaffold420G51390 Striga asiatica HOM05D003517 ORTHO05D009798 7.5e-06 53.9 31 77.4
unitig_87.g28026 Utricularia gibba HOM05D003517 ORTHO05D009798 9.8e-06 53.5 31 74.2


User provided reference genes

Program Settings