Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g030920.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.9e-77 292.4 142 100.0
Solyc00g142170.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.0e-29 132.9 72 86.1
Solyc00g500255.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.0e-29 132.9 72 86.1
PGSC0003DMG400001137 Solanum tuberosum HOM05D002660 ORTHO05D003902 2.0e-29 132.9 72 86.1
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 3.1e-27 125.6 67 86.6
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 2.7e-23 112.5 69 76.8
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 4.0e-22 108.6 67 76.1
CAN.G841.4 Capsicum annuum HOM05D002660 ORTHO05D003902 4.0e-22 108.6 66 75.8
Peaxi162Scf00625g00034 Petunia axillaris HOM05D002660 ORTHO05D003902 5.2e-22 108.2 71 70.4
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 6.8e-22 107.8 69 73.9
CAN.G140.15 Capsicum annuum HOM05D002660 ORTHO05D003902 8.8e-22 107.5 69 73.9
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 8.8e-22 107.5 97 58.8
CAN.G26.9 Capsicum annuum HOM05D002660 ORTHO05D003902 1.2e-21 107.1 71 67.6
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.2e-21 107.1 71 69.0
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.2e-21 107.1 71 69.0
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.2e-21 107.1 71 69.0
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.2e-21 107.1 71 69.0
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.2e-21 107.1 71 69.0
Solyc11g063540.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.2e-21 107.1 71 69.0
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 1.2e-21 107.1 71 69.0
Sopen05g012620 Solanum pennellii HOM05D002660 ORTHO05D003902 1.2e-21 107.1 71 69.0
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 1.2e-21 107.1 71 69.0
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 3.4e-21 105.5 138 45.7
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.7e-21 104.8 71 67.6
CAN.G993.8 Capsicum annuum HOM05D002660 ORTHO05D003902 1.3e-20 103.6 71 66.2
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 2.8e-20 102.4 97 54.6
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 1.4e-19 100.1 85 54.1
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 1.4e-19 100.1 85 54.1
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 4.1e-19 98.6 71 64.8
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 4.1e-19 98.6 71 64.8
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 4.1e-19 98.6 71 64.8
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 5.4e-19 98.2 71 63.4
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 5.4e-19 98.2 71 63.4
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 5.4e-19 98.2 71 63.4
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 5.4e-19 98.2 71 63.4
CAN.G1001.30 Capsicum annuum HOM05D002660 ORTHO05D003902 2.7e-18 95.9 69 65.2
Thhalv10003100m.g Eutrema salsugineum HOM05D002660 ORTHO05D003902 2.9e-17 92.4 63 66.7
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 3.3e-16 89.0 55 76.4
Solyc09g056290.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 4.0e-14 82.0 71 59.2
CAN.G72.10 Capsicum annuum HOM05D002660 ORTHO05D003902 6.8e-14 81.3 50 76.0
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 7.5e-13 77.8 69 53.6
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 8.3e-12 74.3 106 45.3
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 1.1e-11 73.9 71 52.1
Sed0016072 Sechium edule HOM05D002660 ORTHO05D003902 1.4e-11 73.6 101 43.6
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 1.8e-11 73.2 71 50.7
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 1.8e-11 73.2 69 50.7
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 2.4e-11 72.8 71 50.7
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 2.4e-11 72.8 71 50.7
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 2.4e-11 72.8 71 50.7
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 2.4e-11 72.8 71 50.7
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 3.1e-11 72.4 71 50.7
SGA_v2.0_scaffold400G50852 Striga asiatica HOM05D000388 ORTHO05D000473 4.1e-11 72.0 66 51.5
COL.COLO4_02507 Corchorus olitorius HOM05D002660 ORTHO05D003902 7.0e-11 71.2 67 52.2
Nitab4.5_0012260g0040 Nicotiana tabacum HOM05D002660 ORTHO05D003902 7.0e-11 71.2 69 47.8
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 1.2e-10 70.5 69 52.2
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 2.0e-10 69.7 66 53.0
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 3.5e-10 68.9 71 45.1
SHI41394 Sapria himalayana HOM05D002660 ORTHO05D003902 3.5e-10 68.9 67 47.8
Sed0024408 Sechium edule HOM05D002660 ORTHO05D003902 3.5e-10 68.9 69 49.3
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 4.5e-10 68.6 71 49.3
Nitab4.5_0003758g0080 Nicotiana tabacum HOM05D002660 ORTHO05D003902 7.8e-10 67.8 101 37.6
MBI05_g05346_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 1.0e-09 67.4 71 49.3
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 1.3e-09 67.0 55 50.9
Lsat_1_v5_gn_5_13340 Lactuca sativa HOM05D002660 ORTHO05D003902 1.3e-09 67.0 71 43.7
Lsat_1_v5_gn_5_172580 Lactuca sativa HOM05D002660 ORTHO05D003902 1.3e-09 67.0 71 43.7
Nitab4.5_0001607g0070 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.3e-09 67.0 68 47.1
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 1.7e-09 66.6 71 49.3
LjContig00315g0012920 Lotus japonicus HOM05D002660 ORTHO05D003902 1.7e-09 66.6 71 49.3
Dinv06680 Davidia involucrata HOM05D002660 ORTHO05D011644 2.9e-09 65.9 62 48.4
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 2.9e-09 65.9 66 47.0
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 5.0e-09 65.1 57 50.9
Cfa021334 Carpinus fangiana HOM05D002660 ORTHO05D003902 3.3e-08 62.4 76 44.7
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 4.3e-08 62.0 69 43.5
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 5.6e-08 61.6 53 54.7
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 5.6e-08 61.6 53 54.7
CsaV3_UNG207980 Cucumis sativus L. HOM05D002660 ORTHO05D003902 5.6e-08 61.6 75 46.7
Oeu022571.1 Olea europaea HOM05D001387 ORTHO05D001250 7.3e-08 61.2 81 37.0
BolC6t36210H Brassica oleracea HOM05D002660 ORTHO05D003902 9.5e-08 60.8 136 32.4
CAN.G1355.2 Capsicum annuum HOM05D002660 ORTHO05D003902 8.0e-07 57.8 70 41.4
Nitab4.5_0001023g0120 Nicotiana tabacum HOM05D002660 ORTHO05D003902 1.4e-06 57.0 107 33.6
Oeu021479.1 Olea europaea HOM05D002660 ORTHO05D011706 1.4e-06 57.0 59 42.4
Nn1g10106 Nelumbo nucifera HOM05D002660 ORTHO05D003902 2.3e-06 56.2 69 43.5
Nn1g10197 Nelumbo nucifera HOM05D002660 ORTHO05D003902 2.3e-06 56.2 69 43.5
Glyma.12G175100 Glycine max HOM05D002660 ORTHO05D003902 3.0e-06 55.8 69 43.5
Cpa.g.sc263.18 Carica papaya HOM05D002660 ORTHO05D003902 8.9e-06 54.3 47 51.1
Peaxi162Scf00611g00057 Petunia axillaris HOM05D002660 ORTHO05D003902 8.9e-06 54.3 40 62.5


User provided reference genes

Program Settings