Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Solyc11g030860.3 Solanum lycopersicum HOM05D002660 ORTHO05D003902 8.6e-90 333.6 162 100.0
Solyc00g500181.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.1e-41 173.7 101 85.1
Solyc00g500227.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.1e-41 173.7 101 85.1
Solyc00g500263.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.1e-41 173.7 101 85.1
Solyc00g500350.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.1e-41 173.7 101 85.1
Sopen00g006790 Solanum pennellii HOM05D002660 ORTHO05D003902 1.1e-41 173.7 101 85.1
PGSC0003DMG400033607 Solanum tuberosum HOM05D002660 ORTHO05D003902 1.1e-41 173.7 101 85.1
Solyc03g063470.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 8.2e-40 167.5 99 82.8
Solyc00g142170.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.4e-31 140.2 99 67.7
Solyc00g500255.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.4e-31 140.2 99 67.7
PGSC0003DMG400001137 Solanum tuberosum HOM05D002660 ORTHO05D003902 9.1e-31 137.5 99 66.7
CAN.G1167.16 Capsicum annuum HOM05D002660 ORTHO05D003902 2.9e-29 132.5 101 66.3
Sopen11g018230 Solanum pennellii HOM05D002660 ORTHO05D003902 3.8e-29 132.1 99 63.6
CAN.G1109.11 Capsicum annuum HOM05D002660 ORTHO05D003902 1.9e-28 129.8 101 65.3
CAN.G85.19 Capsicum annuum HOM05D002660 ORTHO05D003902 1.9e-28 129.8 101 65.3
CAN.G72.10 Capsicum annuum HOM05D002660 ORTHO05D003902 2.5e-28 129.4 99 64.6
CAN.G248.9 Capsicum annuum HOM05D002660 ORTHO05D003902 5.5e-28 128.3 100 63.0
Peaxi162Scf00625g00037 Petunia axillaris HOM05D002660 ORTHO05D003902 7.2e-28 127.9 103 65.0
CAN.G26.9 Capsicum annuum HOM05D002660 ORTHO05D003902 9.4e-28 127.5 100 65.0
CAN.G999.39 Capsicum annuum HOM05D002660 ORTHO05D003902 4.7e-27 125.2 101 63.4
arahy.Tifrunner.gnm1.ann1.2HU8EJ Arachis hypogaea HOM05D002660 ORTHO05D009622 6.7e-26 121.3 99 57.6
arahy.Tifrunner.gnm1.ann1.NU84BI Arachis hypogaea HOM05D000388 ORTHO05D000473 6.7e-26 121.3 99 57.6
CAN.G85.22 Capsicum annuum HOM05D002660 ORTHO05D003902 4.4e-25 118.6 99 58.6
CAN.G1.6 Capsicum annuum HOM05D002660 ORTHO05D003902 5.7e-25 118.2 101 60.4
Solyc10g047100.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 5.0e-21 105.1 68 77.9
SGA_v2.0_scaffold400G50852 Striga asiatica HOM05D000388 ORTHO05D000473 1.9e-20 103.2 118 45.8
CAN.G819.4 Capsicum annuum HOM05D002660 ORTHO05D003902 5.5e-20 101.7 69 69.6
BcaC05g26896 Brassica carinata HOM05D002660 ORTHO05D003902 3.6e-19 99.0 99 48.5
BcaC08g43707 Brassica carinata HOM05D002660 ORTHO05D003902 3.6e-19 99.0 99 48.5
CARHR283370 Cardamine hirsuta HOM05D002660 ORTHO05D003902 3.6e-19 99.0 99 48.5
AT2G07749 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 4.7e-19 98.6 99 48.5
ATMG01110 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 4.7e-19 98.6 99 48.5
BNapus_Darmor_BZH_scaffold_234p00270 Brassica napus HOM05D002660 ORTHO05D003902 4.7e-19 98.6 99 48.5
BolSC28t60340H Brassica oleracea HOM05D002660 ORTHO05D003902 4.7e-19 98.6 99 48.5
Solyc11g063530.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 1.5e-17 93.6 51 84.3
CAN.G505.14 Capsicum annuum HOM05D000743 ORTHO05D000580 7.5e-17 91.3 84 56.0
RcHm_v2.0_MTg0498601 Rosa chinensis HOM05D002660 ORTHO05D003902 1.1e-15 87.4 99 49.5
ATMG01410 Arabidopsis thaliana HOM05D002660 ORTHO05D003902 2.4e-15 86.3 102 46.1
arahy.Tifrunner.gnm1.ann1.ET7F5Q Arachis hypogaea HOM05D002660 ORTHO05D003902 3.1e-15 85.9 120 45.0
Sed0026029 Sechium edule HOM05D003467 ORTHO05D004220 3.1e-15 85.9 111 47.7
arahy.Tifrunner.gnm1.ann1.BS65NI Arachis hypogaea HOM05D002660 ORTHO05D003902 4.1e-15 85.5 99 48.5
arahy.Tifrunner.gnm1.ann1.P7KX5B Arachis hypogaea HOM05D002660 ORTHO05D003902 4.1e-15 85.5 99 48.5
arahy.Tifrunner.gnm1.ann1.QMNG84 Arachis hypogaea HOM05D002660 ORTHO05D003902 4.1e-15 85.5 99 48.5
arahy.Tifrunner.gnm1.ann1.8U7R2G Arachis hypogaea HOM05D002660 ORTHO05D003902 7.0e-15 84.7 99 48.5
Sed0020463 Sechium edule HOM05D002660 ORTHO05D003902 9.1e-15 84.3 102 47.1
MBI14_g38700_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 1.2e-14 84.0 83 53.0
CAN.G505.3 Capsicum annuum HOM05D002660 ORTHO05D003902 2.0e-14 83.2 80 51.2
Solyc00g500104.1 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.0e-14 83.2 49 85.7
GSVIVG01029663001 Vitis vinifera HOM05D002660 ORTHO05D003902 1.0e-13 80.9 104 45.2
CAN.G841.4 Capsicum annuum HOM05D002660 ORTHO05D003902 1.3e-13 80.5 55 72.7
Aa31csc1168G10 Aethionema arabicum HOM05D002660 ORTHO05D003902 2.9e-13 79.3 143 34.3
CsaV3_UNG207980 Cucumis sativus L. HOM05D002660 ORTHO05D003902 5.0e-13 78.6 72 52.8
SGA_v2.0_scaffold420G51340 Striga asiatica HOM05D002660 ORTHO05D003902 8.5e-13 77.8 99 42.4
MBI14_g38260_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D002552 1.1e-12 77.4 83 47.0
arahy.Tifrunner.gnm1.ann1.DD5JWP Arachis hypogaea HOM05D002660 ORTHO05D003902 1.5e-12 77.0 106 43.4
Peaxi162Scf00625g00036 Petunia axillaris HOM05D002660 ORTHO05D003902 1.9e-12 76.6 115 43.5
Sed0012925 Sechium edule HOM05D002660 ORTHO05D003902 1.9e-12 76.6 84 46.4
CAN.G950.7 Capsicum annuum HOM05D002660 ORTHO05D003902 2.5e-12 76.3 119 42.0
Glyma.08G300900 Glycine max HOM05D002660 ORTHO05D003902 7.2e-12 74.7 96 43.8
arahy.Tifrunner.gnm1.ann1.HMG3T6 Arachis hypogaea HOM05D002660 ORTHO05D003902 6.1e-11 71.6 99 42.4
MBI14_g38258_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 6.1e-11 71.6 99 43.4
MBI14_g44092_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 6.1e-11 71.6 99 42.4
Peaxi162Scf00456g00034 Petunia axillaris HOM05D004909 ORTHO05D009316 6.1e-11 71.6 63 61.9
COL.COLO4_04088 Corchorus olitorius HOM05D002660 ORTHO05D003902 8.0e-11 71.2 102 44.1
CAN.G1.4 Capsicum annuum HOM05D002660 ORTHO05D003902 4.0e-10 68.9 56 60.7
Lj5g0008059 Lotus japonicus HOM05D002660 ORTHO05D003902 4.0e-10 68.9 96 41.7
Thhalv10003100m.g Eutrema salsugineum HOM05D002660 ORTHO05D003902 5.2e-10 68.6 73 45.2
BraSC177t45771Z Brassica rapa HOM05D002660 ORTHO05D003902 8.8e-10 67.8 63 49.2
BraSC48t46265Z Brassica rapa HOM05D002660 ORTHO05D003902 8.8e-10 67.8 63 49.2
BolC6t36210H Brassica oleracea HOM05D002660 ORTHO05D003902 1.2e-09 67.4 63 49.2
Gohir.A06G098104 Gossypium hirsutum HOM05D002660 ORTHO05D003902 1.7e-08 63.5 105 40.0
MBI14_g38259_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D010725 1.1e-07 60.8 97 38.1
SGA_v2.0_scaffold479G52276 Striga asiatica HOM05D002660 ORTHO05D003902 1.8e-07 60.1 99 36.4
Lsat_1_v5_gn_5_13340 Lactuca sativa HOM05D002660 ORTHO05D003902 3.1e-07 59.3 98 35.7
Lsat_1_v5_gn_5_172580 Lactuca sativa HOM05D002660 ORTHO05D003902 3.1e-07 59.3 98 35.7
MBI05_g05343_MAGBIO Magnolia biondii HOM05D000445 ORTHO05D000314 3.1e-07 59.3 102 41.2
MBI05_g05346_MAGBIO Magnolia biondii HOM05D002660 ORTHO05D003902 7.0e-07 58.2 88 43.2
Nn1g10106 Nelumbo nucifera HOM05D002660 ORTHO05D003902 1.2e-06 57.4 125 38.4
Nn1g10197 Nelumbo nucifera HOM05D002660 ORTHO05D003902 1.2e-06 57.4 125 38.4
Nitab4.5_0013560g0040 Nicotiana tabacum HOM05D011968 ORTHO05D014241 1.2e-06 57.4 101 42.6
Lalb_Chr00c24g0406851 Lupinus albus HOM05D002660 ORTHO05D003902 1.6e-06 57.0 99 38.4
Glyma.12G175100 Glycine max HOM05D002660 ORTHO05D003902 2.0e-06 56.6 99 37.4
Solyc11g063540.2 Solanum lycopersicum HOM05D002660 ORTHO05D003902 2.0e-06 56.6 30 86.7
Sopen05g012620 Solanum pennellii HOM05D002660 ORTHO05D003902 2.0e-06 56.6 30 86.7
BcaC05g27131 Brassica carinata HOM05D002660 ORTHO05D003902 2.7e-06 56.2 93 37.6
Sed0024408 Sechium edule HOM05D002660 ORTHO05D003902 4.5e-06 55.5 63 41.3
Nitab4.5_0010333g0110 Nicotiana tabacum HOM05D011968 ORTHO05D014241 5.9e-06 55.1 101 40.6
CAN.G140.15 Capsicum annuum HOM05D002660 ORTHO05D003902 7.7e-06 54.7 35 65.7


User provided reference genes

Program Settings